Lag0037532 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037532
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	O-fucosyltransferase family protein
Location	chr2: 7046098 .. 7046580 (-)
RNA-Seq Expression	Lag0037532
Synteny	Lag0037532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCCAAAACCCTCCATTACCATGGCCATGATGCCGCCAATTGCGACGGCGCTCAGAGCAGTGGCAGTAACTCTCCGAGTCCCCCTCACTCGCCGCCGCGTTACGTCTCTAAGTGGCGGCGGAAGGTGCGGTCCAAGCCTCATTGTTCTCAGCCGCTACGGGAACTGTTTGTCGGTGGCTTCACTTTCAGGTTCAGCTTTAGACATATGGTGCTTCTTCCTCTGCTTTATATCTCTGGCTTGATCATGTGCGTTGGCCCTTTCTCTTCTTTCATCGGCCACCCCCCTCCCCCTGGTTGGCTCTATCGTAGCCATCAAATGTATCATCGGCTTCATCGCCATATTCAATCTGATAATTCCTCTGCCATTCAGGTTCAATCCTCTTCCTTCTTGCCTATTCTTGCTCTTTCTTTTTCTGGGTTTTTGTTGAAATGCCGGATTCGTTTGGTCAAGTGGGGCGATTTGGAGCTGTGTGCTTAA

mRNA sequence

ATGAAACCCAAAACCCTCCATTACCATGGCCATGATGCCGCCAATTGCGACGGCGCTCAGAGCAGTGGCAGTAACTCTCCGAGTCCCCCTCACTCGCCGCCGCGTTACGTCTCTAAGTGGCGGCGGAAGGTGCGGTCCAAGCCTCATTGTTCTCAGCCGCTACGGGAACTGTTTGTCGGTGGCTTCACTTTCAGGTTCAGCTTTAGACATATGGTGCTTCTTCCTCTGCTTTATATCTCTGGCTTGATCATGTGCGTTGGCCCTTTCTCTTCTTTCATCGGCCACCCCCCTCCCCCTGGTTGGCTCTATCGTAGCCATCAAATGTATCATCGGCTTCATCGCCATATTCAATCTGATAATTCCTCTGCCATTCAGGTTCAATCCTCTTCCTTCTTGCCTATTCTTGCTCTTTCTTTTTCTGGGTTTTTGTTGAAATGCCGGATTCGTTTGGTCAAGTGGGGCGATTTGGAGCTGTGTGCTTAA

Coding sequence (CDS)

ATGAAACCCAAAACCCTCCATTACCATGGCCATGATGCCGCCAATTGCGACGGCGCTCAGAGCAGTGGCAGTAACTCTCCGAGTCCCCCTCACTCGCCGCCGCGTTACGTCTCTAAGTGGCGGCGGAAGGTGCGGTCCAAGCCTCATTGTTCTCAGCCGCTACGGGAACTGTTTGTCGGTGGCTTCACTTTCAGGTTCAGCTTTAGACATATGGTGCTTCTTCCTCTGCTTTATATCTCTGGCTTGATCATGTGCGTTGGCCCTTTCTCTTCTTTCATCGGCCACCCCCCTCCCCCTGGTTGGCTCTATCGTAGCCATCAAATGTATCATCGGCTTCATCGCCATATTCAATCTGATAATTCCTCTGCCATTCAGGTTCAATCCTCTTCCTTCTTGCCTATTCTTGCTCTTTCTTTTTCTGGGTTTTTGTTGAAATGCCGGATTCGTTTGGTCAAGTGGGGCGATTTGGAGCTGTGTGCTTAA

Protein sequence

MKPKTLHYHGHDAANCDGAQSSGSNSPSPPHSPPRYVSKWRRKVRSKPHCSQPLRELFVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQSDNSSAIQVQSSSFLPILALSFSGFLLKCRIRLVKWGDLELCA

Homology

[Close]

BLAST of Lag0037532 vs. NCBI nr
Match: XP_038897123.1 (O-fucosyltransferase 10-like [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-55
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MKPKTLHYHGHDA--ANCDGAQSSGSNSPSPPHSPPRYV-SKWRRKVRSKPHCSQPLREL 60
           MKPK LHYHG+DA    CDGAQSSGS+SPSPPHSPPRY  SK RRK+RSKPH  QPLREL
Sbjct: 1   MKPKNLHYHGYDANGYQCDGAQSSGSSSPSPPHSPPRYASSKCRRKLRSKPHYYQPLREL 60

Query: 61  FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQ 120
           FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSF+G PPPPG LYRSHQMYHRLHRHIQ
Sbjct: 61  FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFVGQPPPPGSLYRSHQMYHRLHRHIQ 120

Query: 121 SDNSSAIQVQS 129
           SDNSS IQ+ S
Sbjct: 121 SDNSSGIQLSS 131

[Close]

BLAST of Lag0037532 vs. NCBI nr
Match: XP_008444126.1 (PREDICTED: uncharacterized protein At1g04910-like [Cucumis melo] >KAA0045207.1 uncharacterized protein E6C27_scaffold30G002130 [Cucumis melo var. makuwa] >TYK19236.1 uncharacterized protein E5676_scaffold1493G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 111/131 (84.73%), Postives = 116/131 (88.55%), Query Frame = 0


Query: 1   MKPKTLHYHGHDA--ANCDGAQSSGSNSPSPPHSPPRYV-SKWRRKVRSKPHCSQPLREL 60
           MKPK LHYHG+DA    CDG+QSSGS+SPSPPHSPPRY  SK RRK RSKPH  QPLREL
Sbjct: 1   MKPKNLHYHGYDANGYQCDGSQSSGSSSPSPPHSPPRYASSKCRRKPRSKPHYYQPLREL 60

Query: 61  FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQ 120
           FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSF+G PPPPG LYRSH MYHRLHRHIQ
Sbjct: 61  FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFVGQPPPPGSLYRSHLMYHRLHRHIQ 120

Query: 121 SDNSSAIQVQS 129
           SDNSSAIQ+ S
Sbjct: 121 SDNSSAIQLSS 131

[Close]

BLAST of Lag0037532 vs. NCBI nr
Match: XP_004142690.1 (O-fucosyltransferase 10 [Cucumis sativus] >KGN54587.1 hypothetical protein Csa_012487 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 108/132 (81.82%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MKPKTLHYHGHDA--ANCDGAQSSGSNSPSPPHSPPRYV-SKWRRKVRSKPHCSQPLREL 60
           MKPK LHYH +DA    CDG+QSSGS+SPSPPHSPPRY  SK RRK RSKPH  QPLREL
Sbjct: 1   MKPKNLHYHAYDANGYQCDGSQSSGSSSPSPPHSPPRYASSKCRRKPRSKPHYYQPLREL 60

Query: 61  FVGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQ 120
           FVG FTFRFSFR MVLLPLLYISGLIMCVGPFSSF+G PPPPG LYRSHQMYHRL RHIQ
Sbjct: 61  FVGAFTFRFSFRQMVLLPLLYISGLIMCVGPFSSFVGQPPPPGSLYRSHQMYHRLQRHIQ 120

Query: 121 SDNSS-AIQVQS 129
           SDNSS AIQ+ S
Sbjct: 121 SDNSSAAIQLSS 132

[Close]

BLAST of Lag0037532 vs. NCBI nr
Match: XP_022976460.1 (O-fucosyltransferase 10-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 104/128 (81.25%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MKPKTLHYHGHDAANCDGAQSSGSNSPSPPHSPPRYVSKWRRKVRSKPHCSQPLRELFVG 60
           MKPKTLHY       CDG QSSGS+SPSPPHSPPRY SK RRK+RSKPH  QPLRELFVG
Sbjct: 1   MKPKTLHY------QCDGGQSSGSSSPSPPHSPPRYASKGRRKLRSKPHYYQPLRELFVG 60

Query: 61  GFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQSDN 120
           GF FRFSFRHMVLLPLLYISGLIMCVGPFSSF G P PPG LYRSH MYH L RHIQSDN
Sbjct: 61  GFNFRFSFRHMVLLPLLYISGLIMCVGPFSSFGGQPSPPGSLYRSHHMYHLLRRHIQSDN 120

Query: 121 SSAIQVQS 129
           SSAIQ+ S
Sbjct: 121 SSAIQLAS 122

[Close]

BLAST of Lag0037532 vs. NCBI nr
Match: KAG6591909.1 (O-fucosyltransferase 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.3 bits (521), Expect = 3.9e-49
Identity = 103/128 (80.47%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MKPKTLHYHGHDAANCDGAQSSGSNSPSPPHSPPRYVSKWRRKVRSKPHCSQPLRELFVG 60
           MKPKTLHY       CDG QSSGS+SPSPPHSPPRY SK RRK+RSKPH  QP RELFVG
Sbjct: 1   MKPKTLHY------PCDGGQSSGSSSPSPPHSPPRYASKGRRKLRSKPHYYQPFRELFVG 60

Query: 61  GFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQSDN 120
           GF FRFSFRHMVLLPLLYISGLIMCVGPFSSF G P PPG LYRSH+MYH L RHIQSDN
Sbjct: 61  GFNFRFSFRHMVLLPLLYISGLIMCVGPFSSFGGQPSPPGSLYRSHRMYHLLRRHIQSDN 120

Query: 121 SSAIQVQS 129
           SSAIQ+ S
Sbjct: 121 SSAIQMAS 122

[Close]

BLAST of Lag0037532 vs. ExPASy Swiss-Prot
Match: Q8GUM0 (O-fucosyltransferase 11 OS=Arabidopsis thaliana OX=3702 GN=OFUT11 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 4   KTLHYHGHDAANCDGAQSSGSN-----SPSPPHSPPRYVSKWRRKVRSKPHCSQPLRELF 63
           K+  +H  + +N +G  SS  N     SPSPP SP R V + +R+        Q L  L 
Sbjct: 2   KSKIHHQPNGSN-NGVVSSNDNGCRSESPSPPLSPNRRVLRRQRR--------QTL--LR 61

Query: 64  VGGFTFRFSFRHMVLLPLLYISGLIMCVGPFSSFIGHPPPPGWLYRSHQMYHRLHRHIQS 123
              F+ R + R+++LLP++Y SGL+MCVGPFS  +G    PG +YRS ++Y +L   I S
Sbjct: 62  ASSFSLRRNLRYLLLLPMIYASGLLMCVGPFSGLVGWVYVPGSVYRSPEIYRKLKDDIFS 120

Query: 124 DNSSAIQVQS 129
           DNS+A+++ S
Sbjct: 122 DNSTALELSS 120

The following BLAST results are available for this feature:

BLAST of Lag0037532 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897123.1	1.7e-55	85.50	O-fucosyltransferase 10-like [Benincasa hispida]	[more]
XP_008444126.1	1.8e-54	84.73	PREDICTED: uncharacterized protein At1g04910-like [Cucumis melo] >KAA0045207.1 u...	[more]
XP_004142690.1	1.2e-50	81.82	O-fucosyltransferase 10 [Cucumis sativus] >KGN54587.1 hypothetical protein Csa_0...	[more]
XP_022976460.1	1.0e-49	81.25	O-fucosyltransferase 10-like [Cucurbita maxima]	[more]
KAG6591909.1	3.9e-49	80.47	O-fucosyltransferase 11, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0037532 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUM0	2.1e-13	40.00	O-fucosyltransferase 11 OS=Arabidopsis thaliana OX=3702 GN=OFUT11 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037532.1	Lag0037532.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006004	fucose metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity