Lag0037546 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037546
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutaredoxin-like protein
Location	chr2: 7124101 .. 7125244 (+)
RNA-Seq Expression	Lag0037546
Synteny	Lag0037546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAACTTCCTAAAGAAAACTGCAATGGTAGTTTATCAACCACTCACAAGAACATCGAGATCTTCGACTTAGCTCCCAAAGGTAATCCACCGAGCCCTTCCCCAACCTATGCAAGGGGAGCGAAAGATAACATAAGGGAGACAAAGTCCTAACTAAATCAAAGTCCTAACTAAATCACAACACAGGCTAACCATTGACTCTCTAAAAAAAAAGTCAAAAGTCAAACCTAACTTAAAACTAGCTTTATCATTATTATTGTGTAAGTTTACCTTAAAATAAAATTTCAAACTATATTTCAAAAAAAAAAAAAAAATCAAACTAATTTGTTGTATTATATATTTATGTACCTATGTCTCTAAAGTAAATAGGTATTTGTACTAATTTTTATCGATTGGGAACGAGTTTTTAAATAAATAAATAAATTAACATCAATATTAATTTAACCTAGCAATTTTATCTCAAAATAATAATAATGAGAATAATAGCAATTAACTCTAAAAATCAACCCTGAAAAATAAATTTTAGAAACCATTTTTCTCCGAAGCCGTTGGATTCCCAGTTGAAAGAACCCAATTCCAATTTCCAATCACAGGGCAACTCGATCCTGTAAGAATGATATCTACAACTGTTGCGACAATTTCGCGACCTTCTTCAACATTACTGCTACAAGCGCAAAGAGCCCATCGAATTTTGATTCCTTCAGCTTCATTCTCTTCATCTTCTTCTTCACTTCCCTCTCGCAAACTGATTCTGTATTCCAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTGCAGGCCGCCTTTCTGCTCGCCGGCCCTAATTCTCTCCACGACGTCGATTTGCAGGCACTCATTTCAGTCCCCTCTCATTGTATTTGTAATTCGTTTCCTGTTTGAAGCATTTCGATTTAATTTATGTTGTCTGGTTTCAAGTAGGTGAGGGATATCACTACTAATCCGGAATGGGAGCGAGCTTACCAGTATGAGATTCCCGTGCTGGCGAAAGTGCTCTCGGATGGCTCGGAGGTTGGTTCTATTCATTCATTTGTTCATTCATTCATTCTTGTGATTCCGATTACTATGAGCCTGTATTTTGACGGGTTTAAGTTATTCGGGAAGGAATGTGTCTAA

mRNA sequence

ATGTCGGAACTTCCTAAAGAAAACTGCAATGGTAGTTTATCAACCACTCACAAGAACATCGAGATCTTCGACTTAGCTCCCAAAGGGCAACTCGATCCTGTAAGAATGATATCTACAACTGTTGCGACAATTTCGCGACCTTCTTCAACATTACTGCTACAAGCGCAAAGAGCCCATCGAATTTTGATTCCTTCAGCTTCATTCTCTTCATCTTCTTCTTCACTTCCCTCTCGCAAACTGATTCTGTATTCCAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTGCAGGCCGCCTTTCTGCTCGCCGGCCCTAATTCTCTCCACGACGTCGATTTGCAGGCACTCATTTCAGTGAGGGATATCACTACTAATCCGGAATGGGAGCGAGCTTACCAGTATGAGATTCCCGTGCTGGCGAAAGTGCTCTCGGATGGCTCGGAGGTTGGTTCTATTCATTCATTTGTTCATTCATTCATTCTTGTGATTCCGATTACTATGAGCCTGTATTTTGACGGGTTTAAGTTATTCGGGAAGGAATGTGTCTAA

Coding sequence (CDS)

ATGTCGGAACTTCCTAAAGAAAACTGCAATGGTAGTTTATCAACCACTCACAAGAACATCGAGATCTTCGACTTAGCTCCCAAAGGGCAACTCGATCCTGTAAGAATGATATCTACAACTGTTGCGACAATTTCGCGACCTTCTTCAACATTACTGCTACAAGCGCAAAGAGCCCATCGAATTTTGATTCCTTCAGCTTCATTCTCTTCATCTTCTTCTTCACTTCCCTCTCGCAAACTGATTCTGTATTCCAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTGCAGGCCGCCTTTCTGCTCGCCGGCCCTAATTCTCTCCACGACGTCGATTTGCAGGCACTCATTTCAGTGAGGGATATCACTACTAATCCGGAATGGGAGCGAGCTTACCAGTATGAGATTCCCGTGCTGGCGAAAGTGCTCTCGGATGGCTCGGAGGTTGGTTCTATTCATTCATTTGTTCATTCATTCATTCTTGTGATTCCGATTACTATGAGCCTGTATTTTGACGGGTTTAAGTTATTCGGGAAGGAATGTGTCTAA

Protein sequence

MSELPKENCNGSLSTTHKNIEIFDLAPKGQLDPVRMISTTVATISRPSSTLLLQAQRAHRILIPSASFSSSSSSLPSRKLILYSKPGCCLCDGLKEKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSEVGSIHSFVHSFILVIPITMSLYFDGFKLFGKECV

Homology

[Close]

BLAST of Lag0037546 vs. NCBI nr
Match: XP_023522644.1 (uncharacterized protein LOC111786639 [Cucurbita pepo subsp. pepo] >XP_023522650.1 uncharacterized protein LOC111786639 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 98/116 (84.48%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 36  MISTTVATISRPSSTLLLQAQRAHRILIPSASF-SSSSSSLPSRKLILYSKPGCCLCDGL 95
           MIS TVA ++RPSS LLL AQR HRIL P+ASF SSSSSS+ SRKLILYSKPGCCLCDGL
Sbjct: 1   MISATVAIMARPSSMLLLAAQRGHRILTPAASFSSSSSSSVSSRKLILYSKPGCCLCDGL 60

Query: 96  KEKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSE 151
           KEKLQAAFLLAGP+SLHDVDL     VRDITTNPEWERAYQYEIPVLAKVLSDGSE
Sbjct: 61  KEKLQAAFLLAGPDSLHDVDL----LVRDITTNPEWERAYQYEIPVLAKVLSDGSE 112

[Close]

BLAST of Lag0037546 vs. NCBI nr
Match: XP_022981072.1 (uncharacterized protein LOC111480330 [Cucurbita maxima] >XP_022981073.1 uncharacterized protein LOC111480330 [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-42
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 36  MISTTVATISRPSSTLLLQAQRAHRILIPSASFSSSSSSLPSRKLILYSKPGCCLCDGLK 95
           MIS TVA +SRPSSTLLL AQR  RIL P+ASFSSSS S  SRKLI+YSKPGCCLCDGLK
Sbjct: 1   MISATVAIMSRPSSTLLLAAQRGRRILTPAASFSSSSVS--SRKLIMYSKPGCCLCDGLK 60

Query: 96  EKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSE 151
           EKLQAAFLLAGPNSLHDVDL     VRDITTNPEWERAYQYEIPVLAKVLSDGSE
Sbjct: 61  EKLQAAFLLAGPNSLHDVDL----LVRDITTNPEWERAYQYEIPVLAKVLSDGSE 109

[Close]

BLAST of Lag0037546 vs. NCBI nr
Match: XP_022939983.1 (uncharacterized protein LOC111445753 [Cucurbita moschata] >XP_022939984.1 uncharacterized protein LOC111445753 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41
Identity = 98/118 (83.05%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 36  MISTTVATISRPSSTLLLQAQRAHRILIPSASF---SSSSSSLPSRKLILYSKPGCCLCD 95
           MIS TVA +SRPSSTLLL AQR  RIL P+ASF   SSSSSS+ SRKLILYSKPGCCLCD
Sbjct: 1   MISATVAIMSRPSSTLLLAAQRGRRILTPAASFSSSSSSSSSVSSRKLILYSKPGCCLCD 60

Query: 96  GLKEKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSE 151
           GLKEKLQAAFLLAGP+SLHDVDL     VRDITTNPEWERAYQYEIPVLAKVL DGSE
Sbjct: 61  GLKEKLQAAFLLAGPDSLHDVDL----LVRDITTNPEWERAYQYEIPVLAKVLPDGSE 114

[Close]

BLAST of Lag0037546 vs. NCBI nr
Match: KAG6608053.1 (hypothetical protein SDJN03_01395, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031682.1 hypothetical protein SDJN02_05723 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-41
Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 36  MISTTVATISRPSSTLLLQAQRAHRILIPSASF---SSSSSSLPSRKLILYSKPGCCLCD 95
           MIS TVA +SRPSSTLLL A+R  RIL P+ASF   SSSSSS+ SRKLILYSKPGCCLCD
Sbjct: 1   MISATVAIMSRPSSTLLLAAKRGRRILTPAASFSSSSSSSSSVSSRKLILYSKPGCCLCD 60

Query: 96  GLKEKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSE 151
           GLKEKLQAAFLLAGP+SLHDVDL     VRDITTNPEWERAYQYEIPVLAKVL DGSE
Sbjct: 61  GLKEKLQAAFLLAGPDSLHDVDL----LVRDITTNPEWERAYQYEIPVLAKVLPDGSE 114

[Close]

BLAST of Lag0037546 vs. NCBI nr
Match: XP_022141297.1 (uncharacterized protein LOC111011727 isoform X1 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-40
Identity = 94/116 (81.03%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 36  MISTTVATISRPSSTLLL-QAQRAHRILIPSASFSSSSSSLPSRKLILYSKPGCCLCDGL 95
           MIS T   I+RP+S +LL  AQR  RILIPSASFSSSS++ PSRKLILYSKPGCCLCDGL
Sbjct: 1   MISATATAIARPASRVLLTTAQRTRRILIPSASFSSSSAA-PSRKLILYSKPGCCLCDGL 60

Query: 96  KEKLQAAFLLAGPNSLHDVDLQALISVRDITTNPEWERAYQYEIPVLAKVLSDGSE 151
           KEKLQAAFLLAGP+SLHDVDLQ    VRDIT+NPEWERAYQYEIPVLAKVL+DGSE
Sbjct: 61  KEKLQAAFLLAGPDSLHDVDLQ----VRDITSNPEWERAYQYEIPVLAKVLADGSE 111

The following BLAST results are available for this feature:

BLAST of Lag0037546 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522644.1	2.4e-42	84.48	uncharacterized protein LOC111786639 [Cucurbita pepo subsp. pepo] >XP_023522650....	[more]
XP_022981072.1	5.4e-42	85.22	uncharacterized protein LOC111480330 [Cucurbita maxima] >XP_022981073.1 uncharac...	[more]
XP_022939983.1	1.2e-41	83.05	uncharacterized protein LOC111445753 [Cucurbita moschata] >XP_022939984.1 unchar...	[more]
KAG6608053.1	3.5e-41	82.20	hypothetical protein SDJN03_01395, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022141297.1	6.6e-40	81.03	uncharacterized protein LOC111011727 isoform X1 [Momordica charantia]	[more]

BLAST of Lag0037546 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008554	Glutaredoxin-like	PFAM	PF05768	DUF836	coord: 79..147 e-value: 4.8E-16 score: 58.9
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 72..160 e-value: 6.0E-15 score: 56.9
None	No IPR available	PANTHER	PTHR33558	GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG	coord: 45..154
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 68..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037546.1	Lag0037546.1	mRNA