Lag0037986 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037986
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ethylene-responsive transcription factor ERF098-like
Location	chr2: 11316607 .. 11317119 (+)
RNA-Seq Expression	Lag0037986
Synteny	Lag0037986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCCCGACCCGATTCAAGGTTGACCCGACCTAGGTCGGATCAGGGTTTTTTTTTTTTTTTTTTTTTCATGTGCAACTAATTAGAATCGAAAAAGGAAAAATGGAAGGAAAGAGATCGACGAACGAAGCTCGTTACCGAGGGATACGACAGCAGCCATGGGGAAATTCGCGGTGGAGATTCGAGATTCATCGAGGAACGGCGCTCGGCTATGGCTAGGGATGTTCGACACGGTGGAGGAAGCAGCGAGGGCGTACGATCAAGCGGCATATGCGTTCAGAGGCATTTGGCAATTTTGAATTTTTCGAATGAGTACCGAAGTGAAAACCCTAATTTCGCGACGGCGTTTGGTTCTTCAACGGCGGCACCTTCTTCCTCGGCCACGACGATCTCTTTCGCCAGAAATTACTCCGACAACAATGCGAGTCGTCGATCGGGCGAAGTGATAGAGTTTGAGTATTTGGACAATGAGCTTTTGATTGAAAAGGAGGAAGGAGGAGAACACGATTGA

mRNA sequence

ATGTTGGCCCGACCCGATTCAAGAGATCGACGAACGAAGCTCGTTACCGAGGGATACGACAGCAGCCATGGGGAAATTCGCGGTGGAGATTCGAGATTCATCGAGGAACGGCGCTCGGCTATGGCTAGGGATGTTCGACACGGTGGAGGAAGCAGCGAGGGCGTACGATCAAGCGGCATATGCGTTCAGAGGCATTTGGCAATTTTGAATTTTTCGAATGAGTACCGAAGTGAAAACCCTAATTTCGCGACGGCGTTTGGTTCTTCAACGGCGGCACCTTCTTCCTCGGCCACGACGATCTCTTTCGCCAGAAATTACTCCGACAACAATGCGAGTCGTCGATCGGGCGAAGTGATAGAGTTTGAGTATTTGGACAATGAGCTTTTGATTGAAAAGGAGGAAGGAGGAGAACACGATTGA

Coding sequence (CDS)

ATGTTGGCCCGACCCGATTCAAGAGATCGACGAACGAAGCTCGTTACCGAGGGATACGACAGCAGCCATGGGGAAATTCGCGGTGGAGATTCGAGATTCATCGAGGAACGGCGCTCGGCTATGGCTAGGGATGTTCGACACGGTGGAGGAAGCAGCGAGGGCGTACGATCAAGCGGCATATGCGTTCAGAGGCATTTGGCAATTTTGAATTTTTCGAATGAGTACCGAAGTGAAAACCCTAATTTCGCGACGGCGTTTGGTTCTTCAACGGCGGCACCTTCTTCCTCGGCCACGACGATCTCTTTCGCCAGAAATTACTCCGACAACAATGCGAGTCGTCGATCGGGCGAAGTGATAGAGTTTGAGTATTTGGACAATGAGCTTTTGATTGAAAAGGAGGAAGGAGGAGAACACGATTGA

Protein sequence

MLARPDSRDRRTKLVTEGYDSSHGEIRGGDSRFIEERRSAMARDVRHGGGSSEGVRSSGICVQRHLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYLDNELLIEKEEGGEHD

Homology

[Close]

BLAST of Lag0037986 vs. NCBI nr
Match: XP_038900166.1 (ethylene-responsive transcription factor ERF098-like [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 56/67 (83.58%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 65  HLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYL 124
           HLAILNF NEY+S NPNFA  FGSS AA SSSATTISFA NYS NNASRRS EVIEFEYL
Sbjct: 69  HLAILNFPNEYQSGNPNFAGGFGSSMAAGSSSATTISFAGNYSGNNASRRSREVIEFEYL 128

Query: 125 DNELLIE 132
           DNELL E
Sbjct: 129 DNELLEE 135

[Close]

BLAST of Lag0037986 vs. NCBI nr
Match: XP_011659259.1 (ethylene-responsive transcription factor ERF098 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-16
Identity = 51/67 (76.12%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 65  HLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYL 124
           HLAILNF NEY+S NPNF   +GSS A+ SSS TTISF  NYS NNASR SGEVIEFEYL
Sbjct: 69  HLAILNFPNEYQSGNPNFGAGYGSSAASGSSSTTTISFGGNYSGNNASRGSGEVIEFEYL 128

Query: 125 DNELLIE 132
           DNELL E
Sbjct: 129 DNELLEE 135

[Close]

BLAST of Lag0037986 vs. NCBI nr
Match: KAA0059645.1 (ethylene-responsive transcription factor ERF098-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 50/67 (74.63%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 65  HLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYL 124
           HLAILNF NEY+S NPNF   +GSS A  SSS TTISF  NYS NNA R SGEVIEFEYL
Sbjct: 73  HLAILNFPNEYQSGNPNFGAGYGSSAAPGSSSTTTISFGGNYSGNNARRGSGEVIEFEYL 132

Query: 125 DNELLIE 132
           DNELL E
Sbjct: 133 DNELLEE 139

[Close]

BLAST of Lag0037986 vs. NCBI nr
Match: XP_008451255.1 (PREDICTED: ethylene-responsive transcription factor ERF098-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 50/67 (74.63%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 65  HLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYL 124
           HLAILNF NEY+S NPNF   +GSS A  SSS TTISF  NYS NNA R SGEVIEFEYL
Sbjct: 133 HLAILNFPNEYQSGNPNFGAGYGSSAAPGSSSTTTISFGGNYSGNNARRGSGEVIEFEYL 192

Query: 125 DNELLIE 132
           DNELL E
Sbjct: 193 DNELLEE 199

[Close]

BLAST of Lag0037986 vs. NCBI nr
Match: TYK08177.1 (ethylene-responsive transcription factor ERF098-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 50/67 (74.63%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 65  HLAILNFSNEYRSENPNFATAFGSSTAAPSSSATTISFARNYSDNNASRRSGEVIEFEYL 124
           HLAILNF NEY+S NPNF   +GSS A  SSS TTISF  NYS NNA R SGEVIEFEYL
Sbjct: 66  HLAILNFPNEYQSGNPNFGAGYGSSAAPGSSSTTTISFGGNYSGNNARRGSGEVIEFEYL 125

Query: 125 DNELLIE 132
           DNELL E
Sbjct: 126 DNELLEE 132

The following BLAST results are available for this feature:

BLAST of Lag0037986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900166.1	1.2e-17	83.58	ethylene-responsive transcription factor ERF098-like [Benincasa hispida]	[more]
XP_011659259.1	5.0e-16	76.12	ethylene-responsive transcription factor ERF098 [Cucumis sativus]	[more]
KAA0059645.1	3.2e-15	74.63	ethylene-responsive transcription factor ERF098-like protein [Cucumis melo var. ...	[more]
XP_008451255.1	3.2e-15	74.63	PREDICTED: ethylene-responsive transcription factor ERF098-like [Cucumis melo]	[more]
TYK08177.1	3.2e-15	74.63	ethylene-responsive transcription factor ERF098-like protein [Cucumis melo var. ...	[more]

BLAST of Lag0037986 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037986.1	Lag0037986.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity