Lag0038223 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA MFVQILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCGCADGQAVLLAHDRGMAMVSKCFGNGGSLLPFAFDF Homology
BLAST of Lag0038223 vs. NCBI nr
Match: XP_038903290.1 (E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida]) HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12 Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Lag0038223 vs. NCBI nr
Match: KAG7028156.1 (E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Lag0038223 vs. NCBI nr
Match: KAG8371113.1 (hypothetical protein BUALT_Bualt13G0053000 [Buddleja alternifolia]) HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Lag0038223 vs. NCBI nr
Match: XP_023005635.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita maxima]) HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Lag0038223 vs. NCBI nr
Match: XP_022952378.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita moschata]) HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match: Q9SVC6 (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06 Identity = 27/80 (33.75%), Postives = 48/80 (60.00%), Query Frame = 0
BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match: Q84TG3 (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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