Lag0037556 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037556
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 7212188 .. 7212661 (-)
RNA-Seq ExpressionLag0037556
SyntenyLag0037556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCAGATAACTGCCATGAACGGCCAGGATTTAAATCAGAAATCTGGAATGAATCAGCACTTCACACTCCGTATCCCCATTTCCCCACAGTCAGAGTCGCCCGCCCAGTTCCAAGCCCGAACGTCGATCCGTATGGTAAAGCCCATAGCCATTCTCTGCTTTCGCCATCATTCATTCGTTGCTTTGCTTCGCTCTGAAAATTTTATACAAAATCGCTTTTAACTGAAGCTGATTCGCTTTTGTAGGCTGAAAGTTCAATCTCTTCCCGCATTGACGCCTCCGCCTGATTCCGTTTCCACTCATAAATTTGGTCGCTTCCTTCCTCCATACTCGGATATTACTATTGCGAGCTGCTTTTCGCTACGCGTCTGTTTCTGGATCTTGATCCTTCGTCTTTGTCAATGTGGAATCTCTGAATTTGCCTCTTCTTGCTCTGTTTTTGGTTGCATCGGCGGCGAGGGAAGAAACTGA

mRNA sequence

ATGAGTCAGATAACTGCCATGAACGGCCAGGATTTAAATCAGAAATCTGGAATGAATCAGCACTTCACACTCCGTATCCCCATTTCCCCACAGTCAGAGTCGCCCGCCCAGTTCCAAGCCCGAACGTCGATCCGTATGCTGATTCGCTTTTGTAGGCTGAAAGTTCAATCTCTTCCCGCATTGACGCCTCCGCCTGATTCCGTTTCCACTCATAAATTTGGTCGCTTCCTTCCTCCATACTCGGATATTACTATTGCGAGCTGCTTTTCGCTACGCGTCTGTTTCTGGATCTTGATCCTTCGTCTTTGTCAATGTGGAATCTCTGAATTTGCCTCTTCTTGCTCTGTTTTTGGTTGCATCGGCGGCGAGGGAAGAAACTGA

Coding sequence (CDS)

ATGAGTCAGATAACTGCCATGAACGGCCAGGATTTAAATCAGAAATCTGGAATGAATCAGCACTTCACACTCCGTATCCCCATTTCCCCACAGTCAGAGTCGCCCGCCCAGTTCCAAGCCCGAACGTCGATCCGTATGCTGATTCGCTTTTGTAGGCTGAAAGTTCAATCTCTTCCCGCATTGACGCCTCCGCCTGATTCCGTTTCCACTCATAAATTTGGTCGCTTCCTTCCTCCATACTCGGATATTACTATTGCGAGCTGCTTTTCGCTACGCGTCTGTTTCTGGATCTTGATCCTTCGTCTTTGTCAATGTGGAATCTCTGAATTTGCCTCTTCTTGCTCTGTTTTTGGTTGCATCGGCGGCGAGGGAAGAAACTGA

Protein sequence

MSQITAMNGQDLNQKSGMNQHFTLRIPISPQSESPAQFQARTSIRMLIRFCRLKVQSLPALTPPPDSVSTHKFGRFLPPYSDITIASCFSLRVCFWILILRLCQCGISEFASSCSVFGCIGGEGRN
Homology
[Close]
BLAST of Lag0037556 vs. NCBI nr
Match: KAG7031690.1 (hypothetical protein SDJN02_05731, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-18
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 47  LIRFCRLKVQSLPALTPPPDSVSTHKFGRFLPPYSDITIASCFSLRVCFWILILRLCQCG 106
           LIRF RLK+QSL AL PPPDSVSTHK  RFLPP S+IT+ SCF  R+CF +LI R+ QC 
Sbjct: 55  LIRFRRLKLQSLSALAPPPDSVSTHKLFRFLPPNSEITVLSCFLRRICFSVLIFRVGQCC 114

Query: 107 ISEFASSCSVFGCIGGEGRN 127
            SEF    SV GCI GE R+
Sbjct: 115 TSEFVFCFSVVGCIDGERRS 134

The following BLAST results are available for this feature:
BLAST of Lag0037556 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031690.13.7e-1865.00hypothetical protein SDJN02_05731, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lag0037556 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037556.1Lag0037556.1mRNA