Lag0037209 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037209
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA ligase
Locationchr2: 4311411 .. 4311788 (-)
RNA-Seq ExpressionLag0037209
SyntenyLag0037209
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCCTCCATCCGCTGTTTCCGCCCCGATCATAGCGATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCTCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTCGCTCGGATCGGCCGGAGTCACCGCCGGGACCATCACTCCGCCGATTTCAGATACGATCCTTCGAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGCTGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

mRNA sequence

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCCTCCATCCGCTGTTTCCGCCCCGATCATAGCGATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCTCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTCGCTCGGATCGGCCGGAGTCACCGCCGGGACCATCACTCCGCCGATTTCAGATACGATCCTTCGAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGCTGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

Coding sequence (CDS)

ATGTTGAACGACTACAATCCTTTTTCATTCACTCACAAGCTCAAATCCTCCATCCGCTGTTTCCGCCCCGATCATAGCGATTTGACCGAAAACGAAGACGATTCTCATTCTTCTCCAAGAACTCCTCGATCGCCTCTCAAATCAATGGCGGCAGAGTTCCCGGAGCTCCGCGGTATGTGCCGGAATCTCGTCGCTCGGATCGGCCGGAGTCACCGCCGGGACCATCACTCCGCCGATTTCAGATACGATCCTTCGAGCTATGCTCTTAATTTCGAGGACGAACAGGTTCGCGATGCTGATGAGTTTCCGGTTAGGGATTTTGCTTCGAGATTGCCGGCGTCGCCGCCGACTTCCCGGAGATTTTCGCCGGCGAAATGA

Protein sequence

MLNDYNPFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMCRNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRRFSPAK
Homology
BLAST of Lag0037209 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53
Identity = 111/125 (88.80%), Postives = 113/125 (90.40%), Query Frame = 0

Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DH D  ENEDD  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEDD--SSPRTPRSPLKSMAAEFPELRGMC 60

Query: 61  RNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRD DEFP+RDFASRLPASPPTSRR
Sbjct: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR 120

Query: 121 FSPAK 126
            SPAK
Sbjct: 121 LSPAK 123

BLAST of Lag0037209 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 7.8e-53
Identity = 109/125 (87.20%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLN+Y+PFSFT KLKSSIRCFR DHSD  E+EDD  SSPRTPRSPLKSMAAEFPE+RGMC
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDD--SSPRTPRSPLKSMAAEFPEIRGMC 61

Query: 61  RNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRR 120
           RNLVARIGR  RR HHSADFRYDPSSYALNFEDEQVRD DEFP+RDFASRLPASPPTSRR
Sbjct: 62  RNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

BLAST of Lag0037209 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-52
Identity = 109/125 (87.20%), Postives = 111/125 (88.80%), Query Frame = 0

Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DH D  ENE D  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD--SSPRTPRSPLKSMAAEFPELRGMC 60

Query: 61  RNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRD DEFP+RDFASRLPASPPTS R
Sbjct: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 120

Query: 121 FSPAK 126
            SPAK
Sbjct: 121 LSPAK 123

BLAST of Lag0037209 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-52
Identity = 109/125 (87.20%), Postives = 111/125 (88.80%), Query Frame = 0

Query: 1   MLNDYNPFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 60
           MLNDY+PFSFT KLKSSI CFR DH D  ENE D  SSPRTPRSPLKSMAAEFPELRGMC
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD--SSPRTPRSPLKSMAAEFPELRGMC 61

Query: 61  RNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRR 120
           RNLVARIGRS RR HHSADFRYDPSSYALNFEDEQVRD DEFP+RDFASRLPASPPTS R
Sbjct: 62  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 121

Query: 121 FSPAK 126
            SPAK
Sbjct: 122 LSPAK 124

BLAST of Lag0037209 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-41
Identity = 93/125 (74.40%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 3   NDYN--PFSFTHKLKSSIRCFRPDHSDLTENEDDSHSSPRTPRSPLKSMAAEFPELRGMC 62
           N+YN  PFSFTHKLKSSI CFR DH DL ++ED+  +S R+PRSPLKS A+E  ELRGMC
Sbjct: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDE--ASLRSPRSPLKSTASEHTELRGMC 63

Query: 63  RNLVARIGRSHRRDHHSADFRYDPSSYALNFEDEQVRDADEFPVRDFASRLPASPPTSRR 122
           RNLVARIGRS RR HHSADFRYDPSSYALNFEDE  R  D+FP+RDFASRLPASP +S  
Sbjct: 64  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASPHSSPI 123

Query: 123 FSPAK 126
           F PAK
Sbjct: 124 FQPAK 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023523424.11.6e-5388.80uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo][more]
XP_022981208.17.8e-5387.20uncharacterized protein LOC111480417 [Cucurbita maxima][more]
KAG7031776.16.6e-5287.20hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940408.16.6e-5287.20uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet... [more]
XP_022138148.16.9e-4174.40uncharacterized protein LOC111009386 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..48
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 11..119
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 11..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037209.1Lag0037209.1mRNA