Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGGTGCGCAATGGTAAATCCATTCTCTTTTGGCATGATAACTGGTCTGTTCTTGGTCCTTTGAAATATGTTAATGATCGCCTCTATCAGTTATCTTCAAACAAAAGTCTCACAGTTGAGGAAGCTTGGTCGAATTTGGATAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG
mRNA sequence
ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG
Coding sequence (CDS)
ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG
Protein sequence
MIWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERVEFSSSSASFDREIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNRIFQDKVRSGIQLWEDVVSLAALWTKKSKAFSDYSASIIALNWESFL
Homology
BLAST of Lag0037785 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 164.1 bits (414), Expect = 1.9e-36
Identity = 105/346 (30.35%), Postives = 162/346 (46.82%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
+W+F TE LW++ I +KY SFPS +FSS+ SPW A+++ F+ N W
Sbjct: 801 LWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVN 860
Query: 62 --ERVEF---------------------------------SSSSASF---------DREI 121
E + F + SS + D E
Sbjct: 861 DGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEE 920
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
W+ + + LP P RG W + + F T + + + AP P + + + L
Sbjct: 921 NLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP-ANFHPNLYKTL 980
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
WK + PKK K F H +NT DRLQK +P+ C +C S + I+HLFIHC
Sbjct: 981 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 1040
Query: 242 VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
L +K +AL ++ P +QSL +++ + +Q+ ++ N + LW +W ERNNR
Sbjct: 1041 SQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNR 1100
BLAST of Lag0037785 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 2.7e-35
Identity = 104/346 (30.06%), Postives = 159/346 (45.95%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
+W+F TE + LW++ I +KY FPS ++SS+ SPW A++ F+ N W
Sbjct: 599 LWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVN 658
Query: 62 --ERVEF------SSSSASF------------------------------------DREI 121
E + F +S S D E
Sbjct: 659 DGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEK 718
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
W+ + + LP P RG W + + F T + + L A + P + + + L
Sbjct: 719 NLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP-TNFHPSLYKTL 778
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
WK D PKK K F H +NT DRLQK +P+ C +C S + I+HLFIHC
Sbjct: 779 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 838
Query: 242 VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
L +K QAL ++ P ++SL +++ + +Q+ ++ N LW +W ERNNR
Sbjct: 839 SQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNR 898
BLAST of Lag0037785 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 2.7e-35
Identity = 104/346 (30.06%), Postives = 159/346 (45.95%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
+W+F TE + LW++ I +KY FPS ++SS+ SPW A++ F+ N W
Sbjct: 693 LWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVN 752
Query: 62 --ERVEF------SSSSASF------------------------------------DREI 121
E + F +S S D E
Sbjct: 753 DGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEK 812
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
W+ + + LP P RG W + + F T + + L A + P + + + L
Sbjct: 813 NLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP-TNFHPSLYKTL 872
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
WK D PKK K F H +NT DRLQK +P+ C +C S + I+HLFIHC
Sbjct: 873 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 932
Query: 242 VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
L +K QAL ++ P ++SL +++ + +Q+ ++ N LW +W ERNNR
Sbjct: 933 SQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNR 992
BLAST of Lag0037785 vs. NCBI nr
Match:
KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 158.3 bits (399), Expect = 1.0e-34
Identity = 108/343 (31.49%), Postives = 156/343 (45.48%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISK-------------- 61
+WR+ E SLW+K I AKY+ +H P R SS+ SPW AI K
Sbjct: 428 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMAN 487
Query: 62 -------------------LQFP---FFANFRWERVEFSSSSASFD-----------REI 121
LQFP +N + V+ S D RE
Sbjct: 488 DGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQ 547
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
Q+W+ + LP + RG W S+ ++ +A+ + S P + EK L++L
Sbjct: 548 QTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHL 607
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
W++ IP+K K F H+ +NT D++QK NPS C+ CR S++ ++HLFI C
Sbjct: 608 WRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC-- 667
Query: 242 VSFLRNKIYQALGVLSAPPAT--IQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
F RN P AT ++ LC L + + I+ N + A+LW +W RN
Sbjct: 668 -PFARNLWNMWSSETGTPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIRRN 727
BLAST of Lag0037785 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 153.7 bits (387), Expect = 2.5e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
+WR+ E SLW+K I AKY+ +H P R SS+ SPW AI K + + + W +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540
Query: 62 EFSSSSASF-------------------------------------------------DR 121
SS SF +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600
Query: 122 EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
E Q+W+ + LP + RG W S+ ++ +A+ + S P + EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660
Query: 182 NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
+LW++ IP+K K F H+ +NT D +QK NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720
Query: 242 CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
L N G ++ LC L + + I+ N + A+LW +W RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780
BLAST of Lag0037785 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 9.1e-37
Identity = 105/346 (30.35%), Postives = 162/346 (46.82%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
+W+F TE LW++ I +KY SFPS +FSS+ SPW A+++ F+ N W
Sbjct: 801 LWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVN 860
Query: 62 --ERVEF---------------------------------SSSSASF---------DREI 121
E + F + SS + D E
Sbjct: 861 DGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEE 920
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
W+ + + LP P RG W + + F T + + + AP P + + + L
Sbjct: 921 NLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP-ANFHPNLYKTL 980
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
WK + PKK K F H +NT DRLQK +P+ C +C S + I+HLFIHC
Sbjct: 981 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 1040
Query: 242 VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
L +K +AL ++ P +QSL +++ + +Q+ ++ N + LW +W ERNNR
Sbjct: 1041 SQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNR 1100
BLAST of Lag0037785 vs. ExPASy TrEMBL
Match:
A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 5.0e-35
Identity = 108/343 (31.49%), Postives = 156/343 (45.48%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISK-------------- 61
+WR+ E SLW+K I AKY+ +H P R SS+ SPW AI K
Sbjct: 428 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMAN 487
Query: 62 -------------------LQFP---FFANFRWERVEFSSSSASFD-----------REI 121
LQFP +N + V+ S D RE
Sbjct: 488 DGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQ 547
Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
Q+W+ + LP + RG W S+ ++ +A+ + S P + EK L++L
Sbjct: 548 QTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHL 607
Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
W++ IP+K K F H+ +NT D++QK NPS C+ CR S++ ++HLFI C
Sbjct: 608 WRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC-- 667
Query: 242 VSFLRNKIYQALGVLSAPPAT--IQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
F RN P AT ++ LC L + + I+ N + A+LW +W RN
Sbjct: 668 -PFARNLWNMWSSETGTPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIRRN 727
BLAST of Lag0037785 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
+WR+ E SLW+K I AKY+ +H P R SS+ SPW AI K + + + W +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540
Query: 62 EFSSSSASF-------------------------------------------------DR 121
SS SF +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600
Query: 122 EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
E Q+W+ + LP + RG W S+ ++ +A+ + S P + EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660
Query: 182 NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
+LW++ IP+K K F H+ +NT D +QK NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720
Query: 242 CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
L N G ++ LC L + + I+ N + A+LW +W RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780
BLAST of Lag0037785 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
+WR+ E SLW+K I AKY+ +H P R SS+ SPW AI K + + + W +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540
Query: 62 EFSSSSASF-------------------------------------------------DR 121
SS SF +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600
Query: 122 EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
E Q+W+ + LP + RG W S+ ++ +A+ + S P + EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660
Query: 182 NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
+LW++ IP+K K F H+ +NT D +QK NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720
Query: 242 CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
L N G ++ LC L + + I+ N + A+LW +W RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780
BLAST of Lag0037785 vs. ExPASy TrEMBL
Match:
A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 7.5e-31
Identity = 92/303 (30.36%), Postives = 142/303 (46.86%), Query Frame = 0
Query: 2 IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPF-FANFRWER 61
+WR+ E SLW+K I AKY+ +H P + F + P FPF W++
Sbjct: 221 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVAGFPTMAPP--------FPFATVKEVWDQ 280
Query: 62 V----EFSSSSASFDREIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLL 121
+ +RE W + LP S RG W S+ +S +A+ +
Sbjct: 281 STDGWNINPRRPLNERENHIWESIKMSLPQIHSNRGISKPLWKPSDSNVYSVASAKDLAF 340
Query: 122 VAPSRPFYSLGEKILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICL 181
S P + EK L++LW++ IP+K K F H+ +NT D +QK NP+ C+
Sbjct: 341 KETSIPRETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMCLNPNWCI 400
Query: 182 LCRMSSKSIDHLFIHCCCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILL 241
CR S++ ++HLFI C N G+ A ++ LC L + + I+
Sbjct: 401 SCRSSNEDMNHLFILCPTAHRFWNLWSSETGIPMA-NTNVKDLCLSLCRLTGGNAKNIIS 460
Query: 242 RNISFASLWIVWNERNNRIFQDKVRSGIQLWEDVVSLAALWTKKSKAFSDYSASIIALNW 300
N + A+LW +W RNN +F +K S WED+ +L W+ KSK +YS + +ALN
Sbjct: 461 FNAARATLWTIWIRRNNLLFAEKDSSYQNAWEDICTLTGSWSSKSKILKNYSQATLALNI 514
BLAST of Lag0037785 vs. TAIR 10
Match:
AT3G25270.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 49.3 bits (116), Expect = 6.3e-06
Identity = 42/155 (27.10%), Postives = 64/155 (41.29%), Query Frame = 0
Query: 129 KILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHL 188
+I +WK K K F ++ T D L+ R N C C ++ HL
Sbjct: 13 EIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLK---RRHIRNHPQCHRCCQEDETSQHL 72
Query: 189 FIHCCCVSFLRNKIYQALGV----LSAPPATIQSLCEDLLAFKASSQRQILLRNISFASL 248
F C F ++++A G+ L T+++ E LL + RQ L N++ L
Sbjct: 73 FFDC----FYAQQVWRASGIPHQELRTTGITMETKME-LLLSSCLANRQPQLFNLAIWIL 132
Query: 249 WIVWNERNNRIFQDK----------VRSGIQLWED 270
W +W RN +FQ K R+ +Q WED
Sbjct: 133 WRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWED 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0039950.1 | 1.9e-36 | 30.35 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
KAA0044556.1 | 2.7e-35 | 30.06 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 2.7e-35 | 30.06 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0056839.1 | 1.0e-34 | 31.49 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
TYK08190.1 | 2.5e-33 | 29.74 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T9I7 | 9.1e-37 | 30.35 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7UTI6 | 5.0e-35 | 31.49 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 1.2e-33 | 29.74 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3CA17 | 1.2e-33 | 29.74 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7VIU9 | 7.5e-31 | 30.36 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
AT3G25270.1 | 6.3e-06 | 27.10 | Ribonuclease H-like superfamily protein | [more] |