Lag0037508 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037508
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 6854498 .. 6858682 (+)
RNA-Seq Expression	Lag0037508
Synteny	Lag0037508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGTAAATGTAATCAACCACGTCAGCGATGAATCTGTTTCCTCTAGACCTTCCATGGATTTTCATCTCGACTTCAACTCCATCCAAAATAACCAAGAAACTACTTCTTCCAATTCCTCTAATGTAAGTTTTTCATTTTCATCTATCCATTTCTGGCTTCAAAATGATCATCACATTTTTTTATTATCTGGTTTTTGACAGAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTATATATATATATATATATATATATATATATAATACCAAAATCAATACTCCATTTTGGAAATAATTAATTTCTCTCTTTTTTTTTTTTAATTAAATAGACAATGAAGAAAAAGTAACTAAATTGATTAATTTGGAGTTTAATATGATGATGATCAGGTGGGAAAGGGAATTGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGACCTCATCAAATTTATCCAAATAATTCAGGCATTGGAAACTTATCTCAACTTGGGGATTTTTCTCTGTATGTGTCAAAATCTTAATTTCTTTCTTTCTTTTTCTTGTTTAAGGGTTTTGAAATTATGTTGTTCTAATTATTCATTGCTAAAATTTTGATTTGTGTGATTATGAACTATTTTTTAGATCTCTTGATATGGGTTCCGCCAATCTACATCACATCAATGTTACTCGTCCTCCTAATTTGTTTTTTGATTTCAACTGGGTAATTAATTTTAGTTTTGTTGTAAATTTAGTTTCAATTTAGTGTTACCACTCTAAACGATGTCGTTTTTGTGGATTGTGCAGGCAGTAAGATCAACCCTAAATACAAGACGGCTGCAGGCTCACTATCACTCTCCTATGCCTTGCAGGTATTTTGATTTTATTACAACTTGGAAAAATATAGGTTTCTATTGCAATGTCATTATGTTGATTTTTGTTTTAGTTGTTGATGTGAGTGTTTTTTTTTTCAATTTAGTCTTATTATTAGTCAATTCAAATAGAGACTAGACTGAAATAATACTCAAACATCAAAAAGGTCTAGAACGTCTATTTAGTCAAATTTTTATCCATAATAAGTGATTATAAAGAACAAAATCCCTCCTTAATTTCTTCTCAAGAAAAAAAAAAAAAAAATCCCTCCTTAATTTGTCTTAGATTAAAATTTTTGTATCGAGAAGGTTAGCCACTTCAAAATTGAAATATTACATATGGTAATGGTAAATTTCTTTACTTATTCCCCTCAATCCAAGTTGAGTTATAGAAGCTTATTTTAGAATGACATTAAAATTAAAATACCTTTTTAATTAATTCCAATACTTGAATTAATCTTTTGAAACATCCTAGGCTTTATTCCACCATGCAAGGGTCGAGGAAGAATTATGAAAGCCATGACGGATCATCAAATCAAGTTAATTTCCCACGTCATATCTTAACACTTCAATTTTCTTTCACCTTCAAAGTTTTGAATTTTTATTTTTTAAATTAATTATTTAGTGTAGTGTACACTTCAACTTCATAATTAACCCATAATTAAAATAATTCAGGAGCAGCAAACATCCAAAAACTCAGAGGAACAACTAATTCCTGTCCAACCCGCAGAACCAAGATTCAATCACATGGTTCGAAAGGTCAAACATTTTCCTTTTTTTTTAGTTCAACAACAAGATATAATATCTTAATTAGTTAAACTAAATTCAAATTGTTAGAGAGCTCGAGATGGTGCTCCAAAACATTGTCTTGTTCGAAAGTCATCAGGGCCATTTACATGCATCAAATTCAAGGTACGTAATATTTATAAATTTTGTATGCTAAATTATAAAAAATACCCTTGAACTATGGGATTTGTTTCAAAAATGTCCCTAAACTGTAAAAAGTTTCAAAAATACCTCGCAGTTAATTTTTGGATAGAAACGGTTAAAACCGTTAAAAATGATTCAAAAATACCATTGTCGAAAATCTAGTCAAGTTCTTGGGATGATGTGTTGAAAGAGAAGAAAAGCTCCTAGTGTATGAATACATGAAAAAAAAGGTGAAGCTTCTTGTTAATTTTCATGGAAGAATAATTTACCGTGAGAGAAGAAAAAAAAAAAGAAACATTTTCTAATAAGGTTATTTTTTTAAAATCTTTTGAAAGTTAAAAAGAGTATTAATGAAATTGAAATTTTTAATGGTTTCCATCCAAAAATTAACGACATGGGTGTTTTTGAAACATTTTATAAAGTTCAGAGGTATTTTTGAAGCTTTTTAAAGTTCAGGAGCATTTTTGAAACAAACCCACATTTCTGAGGCATTTTTTTTTTATATGATTTAGCGAATTTTGTATTTACAGAAAAATTAAAGAGTTTGTAAAACAAAAAAAACAATAACCTTTATGGCACAAAACTTGGTAGGCTCAATCCACTCAAACTCATGGTCCGCCTTTAATTGCTCTGAAGAAGAATCTATCGGATGACAGGTTTTTCTAAAAAATAATAACTAATTCTAATTAACTTTTGGTAGCTTCAATTTTCTTATTATAATTAAAATTTCATTATGTTTTTTCAGGGTTACAAACTCAGTTTATGATCTAATGTTTGAAGAAGTTGGTTTACCAATCGATCCTCATCTTCGCCTATTTGTTCCCCTTAATTAAATTTATCTTTTCATCATGTCCTATAACTTTCATGTTTATTTTAGCAATTTAATTACCTGTATAATTATTATGTCCTATATATAATGTTTGTCGACTAATGTTCATCTATAATAAATGAGTGTACTCATATCTCGTTACTCAATTATTGAATGAATTTATAACTTGAACATAACAGGTTAAGACATTTATAAAGGTTAGAGGTTTGAACTCCACCGACCTATACTGATTTTCTTTTTTAAAAAAAAAAATCATTAAAGGTAAGCATCAATTTGTCTACCTTTGATTTTGATACATTTACCGGTCAATGAAACCACCTAGAAAGTTGATTTTCTTTCGGTATTCAAAGTTCTTTTTCAAGGGTATATATGATAATTTACCCCTAAAAGAGATACTTGAAAGGTTTGTTTGCATATTGACATGGAAGTATTTTGGAATTTGAGCGTCATAAAAATGTGTTTAAAAGGACCTTTTTATATTAGTAAAAGTATGAAGAAATTCTCAAAAAAGAAAAAAAGAGGTAAAAGTATGAAGAATAAAGTAATTATTTCTGAACCTTTTTATATATATTAATAAAAGTATATGAAGAATAAAGTAACTTGCAATTGTTCAAAAAGACCTTTTTATATTAATTTGTTGAAATATATTCAGTTTTTTTTCTCTCTCTCGTTTTCTGAGGGTGGGGTATATTTCGTTTACTTGTAAATATTTTTAAATTTTATTAATTAGCCTGAATATGATCAAAATAGGATGTGTCTCCAAAATAAGTGAGAAGTGATATGTTTTAAAATTTAGAGAATTGATGGACGTAGCTAAGCGAGTTCGTCAAACTTGGACTCTTGAAACAAATTTAATTTTAGCTTAAGTCCGACAATGGACCAAAAGAACCACTTTATAAAAGTAATTCATTCTTTTGCTCTTTTTTGAAATAAGTTGATATTTTCCCTCGCATTTGAGCTTATCATCCATCTCTCTTCCTTTGAGATTCGAGTCTCTAATCACTTGGTTGAGTGTACATGTTAATTATTGCTGATTTGTGCTCGCTTTGATGTCTTTTACCGTCTATTTGATAATATTTCATTTTTCCTGTTAATTTTCGTTTCTTTTTTTATTATTAAAAAAGAAACAAAAACATATTTGATAATTCTCTCATTGGAAAAAAAATTTATATGAAACTTGGTTTTTAAAATTAAATATATGAAACTTGTAGTTGATTTAGCTACTTTAGCTGAGGTTGTATGATCCTCTAATCCTTCAATATATGACATCGTCCTAAAGAGTTTGGCATAAATTTTTGTACTTCACTAAATCATGTTTGAAAGAACTTTTTTTTTCCTAGTTCCATCTAAATTCCTAATGGTATATTTGATGATTTTATACATTAACGGTAGATATGCCTTGAATCTGATATCTAATATGAAGCACTCCGAACAACTAGGGGCCAGGGGCGACACGCCCGATGGGGGTTCGGGGGCAACGTCCCCTAAGCTAAATTATGTATAG

mRNA sequence

ATGGAGGCTGTAAATGTAATCAACCACGTCAGCGATGAATCTGTTTCCTCTAGACCTTCCATGGATTTTCATCTCGACTTCAACTCCATCCAAAATAACCAAGAAACTACTTCTTCCAATTCCTCTAATAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTGGGAAAGGGAATTGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGACCTCATCAAATTTATCCAAATAATTCAGGCATTGGAAACTTATCTCAACTTGGGGATTTTTCTCTATCTCTTGATATGGGTTCCGCCAATCTACATCACATCAATGTTACTCGTCCTCCTAATTTGTTTTTTGATTTCAACTGGGCAGTAAGATCAACCCTAAATACAAGACGGCTGCAGGCTCACTATCACTCTCCTATGCCTTGCAGATATGCCTTGAATCTGATATCTAATATGAAGCACTCCGAACAACTAGGGGCCAGGGGCGACACGCCCGATGGGGGTTCGGGGGCAACGTCCCCTAAGCTAAATTATGTATAG

Coding sequence (CDS)

ATGGAGGCTGTAAATGTAATCAACCACGTCAGCGATGAATCTGTTTCCTCTAGACCTTCCATGGATTTTCATCTCGACTTCAACTCCATCCAAAATAACCAAGAAACTACTTCTTCCAATTCCTCTAATAATTTGCCTAAGCCAGGACCAAATCAACCCCAACAATCTCAGTCTCACCACATTTTTAATCCAGAACCATCATCAATTCCGGTGGGAAAGGGAATTGGATTTGGACCAAGAGTAGAATATGGGCCAATTCATTCAGAACAAGATAGACCTCATCAAATTTATCCAAATAATTCAGGCATTGGAAACTTATCTCAACTTGGGGATTTTTCTCTATCTCTTGATATGGGTTCCGCCAATCTACATCACATCAATGTTACTCGTCCTCCTAATTTGTTTTTTGATTTCAACTGGGCAGTAAGATCAACCCTAAATACAAGACGGCTGCAGGCTCACTATCACTCTCCTATGCCTTGCAGATATGCCTTGAATCTGATATCTAATATGAAGCACTCCGAACAACTAGGGGCCAGGGGCGACACGCCCGATGGGGGTTCGGGGGCAACGTCCCCTAAGCTAAATTATGTATAG

Protein sequence

MEAVNVINHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPSSIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPNNSGIGNLSQLGDFSLSLDMGSANLHHINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCRYALNLISNMKHSEQLGARGDTPDGGSGATSPKLNYV

Homology

[Close]

BLAST of Lag0037508 vs. NCBI nr
Match: XP_023535733.1 (uncharacterized protein LOC111797072 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-13
Identity = 66/172 (38.37%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +  +N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPSNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SLSL+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSPH 124

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCRYALNLISNMKHSEQ 177
            IN+T         NW        RR QAH HSPMP R  L   +N  H +Q
Sbjct: 125 RINITHVYQ-----NW-------VRRQQAHSHSPMPFR--LQSRTNSFHDDQ 131

[Close]

BLAST of Lag0037508 vs. NCBI nr
Match: XP_022937227.1 (uncharacterized protein LOC111443578 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-13
Identity = 64/172 (37.21%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +  +N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPSNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SLSL+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSPH 124

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCRYALNLISNMKHSEQ 177
            IN+T         NW        RR QAH H+PMP R  L   +N  H ++
Sbjct: 125 RINITHVYQ-----NW-------VRRQQAHSHNPMPFR--LQSRTNSYHDDR 131

[Close]

BLAST of Lag0037508 vs. NCBI nr
Match: KAG6591749.1 (hypothetical protein SDJN03_14095, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 61/158 (38.61%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +  +N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPSNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SLSL+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLRDLSLSLNMRSTGTSPH 119

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCR 163
            IN+T         NW        RR QAH H+PMP R
Sbjct: 125 RINITHVYQ-----NW-------VRRQQAHSHNPMPFR 119

[Close]

BLAST of Lag0037508 vs. NCBI nr
Match: XP_022975919.1 (uncharacterized protein LOC111476478 [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-11
Identity = 60/158 (37.97%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +   N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPTNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SL+L+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLTLNMRSTGTSPH 119

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCR 163
            +N+T   N++   NW        RR QAH H+PMP R
Sbjct: 125 SVNIT---NVY--QNW-------VRRQQAHSHNPMPFR 119

[Close]

BLAST of Lag0037508 vs. ExPASy TrEMBL
Match: A0A6J1FAJ6 (uncharacterized protein LOC111443578 OS=Cucurbita moschata OX=3662 GN=LOC111443578 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 64/172 (37.21%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +  +N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPSNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SLSL+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLSLNMRSTGTSPH 124

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCRYALNLISNMKHSEQ 177
            IN+T         NW        RR QAH H+PMP R  L   +N  H ++
Sbjct: 125 RINITHVYQ-----NW-------VRRQQAHSHNPMPFR--LQSRTNSYHDDR 131

[Close]

BLAST of Lag0037508 vs. ExPASy TrEMBL
Match: A0A6J1IM01 (uncharacterized protein LOC111476478 OS=Cucurbita maxima OX=3661 GN=LOC111476478 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 60/158 (37.97%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 8   NHVSDESVSSRPSMDFHLDFNSIQNNQETTSSNSSNNLPKPGPNQPQQSQSHHIFNPEPS 67
           NH +DESVSS P +DF L+F +   N +TTS+NSSN                        
Sbjct: 5   NHATDESVSSGPCVDFQLNFKNNPTNHDTTSANSSN------------------------ 64

Query: 68  SIPVGKGIGFGPRVEYGPIHSEQDRPHQIYPN-NSGIGNLSQLGDFSLSLDMGSANL--H 127
                  +G G  +  G  HS+QD  HQ Y N N G+GN S L D SL+L+M S     H
Sbjct: 65  -------VGLGLELGLGAAHSDQDSYHQAYQNSNPGLGNFSPLQDLSLTLNMRSTGTSPH 119

Query: 128 HINVTRPPNLFFDFNWAVRSTLNTRRLQAHYHSPMPCR 163
            +N+T   N++   NW        RR QAH H+PMP R
Sbjct: 125 SVNIT---NVY--QNW-------VRRQQAHSHNPMPFR 119

The following BLAST results are available for this feature:

BLAST of Lag0037508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535733.1	1.9e-13	38.37	uncharacterized protein LOC111797072 [Cucurbita pepo subsp. pepo]	[more]
XP_022937227.1	9.6e-13	37.21	uncharacterized protein LOC111443578 [Cucurbita moschata]	[more]
KAG6591749.1	1.6e-12	38.61	hypothetical protein SDJN03_14095, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022975919.1	1.1e-11	37.97	uncharacterized protein LOC111476478 [Cucurbita maxima]	[more]

BLAST of Lag0037508 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAJ6	4.6e-13	37.21	uncharacterized protein LOC111443578 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1IM01	5.1e-12	37.97	uncharacterized protein LOC111476478 OS=Cucurbita maxima OX=3661 GN=LOC111476478...	[more]

BLAST of Lag0037508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037508.1	Lag0037508.1	mRNA