Lag0037641 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037641
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	chr2: 7959324 .. 7965462 (+)
RNA-Seq Expression	Lag0037641
Synteny	Lag0037641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCCAGAGAAGGTACACGATGGTTCTGCCAACGAGGACAACGATGTCTCTGCCAACGAGGACAGCAACGTCTCTGTCGAATTGCAGACTTCCATTAGTCCAAATGGTGATCTACAGGAAGGAGATGATCTTGCAAATATGAATTTGGGGAACTCTAATGCTCTGGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTAATGATACTCTCAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGACTTACTTCAGGCAGGATTATATTTGTTTTATTTGTTTTATCATATAAAATAGAATTGCTTTCTTGTACTTTGACTAATTATAATATAGCTTTTAAGATTGTGTCACTTGCTAGGTTTAAGGGAATTTTATACACAATAAATGATATTCTCTCATAATTTACCTGTTTTCTTGTCTTGGATGCAAAATATGCAGTTTCTGAATTTCATGGCTTTTTCTATGGTGTGAAAAGTTATTATTTCAACTTTTAACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAATGTAAGAAAAAGAGTTTTGTCTCTAAATTCCATCTTAAGATCAATACAGCGAAGAGTGGATAACATAGATCGGGTGATCTCAATAGGCAAGCTACCAGGTGACTGAATTCTTTCTTCAAGGGCCTCAATTTTATTATCTTTTATTTTATGGCTTCTAATTTAATGGAAACTTATTGGATAATATTCATTGGCTGTCAAGGTTTGTTCAGTAATGTTCCTATTTCCTATTTCTAAAAAGTCATGTATGTGATGATGATTATTTGTTTCTTATTCTCTCCATTTTATTGGAAAAAAGGTTGTTATCACAATTTTTTTTTTTTCTATTTTGTGTTCTCTATTGATTCAACATAGAAATGATGAGTGAGCGTCTGATGACGTTTTTGAGTTGGCCCTTGGTCCTTCTGGCATTCCCTATATTATTCTTTTTGTAATTATACATATTTTGTAATAAAATCTAATTGGGGCTATTTCTGTAAGCTCCTAATTGTGAATCTCATATTATATATGTGTAGCAAACAAGAGCTTAGCTCAATTGGCACAAAGCATGTACCATCGACCAAGAGTTCAGAAGTTCAAATCCTCCATCCCACATGTTGTCAAAAGAATATTATATATGTGTAACTTTCCACTACATCAATGGACTGTGTGGAATCTTTTACTCTTCAACTCTTCGGATAGGGAAATAGAATCAAGAGATTCATTGGAAAACCTCAGTTGTTCCTTCTTATGGAAGATTTTAAATCATCTCGTTAACATGTGGAGCAAGGAAAATTTTACTGATGATTTTGAACCTACCCCGCAAGGAAAATTTTACTGATGATTTTAAACCTACCACAAGGATCTTTTACTCTTGAATGGAGAAAAATGGAATTGAGATACTCATTGCAAAACCTCAGTTGTTTCTTCTCGGGATTTCTTATTCAAATGTCAAATGATGTTTCTTTTTTAATACATAAAGCATTTGGACATGTACCTAATGTGTCTCTGTCCAACAATTTTGTAAAAAGGCACGTTTCTCCGTTGAAGGAGACTGATGTAGGCTTTTGAAAAGTTTATGAAAATAAAGGCTAATAATCTGTTCTCTTGTGTTCAAATAGTAGTTTCTGAGGAGGAATGATTTGTTATAATCGTGCTTCTTAGGTTATAAATCATGATTTTGTTTTGCTCTCTGAATGTTTGAGCTTACTTTTGGTAATGCAGCCATAGGACAAAATCATCTTGCAACCGTTCAGGGTAGTCATGCATGCAATCCACCTGAAGCTCTGAGTGATATTTTTTTTTAAAGAATTTATTATTATTATTAATTTGGTCAACATATCATCTTTTTAACCATAATAAGTCGGAAGGAAATTTACATGTAATGTTTTCTACCTTCTTCTCCTCTCTTCCAATGTCCATTGCCTGTTATCTTTCCACTGCCTGTGCCATTATCTCCTATAGGCGCAACTTGAGGAGATCCTTCTCTCGGAAGATGGAATAAGAGAAAGAGAGGAGAAGAGGGAGTAGCACCAAAACAAATGGAAGTCGATTCATGGTAGGCAGTAGTGTTTGGATGTGGGAATTAGGTTAATTTTGGCATTGAGTACGCGATGAAAGACTGACTTTTGACTTCAAAGGGCAATGTGTGAAGAATGAAGTAAAATTTTAGAGTGGCTCCAAATAGAGAAAGCTTATCTTCAAAAACTCTGGTCCCATCACTGATACTAAGATCTTATGTGGACTTGCAAATTTAAGAGATACTACCCTACTAGAATCAGTGCCTCGTGTTTTCATGGCTTCTATGGATATATATATTCTTTTTCATTCTCTTTTCCTTTCCTTTACCTCTTCCCTTCCTTTCTCCATTTTCTTGTCTGCTGCAATTAATGATACAAGTGATAGTCTTCATAGATTCAGTTTTCACTCTACCGAATAGCATTGAAAGGAAGGCTCCTTCAGATTGCTGTCTCATAATTTGGATCTTCACCAAATGTTTAGAAACTAATTGCTTATTTGACCATTCACGACTATTGGACAAATTTTTCGATGTGGCTGTCTTTTCAAAACCGTCGGATGTACATCTTAAAATTTGTTTGCCCCTAATAACGGTTAGATACATAATCGAGGTACTTTTACAATTTCTTTCTCATACATCTAACAATGCAAAATTGTCAACCTCATTGTAGTGGCCTCTTCAAATAATTTCTCCAACCAGTGGGGGTAACATTTTGTCGCCCATTTGGCTGATTGTTTATTATACATTGAACTATAAATTAATTAGCGTGAGTATAAGCTATCCCATGTTATATTTTTCCTTGTCTCATTGTCACTAAAGTCTACCTGTTGTCTACAGATACGCGTTCCTCCCCTAGTTCCTCGCAACCTCAGAATGGTTGAAGATTGTAAGTATCTGGACTCCCTTTTCTCTCTTCATTCCATGTATCCGAAGTTTTGGCAATTGTATCCTTTCACTGCCCCCCTCCATTTTTATTACCAGGCTTGAAAATACTGGGATAGAAATGCTAGGGTTTCGGTTCTCTTTCTCCCTCTGTCTCTCATCATATATATACATACAATCAGCATAGTTTGTGTCTGGTGAGTAGGAGTTTTGGTTCTCGAATCTGGTGGTTCATGCAGATTATTTTATCACTTTTGTTTCTAAGAGAAGGTTGATTATAATGGGATTTTTCATTTGGTATTAGAGTTGACAAAAAAATTGCATCTATTGTAAGAGGGAATATATATTATACTTCCAGTTTCTATGAATTCGAACTAGATTTTGTGTAGTGGTTAAACAATGTCAATCTTCTTAACATCACTTCAAAGGAGCTGGCGTTGGGGTTTTTGAGGCACTTGCCATTCATTTTTTAATGTGTTTTGATTACAATATTTCTCTTCATTTTACAGCATTTCACAAGAAATTCGTTTGTTTTATTTGAAGTTGGAAATTTGTAGTGTGATTACTTGACTAATAAAGAAATTTGTAGTGACTCCAACAAAATGCATCATGAACATTTTTTTTTCCTTCTCCTCAGTACATAAAACGTACATTGAAGAGGGAGAAAGAAAAAAGAGAGGGAAATATGCCTGTCACAGGATATTTGAAGGAGGCATCGTGGTGGAGTAAGATTAAAAGAGTTATATTATTTATGTTAAAGGTCGTAGTTTGAAGGTGATATTAAAATTATATTTTTCACCTTTTCATAATGAGATTTTCATTTGTTTAAATCTGATGACGAGTTTGTCGAAGTCAAGTTTTGGTTTAGATCGCTTTGGTCTCTAAATTGTCAATTTTGTTCTATTTTGATCTCTAAATTGTCATCTTTATTCTATTATAATCTCGAAATTTTCAATGTTAATGACTTAAAAGATCAAATATGTGACCTTTGTTGTAAGATGTCATTTGACATTTTTTTTCCACCATTATGGGATGGGAGATGAACCATCAACCTCTAGAAAGATAATCGGTGCCTTATCCATTTAATCAATATTTCAATATACATATTATATAAATATGTATTTAAATATGATGGTTAGAAGTTCCCTTTGATAATTTAATTCTTATTAATTTTAGTATTTTTTTTTTCAAAATTCTTTTTGGCATTGACCTTTATATATAAATATTGTACATATTTTAGTTATAATTATAAAAAATGTTTAATTATAGCTTTTTTTTTTTTAAAACTATTTAATTGTAGTTTATAAATTCACATTTTTATGGATTATTTCAAACAATTTCCATTTTTTCTACAAAGTTTATCGAAATTTATTGACATTTTCATAAAATCTAGACCACAACATTTCAAACATTGACTATATTTAAATTTTGTTAGTAACCCTATATTTGTACTTGTCGTTCAAATTAAACTTGAGAAAAAAAGTAATTTTTTGTCAATATTTAATATTGAATTTCTTACTCTTTTTTCTCGAGTTTAACCACAATTGGAGAAGTGGAGATTCAAACTTTCGACATCTTGGTCGAGGTTACATGTCAATTATCATTGAGTTAAGTTCACTTTACATACACAACATTTTAGATCTAATCTAATTTGAAGGTAAAAGTAAATTAAATGAAATGTCAAACTAAATCACAATAAGTTGTAATATATATAATTTTTTTTAAAAAAATATATAAATTTTTATTTCTCGAGATACATATAACTTGTTTTAATTTTTTTAAGCTTGTTTCAAACTGAAATAAGTACCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATATGAATAATCACAATGAATATTTGTTTCTAAGGTTGGAGAAAGACTAAAATGACCTTCTGACTCGGTCAACACTCACTAGTAAGGTTTAGGGTTCTGATATCCGCTATAAATAGGATGACGCCCACGACATTATCGTCTCAGTTTGTACTCTTCATCGACAATCGAGAGAGGCTGAAGGATCGATCGTCGGTCATTGTTCTTCTGAGACAAAGCTTGTTCGTCTTCGACAATGAGAGCTAAGGTTCATCTTCCTAATTTTCCTCATCTTACGTCGATTATATTTGGTTTAAGCGGTTTCGTTCTCAGAACTTTTTCCTTTCATTTTTCTCAATGTTCTGTTTATGCTCTGAGGATTTAGATACCGAGATTTGTTTTTGTCGCGATCGGAGTCGAAAGTGTGCCCTAGCTTTTTTCAGGTCTAATAATTTGATGTATTTTCCTAACTGTGTTCGTTTCTTCGTACTCCTTGCGAATCAAAACTTGTTTTTCTTCTTACTTTTTACGAATCAAAGTTTTTTGTTAATGTTGTTAGGGTTTATGATTTTGAAAACACGTCTAGGGTTATCTGGTATTATCCTGGGATGTATTTTAGCGCAATCGGAATGCCCTAATTTTTTAGGTCTAACAACGTGGTGTTTTCCCAATTCCGCTCGTTTCTTGCTCCTGAATCATAAGCTACTTGTTCTTGCTTCCAAACGGGTTTAGGGTTTCCGGCTATTTTTTTTTTTGTTTGATCGAACGTTATCGGTATACGGGGTAGGTTTAATATTATTGAAGTCTTCGAAGCGATGAAGATATATAACTTTTAAGTGTGAAGACACGGGGTGACGAGTTCCGGTAGCTTTTTTTTTATTATTTATTTATTTTTATTGATGTACTTTTACATTTTGTCTCTTTACCTAATGAGTGCCATAAGTTATGAATTTGTAATTTGCTTCTGGTGAATTGTTGTTCATGTGTTCTTTTCATACACAAGATATCAACATACAGGAGACTTAGTTATTTTTTTGAACTCTTGGAGCTCAGTGGGGCTTATTTATATAGGTTTTTCTTTTTGCTTTCAACCTGAAATCTATATTGGAATAGCATGCATTCTTATCTATCATTCACCACTGCATGGAAATTTATTTTACTTTTTTTGGTTCAGAATTCTTTTTTGAGTCTTTGTTCTCTGTTATTGGTTATGAATTCTTATTTTCTTCTCTCCTATTTATCTTACTTCTGTCTTTTTGGGTGGTTCTGAATGCCAGTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGAAAGCGCCGAAAGATGAGACAGAGATCTAA

mRNA sequence

ATGCACAGTCCAGAGAAGGTACACGATGGTTCTGCCAACGAGGACAACGATGTCTCTGCCAACGAGGACAGCAACGTCTCTGTCGAATTGCAGACTTCCATTAGTCCAAATGGTGATCTACAGGAAGGAGATGATCTTGCAAATATGAATTTGGGGAACTCTAATGCTCTGGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTAATGATACTCTCAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGACTTACTTCAGGCAGGATTATATTTATACGCGTTCCTCCCCTAGTTCCTCGCAACCTCAGAATGGTTGAAGATTTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGAAAGCGCCGAAAGATGAGACAGAGATCTAA

Coding sequence (CDS)

ATGCACAGTCCAGAGAAGGTACACGATGGTTCTGCCAACGAGGACAACGATGTCTCTGCCAACGAGGACAGCAACGTCTCTGTCGAATTGCAGACTTCCATTAGTCCAAATGGTGATCTACAGGAAGGAGATGATCTTGCAAATATGAATTTGGGGAACTCTAATGCTCTGGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTAATGATACTCTCAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGACTTACTTCAGGCAGGATTATATTTATACGCGTTCCTCCCCTAGTTCCTCGCAACCTCAGAATGGTTGAAGATTTGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGAAAGCGCCGAAAGATGAGACAGAGATCTAA

Protein sequence

MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANGLSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTSGRIIFIRVPPLVPRNLRMVEDLEEEAYEEAEEKAPKDETEI

Homology

[Close]

BLAST of Lag0037641 vs. NCBI nr
Match: XP_038897519.1 (uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANG 60
          MHSPEK+       D D SANE+SNV  EL+TSISPNGDLQEG+D  N NLGNSNALANG
Sbjct: 1  MHSPEKL-------DGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANG 60

Query: 61 LSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTS 96
          LSSMLINIIRDFDSKA+DTLKSQSQLSSSLDRLT+
Sbjct: 61 LSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTT 88

[Close]

BLAST of Lag0037641 vs. NCBI nr
Match: XP_038897517.1 (uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANG 60
          MHSPEK+       D D SANE+SNV  EL+TSISPNGDLQEG+D  N NLGNSNALANG
Sbjct: 1  MHSPEKL-------DGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANG 60

Query: 61 LSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTS 96
          LSSMLINIIRDFDSKA+DTLKSQSQLSSSLDRLT+
Sbjct: 61 LSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTT 88

[Close]

BLAST of Lag0037641 vs. NCBI nr
Match: XP_038897521.1 (uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANG 60
          MHSPEK+       D D SANE+SNV  EL+TSISPNGDLQEG+D  N NLGNSNALANG
Sbjct: 1  MHSPEKL-------DGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANG 60

Query: 61 LSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTS 96
          LSSMLINIIRDFDSKA+DTLKSQSQLSSSLDRLT+
Sbjct: 61 LSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTT 88

[Close]

BLAST of Lag0037641 vs. NCBI nr
Match: XP_038897518.1 (uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANG 60
          MHSPEK+       D D SANE+SNV  EL+TSISPNGDLQEG+D  N NLGNSNALANG
Sbjct: 1  MHSPEKL-------DGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANG 60

Query: 61 LSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTS 96
          LSSMLINIIRDFDSKA+DTLKSQSQLSSSLDRLT+
Sbjct: 61 LSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTT 88

[Close]

BLAST of Lag0037641 vs. NCBI nr
Match: XP_038897522.1 (uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MHSPEKVHDGSANEDNDVSANEDSNVSVELQTSISPNGDLQEGDDLANMNLGNSNALANG 60
          MHSPEK+       D D SANE+SNV  EL+TSISPNGDLQEG+D  N NLGNSNALANG
Sbjct: 1  MHSPEKL-------DGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANG 60

Query: 61 LSSMLINIIRDFDSKANDTLKSQSQLSSSLDRLTS 96
          LSSMLINIIRDFDSKA+DTLKSQSQLSSSLDRLT+
Sbjct: 61 LSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTT 88

The following BLAST results are available for this feature:

BLAST of Lag0037641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897519.1	2.8e-27	78.95	uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]	[more]
XP_038897517.1	2.8e-27	78.95	uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]	[more]
XP_038897521.1	2.8e-27	78.95	uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]	[more]
XP_038897518.1	2.8e-27	78.95	uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]	[more]
XP_038897522.1	2.8e-27	78.95	uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]	[more]

BLAST of Lag0037641 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 14..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037641.1	Lag0037641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex