Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA
mRNA sequence
ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA
Coding sequence (CDS)
ATGGAAAAACATCTAATCACCATCTCTTCGCCGCCGCCTCCGCCGCCGCCGTCATCTTCTCCGACCACCTTCGTCCAAGCCGACACCAACTCCTTCAGAGACCTCGTCCAGAAGCTCACCGGCTTTTCCGGTGACTCCGAAAAACTTCCAGTCACGCACCTCTCCAAGCTTTCCTCCTCCAAGCCCTTCCCTCCCGCCGCCGACCACCTCACCGGTCCCCGCCGGTCTCCCTTCAAGCTCCAAGAGCGCCGTCACACCCTCCGAAAGCTTGAGATCAAACTCGGCCTCACCGGACCTTTCAAGAACTCGCCGCCGAGTCACCGGTTCGACTCGCCCGTTCCGAGTCCGGTCACGCCTCTCACCGCCGAGTCGCTGTTTTTTCGGAGGCCTGTCGTGGCCTCGCCGCTGTCGCCTCCGGTCACGGTGGAGGACAAGGCCATAGCCGACCGCGGGTTTTATCTTCACCCGTCGCCGATTAATACTCCGAGGAGTTCGCAGCCGCCGGAGCTCTTGAATTTGTTCCCTTCCAATTCGCCAAGCGAGCAATCTCAAAATGCATAA
Protein sequence
MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSHRFDSPVPSPVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSPSEQSQNA
Homology
BLAST of Lag0037163 vs. NCBI nr
Match:
XP_022138667.1 (VQ motif-containing protein 4-like [Momordica charantia])
HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 159/195 (81.54%), Postives = 169/195 (86.67%), Query Frame = 0
Query: 1 MEKHLITISSPPPPPPPS--SSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS 60
ME+H+ ++ PPPP PP +SPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS
Sbjct: 1 MEQHVNPMTLPPPPSPPPWLTSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLS 60
Query: 61 SSKPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH-------RFDS 120
SKP PPAADHLTGPRRSPFKLQERRHT+RKLEIKLGLT F+NSPPSH RFDS
Sbjct: 61 CSKPSPPAADHLTGPRRSPFKLQERRHTMRKLEIKLGLTTNFRNSPPSHYSPSQIRRFDS 120
Query: 121 PVPSPVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELL 180
PVPSPVTPL ESL F RP VASPLSPPVT EDKAIAD GFYLHPSP++TPR+ QPPELL
Sbjct: 121 PVPSPVTPLATESLLFLRPGVASPLSPPVTAEDKAIADGGFYLHPSPVSTPRNFQPPELL 180
Query: 181 NLFPSNSPSEQSQNA 187
NLFPSNSPSEQSQNA
Sbjct: 181 NLFPSNSPSEQSQNA 195
BLAST of Lag0037163 vs. NCBI nr
Match:
XP_022977123.1 (VQ motif-containing protein 11-like [Cucurbita maxima])
HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 148/178 (83.15%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 1 MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
MEKHL T+SSPPPPP PS+SPTTFVQAD NSFRDLVQKLTGFSG SEKLPVTHLSKLSSS
Sbjct: 1 MEKHLTTVSSPPPPPLPSTSPTTFVQADPNSFRDLVQKLTGFSGHSEKLPVTHLSKLSSS 60
Query: 61 KPFPPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPVT 120
P PPA DH TGPRRSPFKLQERRHT+RKLEIKLG TG FKNS PSH RFDSP+PSPVT
Sbjct: 61 NPLPPATDHHTGPRRSPFKLQERRHTIRKLEIKLGPTGIFKNS-PSHPRRFDSPIPSPVT 120
Query: 121 PLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPS 177
PL E LF R+P VASPL+PPVT EDKAIAD GFYLHPS PRSSQPPELLNLFPS
Sbjct: 121 PLAVEFLFLRKPGVASPLTPPVTAEDKAIADGGFYLHPS----PRSSQPPELLNLFPS 173
BLAST of Lag0037163 vs. NCBI nr
Match:
XP_008452821.1 (PREDICTED: VQ motif-containing protein 31-like [Cucumis melo] >KAA0064567.1 VQ motif-containing protein 31-like [Cucumis melo var. makuwa] >TYK20023.1 VQ motif-containing protein 31-like [Cucumis melo var. makuwa])
HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 151/179 (84.36%), Postives = 156/179 (87.15%), Query Frame = 0
Query: 1 MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
MEKH I SS PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1 MEKHFIAASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60
Query: 61 KPFPP-AADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
KPFPP AAD+ TGPRRSPFKLQERRHT+RKLEIKL LTGPFKNS PSH R DSPVPSPV
Sbjct: 61 KPFPPLAADYHTGPRRSPFKLQERRHTIRKLEIKLSLTGPFKNSSPSHTRRVDSPVPSPV 120
Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPS 177
TPL AESLFFRRP VASPL+PPVT EDKAIAD FYLHPS PRSSQPPELLNLFPS
Sbjct: 121 TPLAAESLFFRRPSVASPLTPPVTAEDKAIADGEFYLHPS----PRSSQPPELLNLFPS 171
BLAST of Lag0037163 vs. NCBI nr
Match:
KAE8649934.1 (hypothetical protein Csa_012580 [Cucumis sativus])
HSP 1 Score: 280.8 bits (717), Expect = 8.6e-72
Identity = 150/188 (79.79%), Postives = 161/188 (85.64%), Query Frame = 0
Query: 1 MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
ME+H+IT SS PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1 MERHVITASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60
Query: 61 KPF-PPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
KPF PPAAD+ TGPRRSPFKLQERRHT+RKLEI+L LT PFKNS PSH R DSPVP PV
Sbjct: 61 KPFPPPAADYHTGPRRSPFKLQERRHTIRKLEIQLALTRPFKNSSPSHTRRVDSPVPGPV 120
Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSN 180
TPL AESLFFRRP V SPLSPPVT EDKAIAD GFYLHPS PRSSQPPELLNLFPS
Sbjct: 121 TPLAAESLFFRRPSVTSPLSPPVTAEDKAIADSGFYLHPS----PRSSQPPELLNLFPSK 180
Query: 181 SPSEQSQN 186
P+ ++ +
Sbjct: 181 FPNAKTNS 180
BLAST of Lag0037163 vs. NCBI nr
Match:
XP_004145579.1 (VQ motif-containing protein 11 [Cucumis sativus])
HSP 1 Score: 280.8 bits (717), Expect = 8.6e-72
Identity = 150/182 (82.42%), Postives = 157/182 (86.26%), Query Frame = 0
Query: 1 MEKHLITISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSS 60
ME+H+IT SS PPPS+SPTTFVQADTNSFRDLVQKLTGF+GDSEKLPVTHLSKLSSS
Sbjct: 1 MERHVITASS----PPPSTSPTTFVQADTNSFRDLVQKLTGFAGDSEKLPVTHLSKLSSS 60
Query: 61 KPF-PPAADHLTGPRRSPFKLQERRHTLRKLEIKLGLTGPFKNSPPSH--RFDSPVPSPV 120
KPF PPAAD+ TGPRRSPFKLQERRHT+RKLEI+L LT PFKNS PSH R DSPVP PV
Sbjct: 61 KPFPPPAADYHTGPRRSPFKLQERRHTIRKLEIQLALTRPFKNSSPSHTRRVDSPVPGPV 120
Query: 121 TPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSN 180
TPL AESLFFRRP V SPLSPPVT EDKAIAD GFYLHPS PRSSQPPELLNLFPS
Sbjct: 121 TPLAAESLFFRRPSVTSPLSPPVTAEDKAIADSGFYLHPS----PRSSQPPELLNLFPSK 174
BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match:
Q9FHZ3 (VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 4.5e-15
Identity = 81/207 (39.13%), Postives = 103/207 (49.76%), Query Frame = 0
Query: 21 PTTFVQADTNSFRDLVQKLTGFSGDS-------EKLPVTHLSKLSSSKPFPPAADHLTGP 80
PTTFVQADT++F+ +VQ LTG S D+ PV + +K SS PP
Sbjct: 48 PTTFVQADTSTFKQVVQMLTGSSTDTTTGKHHEAPSPVNNNNK-GSSFSIPPI------K 107
Query: 81 RRSPFKLQERR--------------HTLR-KLEIKLGLTGPFKNSPPSHRF--------- 140
+ + FKL ERR +TLR + +L TG + S RF
Sbjct: 108 KTNSFKLYERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSPRNSSSSE 167
Query: 141 ---------DSP---VPSPVTPLTAESLFFRRPVVASPLS-PPVTVEDKAIADRGFYLHP 184
D P + SPVTPL + F + +SPLS + EDKAIAD+GFYLHP
Sbjct: 168 NILLSPSMLDFPKLGLNSPVTPLRSNDDPFNK---SSPLSLGNSSEEDKAIADKGFYLHP 227
BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match:
Q5M750 (VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 69/184 (37.50%), Postives = 88/184 (47.83%), Query Frame = 0
Query: 21 PTTFVQADTNSFRDLVQKLTGFS-----GDSEKLPVTHLSKLSSSKP----FPPAA---- 80
PTTFVQADT+SF+ +VQ LTG + G S K TH S P PP
Sbjct: 56 PTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTHHQPDPRSTPSSFSIPPIKAVPN 115
Query: 81 DHLTGPRRSPFKLQERRHTLRKLEIK------------LGLTGPFKNSPPSHRFDSPVPS 140
+ S F+L ERR++++ L+I P SP F S V S
Sbjct: 116 KKQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLS 175
Query: 141 PVTPLTAESLFFRRPVVASPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFP 180
PVTPL + F R ++ + E+KA+ +RGFYLHPSP TP + P LL LFP
Sbjct: 176 PVTPLIPDP--FDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE-PRLLPLFP 235
BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match:
Q9LDZ1 (VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 68/186 (36.56%), Postives = 89/186 (47.85%), Query Frame = 0
Query: 21 PTTFVQADTNSFRDLVQKLTGFSG----DSEKLPVTHLSKLSSSKPFPPAADHLTGPRRS 80
PTTFVQAD++SF+ +VQ LTG S DS + P T K + PP + S
Sbjct: 36 PTTFVQADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSGK--GNFVIPPIKT-AQPKKHS 95
Query: 81 PFKLQERRH------------TLRKLEIKLGLTGPFKNSPPSHRFDSP---------VPS 140
KL ERR + L I G G + SP + SP + S
Sbjct: 96 GNKLYERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSCLDFPKLALNS 155
Query: 141 PVTPLTAESLFFRRPVVASPLS--PPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNL 180
PVTPL + P P++ E++ IAD+G+YLH SPI+TPR S+ P+LL L
Sbjct: 156 PVTPLKQGT----NGNEGDPFDKMSPLSEEERGIADKGYYLHRSPISTPRDSE-PQLLPL 213
BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match:
Q9FNP0 (VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 0
Query: 22 TTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAADHLTGPRRSPFKLQ 81
TTFVQ DTN+FR++VQ+LTG + ++ + + ++ +R KL
Sbjct: 17 TTFVQTDTNTFREIVQRLTGPTENNAAAATPEATVIKTAI-----------QKRPTSKLH 76
Query: 82 ERRHTLR-KLEI-------KLGLTGPFKNSPPSHRFDSPVPSPVTPLTAESLFFRRPVVA 141
ERR +R KLEI K T P S ++ SPV +P + + SL P
Sbjct: 77 ERRQCMRPKLEIVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSLFSNLSLIEGEP--- 136
Query: 142 SPLSPPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSPSEQSQ 185
+ + E+KAI +R FYLHPSP + P ++ PELL LFP SP+ +
Sbjct: 137 DSCTTNIEEEEKAIKERRFYLHPSPRSKPGYTE-PELLTLFPLTSPNSSGK 172
BLAST of Lag0037163 vs. ExPASy Swiss-Prot
Match:
Q9M8L3 (VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 66/181 (36.46%), Postives = 88/181 (48.62%), Query Frame = 0
Query: 8 ISSPPPPPPPSSSPTTFVQADTNSFRDLVQKLTGFSGDSEKLPVTHLSKLSSSKPFPPAA 67
+S PP + T FVQAD ++FR++VQKLTG D + +S P
Sbjct: 1 MSHQQPPSYATEPNTMFVQADPSNFRNIVQKLTGAPPDISSSSFSAVSAAHQKLPLT--- 60
Query: 68 DHLTGPRRSPFKLQERRHTLRKLEIKL-GLTGPFKNSPPSHRFDSPVPSPVTPLTAESLF 127
P++ FKL ERR + +K+E+K+ +T P N SH + SPV+ L F
Sbjct: 61 -----PKKPAFKLHERRQSSKKMELKVNNITNP--NDAFSHFHRGFLVSPVSHLDP---F 120
Query: 128 FRRPVVASPLS-------PPVTVEDKAIADRGFYLHPSPINTPRSSQPPELLNLFPSNSP 181
+ R SP S P E KAIA++GFY PSP S PELL LFP SP
Sbjct: 121 WAR---VSPHSAREEHHAQPDKEEQKAIAEKGFYFLPSP--RSGSEPAPELLPLFPLRSP 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022138667.1 | 3.2e-79 | 81.54 | VQ motif-containing protein 4-like [Momordica charantia] | [more] |
XP_022977123.1 | 3.8e-72 | 83.15 | VQ motif-containing protein 11-like [Cucurbita maxima] | [more] |
XP_008452821.1 | 3.8e-72 | 84.36 | PREDICTED: VQ motif-containing protein 31-like [Cucumis melo] >KAA0064567.1 VQ m... | [more] |
KAE8649934.1 | 8.6e-72 | 79.79 | hypothetical protein Csa_012580 [Cucumis sativus] | [more] |
XP_004145579.1 | 8.6e-72 | 82.42 | VQ motif-containing protein 11 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Q9FHZ3 | 4.5e-15 | 39.13 | VQ motif-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=VQ33 PE=1 SV=1 | [more] |
Q5M750 | 2.2e-14 | 37.50 | VQ motif-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=VQ4 PE=1 SV=1 | [more] |
Q9LDZ1 | 7.9e-12 | 36.56 | VQ motif-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=VQ19 PE=1 SV=1 | [more] |
Q9FNP0 | 7.9e-12 | 34.50 | VQ motif-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=VQ31 PE=1 SV=1 | [more] |
Q9M8L3 | 1.8e-11 | 36.46 | VQ motif-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=VQ11 PE=1 SV=1 | [more] |