Lag0037163 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037163
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionVQ motif-containing protein 4-like
Locationchr2: 3929161 .. 3929721 (+)
RNA-Seq ExpressionLag0037163
SyntenyLag0037163
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA

mRNA sequence

ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA

Coding sequence (CDS)

ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA

Protein sequence

MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSHRFDSPVPSPVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSPSEQSQNA
Homology
BLAST of Lag0037163 vs. NCBI nr
Match: XP_022138667.1 (VQ motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 159/195 (81.54%), Postives = 169/195 (86.67%), Query Frame = 0

Query: 1   MEKHLITISSPPPPPPPS--SSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS 60
           ME+H+  ++ PPPP PP   +SPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS
Sbjct: 1   MEQHVNPMTLPPPPSPPPWLTSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS 60

Query: 61  SSKPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH-------RFDS 120
            SKP PPAADHLTGPRRSPFKLQERRHT+RKLEIKLGLT  F+NSPPSH       RFDS
Sbjct: 61  CSKPSPPAADHLTGPRRSPFKLQERRHTMRKLEIKLGLTTNFRNSPPSHYSPSQIRRFDS 120

Query: 121 PVPSPVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELL 180
           PVPSPVTPL  ESL F RP VASPLSPPVT EDKAIAD GFYLHPSP++TPR+ QPPELL
Sbjct: 121 PVPSPVTPLATESLLFLRPGVASPLSPPVTAEDKAIADGGFYLHPSPVSTPRNFQPPELL 180

Query: 181 NLFPSNSPSEQSQNA 187
           NLFPSNSPSEQSQNA
Sbjct: 181 NLFPSNSPSEQSQNA 195

BLAST of Lag0037163 vs. NCBI nr
Match: XP_022977123.1 (VQ motif-containing protein 11-like [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 148/178 (83.15%), Postives = 154/178 (86.52%), Query Frame = 0

Query: 1   MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
           MEKHL T+SSPPPPP PS+SPTTFVQAD NSFRDLVQKLTGFSG SEKLPVTHLSKLSSS
Sbjct: 1   MEKHLTTVSSPPPPPLPSTSPTTFVQADPNSFRDLVQKLTGFSGHSEKLPVTHLSKLSSS 60

Query: 61  KPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPVT 120
            P PPA DH TGPRRSPFKLQERRHT+RKLEIKLG TG FKNS PSH  RFDSP+PSPVT
Sbjct: 61  NPLPPATDHHTGPRRSPFKLQERRHTIRKLEIKLGPTGIFKNS-PSHPRRFDSPIPSPVT 120

Query: 121 PLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPS 177
           PL  E LF R+P VASPL+PPVT EDKAIAD GFYLHPS    PRSSQPPELLNLFPS
Sbjct: 121 PLAVEFLFLRKPGVASPLTPPVTAEDKAIADGGFYLHPS----PRSSQPPELLNLFPS 173

BLAST of Lag0037163 vs. NCBI nr
Match: XP_008452821.1 (PREDICTED: VQ motif-containing protein 31-like [Cucumis melo] >KAA0064567.1 VQ motif-containing protein 31-like [Cucumis melo var. makuwa] >TYK20023.1 VQ motif-containing protein 31-like [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 151/179 (84.36%), Postives = 156/179 (87.15%), Query Frame = 0

Query: 1   MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
           MEKH I  SS    PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1   MEKHFIAASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60

Query: 61  KPFPP-AADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
           KPFPP AAD+ TGPRRSPFKLQERRHT+RKLEIKL LTGPFKNS PSH  R DSPVPSPV
Sbjct: 61  KPFPPLAADYHTGPRRSPFKLQERRHTIRKLEIKLSLTGPFKNSSPSHTRRVDSPVPSPV 120

Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPS 177
           TPL AESLFFRRP VASPL+PPVT EDKAIAD  FYLHPS    PRSSQPPELLNLFPS
Sbjct: 121 TPLAAESLFFRRPSVASPLTPPVTAEDKAIADGEFYLHPS----PRSSQPPELLNLFPS 171

BLAST of Lag0037163 vs. NCBI nr
Match: KAE8649934.1 (hypothetical protein Csa_012580 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 8.6e-72
Identity = 150/188 (79.79%), Postives = 161/188 (85.64%), Query Frame = 0

Query: 1   MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
           ME+H+IT SS    PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1   MERHVITASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60

Query: 61  KPF-PPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
           KPF PPAAD+ TGPRRSPFKLQERRHT+RKLEI+L LT PFKNS PSH  R DSPVP PV
Sbjct: 61  KPFPPPAADYHTGPRRSPFKLQERRHTIRKLEIQLALTRPFKNSSPSHTRRVDSPVPGPV 120

Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSN 180
           TPL AESLFFRRP V SPLSPPVT EDKAIAD GFYLHPS    PRSSQPPELLNLFPS 
Sbjct: 121 TPLAAESLFFRRPSVTSPLSPPVTAEDKAIADSGFYLHPS----PRSSQPPELLNLFPSK 180

Query: 181 SPSEQSQN 186
            P+ ++ +
Sbjct: 181 FPNAKTNS 180

BLAST of Lag0037163 vs. NCBI nr
Match: XP_004145579.1 (VQ motif-containing protein 11 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 8.6e-72
Identity = 150/182 (82.42%), Postives = 157/182 (86.26%), Query Frame = 0

Query: 1   MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
           ME+H+IT SS    PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1   MERHVITASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60

Query: 61  KPF-PPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
           KPF PPAAD+ TGPRRSPFKLQERRHT+RKLEI+L LT PFKNS PSH  R DSPVP PV
Sbjct: 61  KPFPPPAADYHTGPRRSPFKLQERRHTIRKLEIQLALTRPFKNSSPSHTRRVDSPVPGPV 120

Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSN 180
           TPL AESLFFRRP V SPLSPPVT EDKAIAD GFYLHPS    PRSSQPPELLNLFPS 
Sbjct: 121 TPLAAESLFFRRPSVTSPLSPPVTAEDKAIADSGFYLHPS----PRSSQPPELLNLFPSK 174

BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match: Q9FHZ3 (VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-15
Identity = 81/207 (39.13%), Postives = 103/207 (49.76%), Query Frame = 0

Query: 21  PTTFVQADTNSFRDLVQKLTGFSGDS-------EKLPVTHLSKLSSSKPFPPAADHLTGP 80
           PTTFVQADT++F+ +VQ LTG S D+          PV + +K  SS   PP        
Sbjct: 48  PTTFVQADTSTFKQVVQMLTGSSTDTTTGKHHEAPSPVNNNNK-GSSFSIPPI------K 107

Query: 81  RRSPFKLQERR--------------HTLR-KLEIKLGLTGPFKNSPPSHRF--------- 140
           + + FKL ERR              +TLR +   +L  TG   +   S RF         
Sbjct: 108 KTNSFKLYERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSPRNSSSSE 167

Query: 141 ---------DSP---VPSPVTPLTAESLFFRRPVVASPLS-PPVTVEDKAIADRGFYLHP 184
                    D P   + SPVTPL +    F +   +SPLS    + EDKAIAD+GFYLHP
Sbjct: 168 NILLSPSMLDFPKLGLNSPVTPLRSNDDPFNK---SSPLSLGNSSEEDKAIADKGFYLHP 227

BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match: Q5M750 (VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 69/184 (37.50%), Postives = 88/184 (47.83%), Query Frame = 0

Query: 21  PTTFVQADTNSFRDLVQKLTGFS-----GDSEKLPVTHLSKLSSSKP----FPPAA---- 80
           PTTFVQADT+SF+ +VQ LTG +     G S K   TH      S P     PP      
Sbjct: 56  PTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPN 115

Query: 81  DHLTGPRRSPFKLQERRHTLRKLEIK------------LGLTGPFKNSPPSHRFDSPVPS 140
              +    S F+L ERR++++ L+I                  P   SP    F S V S
Sbjct: 116 KKQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLS 175

Query: 141 PVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFP 180
           PVTPL  +   F R   ++     +  E+KA+ +RGFYLHPSP  TP   + P LL LFP
Sbjct: 176 PVTPLIPDP--FDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE-PRLLPLFP 235

BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match: Q9LDZ1 (VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 68/186 (36.56%), Postives = 89/186 (47.85%), Query Frame = 0

Query: 21  PTTFVQADTNSFRDLVQKLTGFSG----DSEKLPVTHLSKLSSSKPFPPAADHLTGPRRS 80
           PTTFVQAD++SF+ +VQ LTG S     DS + P T   K   +   PP        + S
Sbjct: 36  PTTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGK--GNFVIPPIKT-AQPKKHS 95

Query: 81  PFKLQERRH------------TLRKLEIKLGLTGPFKNSPPSHRFDSP---------VPS 140
             KL ERR              +  L I  G  G  + SP +    SP         + S
Sbjct: 96  GNKLYERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCLDFPKLALNS 155

Query: 141 PVTPLTAESLFFRRPVVASPLS--PPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNL 180
           PVTPL   +          P     P++ E++ IAD+G+YLH SPI+TPR S+ P+LL L
Sbjct: 156 PVTPLKQGT----NGNEGDPFDKMSPLSEEERGIADKGYYLHRSPISTPRDSE-PQLLPL 213

BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match: Q9FNP0 (VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 0

Query: 22  TTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAADHLTGPRRSPFKLQ 81
           TTFVQ DTN+FR++VQ+LTG + ++        + + ++             +R   KL 
Sbjct: 17  TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAI-----------QKRPTSKLH 76

Query: 82  ERRHTLR-KLEI-------KLGLTGPFKNSPPSHRFDSPVPSPVTPLTAESLFFRRPVVA 141
           ERR  +R KLEI       K   T P   S  ++   SPV +P +  +  SL    P   
Sbjct: 77  ERRQCMRPKLEIVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSLFSNLSLIEGEP--- 136

Query: 142 SPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSPSEQSQ 185
              +  +  E+KAI +R FYLHPSP + P  ++ PELL LFP  SP+   +
Sbjct: 137 DSCTTNIEEEEKAIKERRFYLHPSPRSKPGYTE-PELLTLFPLTSPNSSGK 172

BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match: Q9M8L3 (VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 66/181 (36.46%), Postives = 88/181 (48.62%), Query Frame = 0

Query: 8   ISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAA 67
           +S   PP   +   T FVQAD ++FR++VQKLTG   D      + +S      P     
Sbjct: 1   MSHQQPPSYATEPNTMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVSAAHQKLPLT--- 60

Query: 68  DHLTGPRRSPFKLQERRHTLRKLEIKL-GLTGPFKNSPPSHRFDSPVPSPVTPLTAESLF 127
                P++  FKL ERR + +K+E+K+  +T P  N   SH     + SPV+ L     F
Sbjct: 61  -----PKKPAFKLHERRQSSKKMELKVNNITNP--NDAFSHFHRGFLVSPVSHLDP---F 120

Query: 128 FRRPVVASPLS-------PPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSP 181
           + R    SP S        P   E KAIA++GFY  PSP     S   PELL LFP  SP
Sbjct: 121 WAR---VSPHSAREEHHAQPDKEEQKAIAEKGFYFLPSP--RSGSEPAPELLPLFPLRSP 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138667.13.2e-7981.54VQ motif-containing protein 4-like [Momordica charantia][more]
XP_022977123.13.8e-7283.15VQ motif-containing protein 11-like [Cucurbita maxima][more]
XP_008452821.13.8e-7284.36PREDICTED: VQ motif-containing protein 31-like [Cucumis melo] >KAA0064567.1 VQ m... [more]
KAE8649934.18.6e-7279.79hypothetical protein Csa_012580 [Cucumis sativus][more]
XP_004145579.18.6e-7282.42VQ motif-containing protein 11 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9FHZ34.5e-1539.13VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1[more]
Q5M7502.2e-1437.50VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1[more]
Q9LDZ17.9e-1236.56VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1[more]
Q9FNP07.9e-1234.50VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1[more]
Q9M8L31.8e-1136.46VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 20..44
e-value: 9.5E-11
score: 41.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..115
NoneNo IPR availablePANTHERPTHR33402:SF3VQ MOTIF-CONTAINING PROTEIN 11-LIKEcoord: 15..182
IPR039611VQ motif-containing protein 4/11/13/19/31/33PANTHERPTHR33402VQ MOTIF-CONTAINING PROTEIN 11-LIKEcoord: 15..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037163.1Lag0037163.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus