Lag0037764 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037764
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr2: 8954792 .. 8957864 (+)
RNA-Seq ExpressionLag0037764
SyntenyLag0037764
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGAGTTTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTAGCCCAGGGGTAAAACGGTAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTAATTTGCTGTTGACGGTCAATATCCGTGGACACAGAAATATGTCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTTTAGTGGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAATGAGTTTAACCAACTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGGTAAAATTCTAAGGATGGATTGAATGTTCAAAGGTGTTTGAATATTATACTAAAATATGAAGTAGTTCATATTAAAACTATAGGTTATAATTAATATGCATTGGATGTATATTAATACTATAGTTTTGAGAGAGAAAATAGTAATTGAATATGTGATGTTCAATTTTATTTTATTAATTAATTTCGAATTAATTAATTAATTTAGTTTAATTAAATTTGATTTAATTAAACTATAAGATAGGAGGGATATTAATTTAAATTGGATTTAAATTAATGTTATTTTAATTCATTTAGATTAATTAAAATATAATTAATTGTAATTTTGAAATTATGATTTTAAAATTATATTTAATTAAAAATATCAGATAACTGATATTTCAGTTATCTGATATTATATTTTTTTTTAAAAAAAGGGACGTGGTCAGTGCAGTTGCACAGATCACGCCCTAGTCTCACGCCTCACTCCCTCTCTATCGCTCTCTCCTTCTGGTTTTGCTTTGTGGCAGAGGAAATCAGAGTGTTGCATCCAGAATGCTGTATTCTTGGGAGAAATTCAGAGAGAATTGGCGAAACAGTCAAGGGTTTCTACAAAGGTAAATTGTTCTTGAACTAGGGTCAATAGGACCCAATTCTAGATTAGATCTAGAATTTTTCCTCTTGTTTTTAAGCATGCTTGTATCTATTTTACAGCAGAGTATTGGCTTTTGTTATCGCTGTAAATTTATTGATTTTGCCGTCGTATTGGTATCCCAATCGGCGTTTTTTATTCGAAAAGGTCTTTGAGGTTTTCCGCTGCGCAAAGGGCTTTCATCCCTACATTAACCACTACCGAAATGTATAAATATTTCAATTCAAAGGTCAGGAGTTATAAGGAATGGTGCCGACCTTATTTATTTCTTAAAATTTTGGATTTTTTTAATCATTTTTTTTATTGACCTCCACATTAAAAAATTTCTATCAGCATTCCTTGCGACCTGCCCACGTTACCATAGTCCTTTTAGCATCTCACTCACATGCTCCCTACGAAAATTCTCAGGAGGTCACCCAACATAGAACTTCTCCAAGCCAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATACTTTCATGTCCTTAGGATCCCTCTCATTCAGATGTGATCTCAATTCATTCATGTACCCCTCCTAACTCGGGTGTTACAGAGAGTCTATGTCTTAACCAACTAAGCTATACTCATGTTGACAAATTTTATCAATATTATTAGTCCAATAAAAATAAAATAGTTTTATTTCTAGTTATATGAACTTTTATATTATGAAGTAGGTTAATTGAGGTGGACATTAAGTGTTGGGTGACATGAATTTAAGTCTCCACTTTAGTAAATATCTAGCTCGCCAAAACCTATGGCATCAAACACACACATATAGATGACTATGTTTTTACCATGTGCATTGCACGTGTAATAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGGACAGCTTTTAATGACGGGCATTGCCCGTCATTAAAAGTCACACGTCATAACAACTTACGACGACACTCGTATAGATCACGGACGCCGCCCGTCATGAAAAGTCTTTAATGACGGGCATTTGCCCGACATTAAAAGTGATTTTTGTAGTAGTGATGCAATCTTAATTTAAAATGTTTTCAGGAATCCTGGCCTTTTAATATAGTATAGATATATATATTAAATTTCGAAATTTGACTCTGGAATTTGAAAACTAATTATGTAATTATCTGAAATTTAAAAGGGTATTCTGGTCTAAAAATGTTTTTCAGGAATCCTGGTCTTTTAATATAGTAAGTATAGATAAAATTATGACCACCATGACTAAAATACTTATATTAAGAGAGAGAAAAAAAACTAGACATTTGAAAGTATAAAAAGAAAATTTAAATCAATGTTAGATATTTTAACTTAAAACAAAATCTAATAATAGATTTTGAACTTTCAAAGTTGTCTTACCAATATTTAATAAGTCATTCAACTTTCAATTATTAGTGAAATAAGTATTTAGTTTTCAATTTTATATATCTAATTAACTAATCCTCAAAACTTAGTGAACACAAAATTATAAGCTCTAACTTGCAGGTAGAGATTGTAATTGTTATAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCGAGTGGGATGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGACCTCGGCCCATGGCCGAGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATCCCTAAAAACCAAGGAGGATGA

mRNA sequence

ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGGACGTGGTCAGTGCAGTTGCACAGATCACGCCCTAGTCTCACGCCTCACTCCCTCTCTATCGCTCTCTCCTTCTGGTTTTGCTTTGTGGCAGAGGAAATCAGAGTGTTGCATCCAGAATGCTGTATTCTTGGGAGAAATTCAGAGAGAATTGGCGAAACAGTCAAGGGTTTCTACAAAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCGAGTGGGATGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGACCTCGGCCCATGGCCGAGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATCCCTAAAAACCAAGGAGGATGA

Coding sequence (CDS)

ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGGACGTGGTCAGTGCAGTTGCACAGATCACGCCCTAGTCTCACGCCTCACTCCCTCTCTATCGCTCTCTCCTTCTGGTTTTGCTTTGTGGCAGAGGAAATCAGAGTGTTGCATCCAGAATGCTGTATTCTTGGGAGAAATTCAGAGAGAATTGGCGAAACAGTCAAGGGTTTCTACAAAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCGAGTGGGATGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGACCTCGGCCCATGGCCGAGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAATCCCTAAAAACCAAGGAGGATGA

Protein sequence

MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPSLSLSPSGFALWQRKSECCIQNAVFLGEIQRELAKQSRVSTKAILDHPDIQGADEDNRGEIGLKDGPRRQNRRVGWAKTEGVGFLARPPARPRPMAEAESVRCRLVPTAFGRLGFAWFDLKRLRIPKNQGG
Homology
[Close]
BLAST of Lag0037764 vs. NCBI nr
Match: KAA0026081.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-12
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ 52
           MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R R Q
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLPVFRPRLQ 143

[Close]
BLAST of Lag0037764 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR 48
           +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Sbjct: 566 IRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]
BLAST of Lag0037764 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 3   DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR 48
           DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0037764 vs. NCBI nr
Match: TYK08698.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-07
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALV 60
           +RDCPLICTGESGQ ADSI L FWGQDR+G W+          P + GR   + T    +
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPL-GRRHTTATAARRI 367

Query: 61  SRLTPS 67
             L PS
Sbjct: 368 VELQPS 372

[Close]
BLAST of Lag0037764 vs. NCBI nr
Match: KAA0049822.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-06
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDR+G W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

[Close]
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ 52
           MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R R Q
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLPVFRPRLQ 143

[Close]
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR 48
           +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Sbjct: 566 IRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 3   DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR 48
           DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match: A0A5D3CBX3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00530 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALV 60
           +RDCPLICTGESGQ ADSI L FWGQDR+G W+          P + GR   + T    +
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPL-GRRHTTATAARRI 367

Query: 61  SRLTPS 67
             L PS
Sbjct: 368 VELQPS 372

[Close]
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match: A0A5A7U202 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00150 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-07
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRMGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDR+G W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

The following BLAST results are available for this feature:
BLAST of Lag0037764 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026081.12.8e-1272.55pol protein [Cucumis melo var. makuwa][more]
TYK05792.11.1e-1170.21gag/pol protein [Cucumis melo var. makuwa][more]
KAA0047821.11.7e-0971.11uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa][more]
TYK08698.12.0e-0750.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0049822.11.3e-0678.79reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Lag0037764 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0037764 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SPG11.3e-1272.55Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=... [more]
A0A5D3C3J65.1e-1270.21Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7U2P48.1e-1071.11Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CBX39.9e-0850.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7U2026.4e-0778.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037764.1Lag0037764.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding