Lag0038199 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038199
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCoat protein
Locationchr2: 13639193 .. 13639726 (-)
RNA-Seq ExpressionLag0038199
SyntenyLag0038199
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTTGATCTGGCAGGATACTCGTCGTTTGTTCCGATTTTGAAGGATTATTTGGGCATACCCTGCAAATCGATCGACACTGGAGTGAAGAGTGGATCCGCATGGTGGACGTTGAGGCCCAGAGTTGTGAATGGCACTGTTGATTTACAACGTATTCTACCGCGTTCACATTATTCTGACTTTGGCGCTGTTCTTCGCACAATGTTTGTGAATCCAAATGAAGAAGGGGATGTTGATGGGATCGTTGCACCACGCGACACCGACGTTGGTTTTGGATATACTGTCAGAGAAGCAGCGTTAAACATTGGCGTTCAGGACGTTTCTCGCACTTTGTCACGGACCAAAGGAAGAGTGGAGCCACGGAGCAATATAGATATAGCCTTGCACTCAACTTGTTTTAATTTCATTAAGCTTGAAGGTGTTTCTTTTATCTTATTGATTTTTGTTTTGTTGGATCATACGTTGGACATTCAAACCACAGATCTGTTAGTCGTTAGCTCGTGGACTCTTTTAACTTATTTTAGTTTCTAG

mRNA sequence

ATGCAGTTTGATCTGGCAGGATACTCGTCGTTTGTTCCGATTTTGAAGGATTATTTGGGCATACCCTGCAAATCGATCGACACTGGAGTGAAGAGTGGATCCGCATGGTGGACGTTGAGGCCCAGAGTTGTGAATGGCACTGTTGATTTACAACGTATTCTACCGCGTTCACATTATTCTGACTTTGGCGCTGTTCTTCGCACAATGTTTGTGAATCCAAATGAAGAAGGGGATGTTGATGGGATCGTTGCACCACGCGACACCGACGTTGGTTTTGGATATACTGTCAGAGAAGCAGCGTTAAACATTGGCGTTCAGGACGTTTCTCGCACTTTGTCACGGACCAAAGGAAGAGTGGAGCCACGGAGCAATATAGATATAGCCTTGCACTCAACTTGTTTTAATTTCATTAAGCTTGAAGGTGTTTCTTTTATCTTATTGATTTTTGTTTTGTTGGATCATACGTTGGACATTCAAACCACAGATCTGTTAGTCGTTAGCTCGTGGACTCTTTTAACTTATTTTAGTTTCTAG

Coding sequence (CDS)

ATGCAGTTTGATCTGGCAGGATACTCGTCGTTTGTTCCGATTTTGAAGGATTATTTGGGCATACCCTGCAAATCGATCGACACTGGAGTGAAGAGTGGATCCGCATGGTGGACGTTGAGGCCCAGAGTTGTGAATGGCACTGTTGATTTACAACGTATTCTACCGCGTTCACATTATTCTGACTTTGGCGCTGTTCTTCGCACAATGTTTGTGAATCCAAATGAAGAAGGGGATGTTGATGGGATCGTTGCACCACGCGACACCGACGTTGGTTTTGGATATACTGTCAGAGAAGCAGCGTTAAACATTGGCGTTCAGGACGTTTCTCGCACTTTGTCACGGACCAAAGGAAGAGTGGAGCCACGGAGCAATATAGATATAGCCTTGCACTCAACTTGTTTTAATTTCATTAAGCTTGAAGGTGTTTCTTTTATCTTATTGATTTTTGTTTTGTTGGATCATACGTTGGACATTCAAACCACAGATCTGTTAGTCGTTAGCTCGTGGACTCTTTTAACTTATTTTAGTTTCTAG

Protein sequence

MQFDLAGYSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDFGAVLRTMFVNPNEEGDVDGIVAPRDTDVGFGYTVREAALNIGVQDVSRTLSRTKGRVEPRSNIDIALHSTCFNFIKLEGVSFILLIFVLLDHTLDIQTTDLLVVSSWTLLTYFSF
Homology
BLAST of Lag0038199 vs. NCBI nr
Match: QPL17799.1 (coat protein [Pistacia cryptic virus])

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-14
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 8   YSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDFGAVLR 67
           Y +++P+LK  LGIP KS+DT +KSGSAWWT RP++V+G  D + I P S+YS+  AVL 
Sbjct: 228 YEAYIPVLKS-LGIPVKSVDTRIKSGSAWWTYRPQLVDGHYDFRCIFPPSNYSEHSAVLA 287

Query: 68  TMFVNPNEEGDVDGIVAPRDTDVGFGYTVRE 99
           ++F+  N++ +   ++A +  DV +   +RE
Sbjct: 288 SIFLVINDDDEPIPLIAYQADDVNYPVRLRE 317

BLAST of Lag0038199 vs. NCBI nr
Match: YP_001686788.1 (putative coat protein [Rose cryptic virus 1] >ABV89763.1 unknown [Rosa multiflora cryptic virus] >ABZ10947.1 putative coat protein [Rose cryptic virus 1] >AIY31433.1 hypothetical protein [Rose cryptic virus 1] >QCQ67919.1 hypothetical protein [Rose cryptic virus 1])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-13
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 0

Query: 3   FDLAGYSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDF 62
           F++  Y +++P  KD LGIPCKS+D  +KSGSAWWT +    +GT DL   +P ++YSD 
Sbjct: 225 FNITDYQTYIPTFKD-LGIPCKSVDPHIKSGSAWWTYKLNNAHGTTDLVCTIPPTNYSDL 284

Query: 63  GAVLRTMFVNPNEEGD-VDGIVAPRDTDVGFGYTVREAALNIGVQDVSRTLSRTKGRVEP 122
           G  LR++F+    + D    I+A  +    FG  +RE   N    ++   L+   G +E 
Sbjct: 285 GVALRSLFLATAADSDECSEIIAWPEGTADFGTNLRENPPN---SNIRAFLALCHGPLEE 343

Query: 123 RSN 125
            SN
Sbjct: 345 WSN 343

BLAST of Lag0038199 vs. NCBI nr
Match: QED42870.1 (ORF1 [Camellia cryptic virus 1])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 8   YSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDFGAVLR 67
           Y + +PIL++  GIP K++DT VKSGSAWWT R + VN T D + ILP  HYS+  A+L 
Sbjct: 227 YEACMPILREN-GIPIKNVDTRVKSGSAWWTYRLKSVNDTYDFECILPFLHYSEHSALLS 286

Query: 68  TMFVNPNEEGDVDGIVAPRDTDVGFGYTVRE 99
           +MF++  + G++  I+  +  DV +G  +RE
Sbjct: 287 SMFLHV-QSGEIRPIIELKGDDVAYGVRLRE 315

BLAST of Lag0038199 vs. NCBI nr
Match: QPL17793.1 (coat protein [Pistacia cryptic virus])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 8   YSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDFGAVLR 67
           Y +++P+LK  LGIP KS+DT +KSGSAWWT RP++V+G  D + I P S+YS+   VL 
Sbjct: 228 YEAYIPVLKS-LGIPVKSVDTRIKSGSAWWTYRPQLVDGHYDFRCIFPPSNYSEHSVVLA 287

Query: 68  TMFVNPNEEGDVDGIVAPRDTDVGFGYTVRE 99
           ++F+  ++  +   ++A +  D  +   +RE
Sbjct: 288 SIFLVIDDNDEPISLIAHQADDANYPVRLRE 317

BLAST of Lag0038199 vs. NCBI nr
Match: KAG2390763.1 (uncharacterized protein HKW66_Vig0252990 [Vigna angularis])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 3   FDLAGYSSFVPILKDYLGIPCKSIDTGVKSGSAWWTLRPRVVNGTVDLQRILPRSHYSDF 62
           +  A Y ++VP L   LGIP KS+D GVK+GSAWWT +  V+ G+ DL   LPRSHYSD 
Sbjct: 447 YPFAEYLTYVPTLA-RLGIPLKSVDAGVKTGSAWWTFKLEVIFGSADLICTLPRSHYSDM 506

Query: 63  GAVLRTMFVNPNEEGDVDGIVAPRDTDVGFG 94
            A LR +F+  +E    + IV+   T   FG
Sbjct: 507 SAQLRMLFIAGDETHPPEDIVSLPATYNNFG 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QPL17799.15.9e-1443.96coat protein [Pistacia cryptic virus][more]
YP_001686788.12.3e-1337.40putative coat protein [Rose cryptic virus 1] >ABV89763.1 unknown [Rosa multiflor... [more]
QED42870.11.1e-1245.05ORF1 [Camellia cryptic virus 1][more]
QPL17793.11.5e-1240.66coat protein [Pistacia cryptic virus][more]
KAG2390763.11.5e-1247.25uncharacterized protein HKW66_Vig0252990 [Vigna angularis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038199.1Lag0038199.1mRNA