Lag0037792 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037792
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr2: 9217994 .. 9218992 (+)
RNA-Seq ExpressionLag0037792
SyntenyLag0037792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCACCTTCGAAGTTTCTGGACGCTACTGAATCCCAGGTAAACCCGCTCATTACTGTATGGAAAAAGTATAATCGAACACTCACGAGTTGGATCTATTCATCATTGAATGAAGATAAATAAGGAGAAATTATTGGCTGCACAACTGCTTATGAAATTTGGGAACACCTTCGGGTAGTATATGAGTCTTCTTTTATAGCTCGTATCATGGGTCTTTGCTCTCAGCTTCAAAAGATCCGCAAAGACAACCTCTCTCTCTGTGTCTCAATACCTTGCTCAGATCAAAGATATTGCGGACAAGTTTTCGGCCATAGGCGAACCTCTCTCGTATGGTGATCACCTTGGTTATATTCTTGAAGGCCTCGATTCTGAATATAACCCATTCAACACCTCCATTCAAAATCGCAACGATCGTCCTTCTCTAGTAGATATTCGTAGCCTCCTTCTTGCCTATGAGGCACAACTTGAGAAACAATCCACGGTTGATTAGTTGAATATGGTTCTATCCAATCTAGCCAACTAGCCCTCTCCCTCTAGCCAACATCATTCCCAAAAGTAGCCTTCAAATTCCAAACCAAATCCCTTACCTAAAGCCTCTTTTCCCCCTTCAAATTCCACACCAAATCCCTTACCTAAAGCCTCTTTTCCCCCTTCATTTCCCAACCCTTTTCCATCACCTTCTCCTAGTCCTGGTGTCTTAGGTCACCCTAGTCTTTCGCTCGTCCTCAACGAGGGTCTTCTTCCAATAATTCCAATTGACCACAATGCCAGATATGTGGCAAACTTGGCCAAACTGCCTTGGTTTGCTACAATTGTCTAAATCCGCTATATCAGGCCCCTAACTCCTCCCCATCTCCTCAAGCCTTTTTCAACCAGTTTCAGCAACCCCCTTCCTCTGTTTCCCATTCCCCTGTTTCATCCGAGTCCATCGTACCCAACATCCCTCACCCAGATGAAGCTTGGTTCATGGATTCCGGAGCTACTCCCACCACATGA

mRNA sequence

ATGCCTGCACCTTCGAAGTTTCTGGACGCTACTGAATCCCAGCTCGTATCATGGGTCTTTGCTCTCAGCTTCAAAAGATCCGCAAAGACAACCTCTCTCTCTGTGTCTCAATACCTTGCTCAGATCAAAGATATTGCGGACAAGTTTTCGGCCATAGGCGAACCTCTCTCGTATGGTGATCACCTTGGTTATATTCTTGAAGGCCTCGATTCTGAATATAACCCATTCAACACCTCCATTCAAAATCGCAACGATCGTCCTTCTCTAGTAGATATTCGTAGCCTCCTTCTTGCCTATGAGGCACAACTTGAGAAACAATCCACGGCCCCTAACTCCTCCCCATCTCCTCAAGCCTTTTTCAACCAGTTTCAGCAACCCCCTTCCTCTGTTTCCCATTCCCCTGTTTCATCCGAGTCCATCGTACCCAACATCCCTCACCCAGATGAAGCTTGGTTCATGGATTCCGGAGCTACTCCCACCACATGA

Coding sequence (CDS)

ATGCCTGCACCTTCGAAGTTTCTGGACGCTACTGAATCCCAGCTCGTATCATGGGTCTTTGCTCTCAGCTTCAAAAGATCCGCAAAGACAACCTCTCTCTCTGTGTCTCAATACCTTGCTCAGATCAAAGATATTGCGGACAAGTTTTCGGCCATAGGCGAACCTCTCTCGTATGGTGATCACCTTGGTTATATTCTTGAAGGCCTCGATTCTGAATATAACCCATTCAACACCTCCATTCAAAATCGCAACGATCGTCCTTCTCTAGTAGATATTCGTAGCCTCCTTCTTGCCTATGAGGCACAACTTGAGAAACAATCCACGGCCCCTAACTCCTCCCCATCTCCTCAAGCCTTTTTCAACCAGTTTCAGCAACCCCCTTCCTCTGTTTCCCATTCCCCTGTTTCATCCGAGTCCATCGTACCCAACATCCCTCACCCAGATGAAGCTTGGTTCATGGATTCCGGAGCTACTCCCACCACATGA

Protein sequence

MPAPSKFLDATESQLVSWVFALSFKRSAKTTSLSVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNTSIQNRNDRPSLVDIRSLLLAYEAQLEKQSTAPNSSPSPQAFFNQFQQPPSSVSHSPVSSESIVPNIPHPDEAWFMDSGATPTT
Homology
BLAST of Lag0037792 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-21
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 34  SVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNTSIQNRNDRPSLVDIR 93
           SVSQYLA+IK+IADKF+A+GEPLSY DHL ++L+GL SEYN F TSI NR D PSL D+R
Sbjct: 148 SVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVR 207

Query: 94  SLLLAYEAQLEKQST 109
           SLLLAYEA+L+KQ+T
Sbjct: 208 SLLLAYEARLDKQNT 222

BLAST of Lag0037792 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 6.0e-21
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 0

Query: 29  KTTSLSVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNTSIQNRNDRPS 88
           K   L+VSQYLAQIKD+ D F+AIGEPLSY DHL YILEGL SEYNPF +SI NR +RPS
Sbjct: 40  KKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTNRPS 99

Query: 89  LVDIRSLLLAYEAQLEKQSTAPNSSPSPQAFFNQFQQPPSSVSHSPVSSESIVP 143
           + D+R+LL+ Y+++LEKQ+             +  Q   ++V+H  ++S++  P
Sbjct: 100 IADVRNLLITYDSRLEKQTAT-----------DHLQLIQANVAHLSINSQNRHP 142

BLAST of Lag0037792 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-18
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 32  SLSVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNTSIQNRNDRPSLVD 91
           +LS+SQYL+QIKD+ADKFS +GE +SY DHL +IL+GL SEYN F TSIQN  D  S+ D
Sbjct: 14  NLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSIQNHVDNLSVED 73

Query: 92  IRSLLLAYEAQLEKQS 108
           + SLLL+YEAQLEKQ+
Sbjct: 74  VWSLLLSYEAQLEKQN 89

BLAST of Lag0037792 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 26  RSAKTTSLSVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNTSIQNRND 85
           +  K   LSVSQYLA+IK+I  K S+IGEP+S  DH+ YI+EGL  EYN F TSIQNR+D
Sbjct: 9   QQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRSD 68

Query: 86  RPSLVDIRSLLLAYEAQLEKQST 109
             +L D+R+LLLAY+ +LEKQ++
Sbjct: 69  MXTLEDVRTLLLAYDYRLEKQNS 91

BLAST of Lag0037792 vs. NCBI nr
Match: TXG68750.1 (hypothetical protein EZV62_003685 [Acer yangbiense])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-17
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 19  VFALSFKRSAKTTSLSVSQYLAQIKDIADKFSAIGEPLSYGDHLGYILEGLDSEYNPFNT 78
           + A S   + K    +++QYL Q K+I DKF+AIGEPLSY DHLGY+LEGL  EY+ F T
Sbjct: 74  LLARSQLTNLKKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVT 133

Query: 79  SIQNRNDRPSLVDIRSLLLAYEAQLEKQS 108
           SI+NR D+PS+ D+ SLLL++E +L K++
Sbjct: 134 SIENRVDKPSIEDVESLLLSHERRLSKET 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.6e-2173.33uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_038887133.16.0e-2150.88uncharacterized protein LOC120077323 [Benincasa hispida][more]
XP_038891713.12.8e-1867.11uncharacterized protein LOC120081111 [Benincasa hispida][more]
XP_022148871.11.8e-1759.04uncharacterized protein LOC111017438 [Momordica charantia][more]
TXG68750.14.0e-1753.93hypothetical protein EZV62_003685 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 32..104
e-value: 1.8E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..140
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 26..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037792.1Lag0037792.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding