Lag0037203 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037203
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 4269254 .. 4270160 (+)
RNA-Seq Expression	Lag0037203
Synteny	Lag0037203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTCAAGGACGACTGGCTTACGGCCGCCATGGCCGACGACGGAGTGGTGGTCGAGTTGTTGGTGCGCTTGAAGCAGTCGCAGGCTGCCTCGCCTTCCAAATCTCCTCTTCCGGTGACGGTGCCCTTCACTTGGGGGATTAGGCAGCCGAGGTCCAGGACGGCCACCGCGGCGTCGGCCGTTGTTGGTAGATGCGCTGATGGTGTCTTGTTCAGGAATAATAAGGATGTTGACTCTACCAGATGTAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGGGGTTCTCCGTCTGCTACGCTTGACGGTTATGAGGAGTCTAGCCGTCCCGCTTCTCTCTCGCACGCTGCTGCTTCCAGATTTAAGGTTCTTGACTCTTTCTGCCTTTTCTTACGATTCTGTGTCTTCTGTTTTGGATTTTTGTAGTTTCGTCTCGTATCTCGACTGTGTCTGCTCTGGCTTTCCGATCTTTGCGGTTTTTGTTCGTTTTTTTTTTTCGCCACGAGTTCTTAAATCTTAACGCCGGCGTTCTTAATTCCGTTTTTTACTCGGCGGTGGTGTCGGCTGCGGAGTTCTGTCGGTCGGTGGCGACGTGGATTCTCGGATGAGACATTCTTATCTCGGAGAAGCCTCGTATATTGAATCGTCATCGTTTCGCCATTTGTTTTTCCAAGAATCTGATTCCGTATCGCGAAATCTCTCCTGATTTCCTCCTCATTTTCTTCTACAGCTTAGCGAAACAAAATTCCTCTCTCAGAGCTCACACAACTGCAAATCTCTCAATTCCGTAACCGCTCTGTATTTATCCAAACAGTTTCGTGTTCGCTCCATCAATGGCGGACAATCCTCACGAATCACCGTCGAGAAACTGCTCTCTAATTCGACTGAATCCCCGATGTACCCCTAG

mRNA sequence

ATGATGGTCAAGGACGACTGGCTTACGGCCGCCATGGCCGACGACGGAGTGGTGGTCGAGTTGTTGGTGCGCTTGAAGCAGTCGCAGGCTGCCTCGCCTTCCAAATCTCCTCTTCCGGTGACGGTGCCCTTCACTTGGGGGATTAGGCAGCCGAGGTCCAGGACGGCCACCGCGGCGTCGGCCGTTGTTGGTAGATGCGCTGATGGTGTCTTGTTCAGGAATAATAAGGATGTTGACTCTACCAGATGTAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGGGGTTCTCCGTCTGCTACGCTTGACGGTTATGAGGAGTCTAGCCGTCCCGCTTCTCTCTCGCACGCTGCTGCTTCCAGATTTAAGCTTAGCGAAACAAAATTCCTCTCTCAGAGCTCACACAACTGCAAATCTCTCAATTCCGTAACCGCTCTGTATTTATCCAAACAGTTTCGTGTTCGCTCCATCAATGGCGGACAATCCTCACGAATCACCGTCGAGAAACTGCTCTCTAATTCGACTGAATCCCCGATGTACCCCTAG

Coding sequence (CDS)

ATGATGGTCAAGGACGACTGGCTTACGGCCGCCATGGCCGACGACGGAGTGGTGGTCGAGTTGTTGGTGCGCTTGAAGCAGTCGCAGGCTGCCTCGCCTTCCAAATCTCCTCTTCCGGTGACGGTGCCCTTCACTTGGGGGATTAGGCAGCCGAGGTCCAGGACGGCCACCGCGGCGTCGGCCGTTGTTGGTAGATGCGCTGATGGTGTCTTGTTCAGGAATAATAAGGATGTTGACTCTACCAGATGTAGTCCTACGACGCCGCTTTCCTGGAGCGGCGGGGGTTCTCCGTCTGCTACGCTTGACGGTTATGAGGAGTCTAGCCGTCCCGCTTCTCTCTCGCACGCTGCTGCTTCCAGATTTAAGCTTAGCGAAACAAAATTCCTCTCTCAGAGCTCACACAACTGCAAATCTCTCAATTCCGTAACCGCTCTGTATTTATCCAAACAGTTTCGTGTTCGCTCCATCAATGGCGGACAATCCTCACGAATCACCGTCGAGAAACTGCTCTCTAATTCGACTGAATCCCCGATGTACCCCTAG

Protein sequence

MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAASAVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASRFKLSETKFLSQSSHNCKSLNSVTALYLSKQFRVRSINGGQSSRITVEKLLSNSTESPMYP

Homology

[Close]

BLAST of Lag0037203 vs. NCBI nr
Match: XP_023523262.1 (uncharacterized protein LOC111787510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-49
Identity = 109/122 (89.34%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAAS 60
           MMV DDWLTAAMADDGVVVELLVRLKQSQA SPSKSPLPVTVPFTWGIRQ RSRTAT   
Sbjct: 1   MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTAT--- 60

Query: 61  AVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASR 120
             VGRC DGVL RNNKDVDSTR SPTTPLSWSGGGSPSATLDGYEESSRPA+LSH AASR
Sbjct: 61  -TVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSH-AASR 117

Query: 121 FK 123
           FK
Sbjct: 121 FK 117

[Close]

BLAST of Lag0037203 vs. NCBI nr
Match: KAG7031773.1 (hypothetical protein SDJN02_05814 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-49
Identity = 109/122 (89.34%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAAS 60
           MMV DDWLTAAMADDGVVVELLVRLKQSQA SPSKSPLPVTVPFTWGIRQ RSRTAT   
Sbjct: 1   MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTAT--- 60

Query: 61  AVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASR 120
             VGRC DGVL RNNKDVDSTR SPTTPLSWSGGGSPSATLDGYEESSRPA+LSH AASR
Sbjct: 61  -TVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSH-AASR 117

Query: 121 FK 123
           FK
Sbjct: 121 FK 117

[Close]

BLAST of Lag0037203 vs. NCBI nr
Match: KAG6608135.1 (hypothetical protein SDJN03_01477, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-49
Identity = 109/122 (89.34%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAAS 60
           MMV DDWLTAAMADDGVVVELLVRLKQSQA SPSKSPLPVTVPFTWGIRQ RSRTAT   
Sbjct: 1   MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTAT--- 60

Query: 61  AVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASR 120
             VGRC DGVL RNNKDVDSTR SPTTPLSWSGGGSPSATLDGYEESSRPA+LSH AASR
Sbjct: 61  -TVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSH-AASR 117

Query: 121 FK 123
           FK
Sbjct: 121 FK 117

[Close]

BLAST of Lag0037203 vs. NCBI nr
Match: XP_022981041.1 (uncharacterized protein LOC111480308 isoform X1 [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-48
Identity = 108/123 (87.80%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAAS 60
           MMV DDWLTAAMADDGVVVELLVRLKQSQA SPSKSPLPVTVPFTWGIRQ RSRTAT   
Sbjct: 1   MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTAT--- 60

Query: 61  AVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASR 120
             VGRC DGVL RNNKDVDSTR SPTTPLSWSGGGSPSATLDGYEESSRPA+LSH A SR
Sbjct: 61  -TVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSH-AVSR 118

Query: 121 FKL 124
           FK+
Sbjct: 121 FKV 118

[Close]

BLAST of Lag0037203 vs. NCBI nr
Match: XP_022981042.1 (uncharacterized protein LOC111480308 isoform X2 [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 108/122 (88.52%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MMVKDDWLTAAMADDGVVVELLVRLKQSQAASPSKSPLPVTVPFTWGIRQPRSRTATAAS 60
           MMV DDWLTAAMADDGVVVELLVRLKQSQA SPSKSPLPVTVPFTWGIRQ RSRTAT   
Sbjct: 1   MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTAT--- 60

Query: 61  AVVGRCADGVLFRNNKDVDSTRCSPTTPLSWSGGGSPSATLDGYEESSRPASLSHAAASR 120
             VGRC DGVL RNNKDVDSTR SPTTPLSWSGGGSPSATLDGYEESSRPA+LSH A SR
Sbjct: 61  -TVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSH-AVSR 117

Query: 121 FK 123
           FK
Sbjct: 121 FK 117

The following BLAST results are available for this feature:

BLAST of Lag0037203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523262.1	7.6e-49	89.34	uncharacterized protein LOC111787510 [Cucurbita pepo subsp. pepo]	[more]
KAG7031773.1	7.6e-49	89.34	hypothetical protein SDJN02_05814 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608135.1	7.6e-49	89.34	hypothetical protein SDJN03_01477, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022981041.1	1.3e-48	87.80	uncharacterized protein LOC111480308 isoform X1 [Cucurbita maxima]	[more]
XP_022981042.1	2.2e-48	88.52	uncharacterized protein LOC111480308 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0037203 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	PANTHER	PTHR35099	OS02G0182700 PROTEIN	coord: 2..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037203.1	Lag0037203.1	mRNA