Lag0037060 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037060
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPre-mRNA-processing protein 40A-like
Locationchr2: 3088249 .. 3088773 (-)
RNA-Seq ExpressionLag0037060
SyntenyLag0037060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTCTCGGCCGATCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCGTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCCGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCAAGCGACTATGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGCACCGACGGCCCGTCGATGAGCCGTCGGACGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTCTAATTAA

mRNA sequence

ATGGGGAATTCTCGGCCGATCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCGTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCCGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCAAGCGACTATGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGCACCGACGGCCCGTCGATGAGCCGTCGGACGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTCTAATTAA

Coding sequence (CDS)

ATGGGGAATTCTCGGCCGATCGAGTTCGATATCGAATTCCTTCAAACGACGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAACTGCAATCGCGTTCGAGCCCTAGCGCAAGCTTGTGCGAGAGGTCGATGTTGAAATTGCCATCGCCGCCGTGCCGGTCGGAGAGTGCTAGGTTGCCCGGCGACTGCAGCGCGGCGATCCCCTATCATCCTCCGCGTTGCATGGCGGAGAGTGAGAGGATCGCTAAGGATTATCTGTGGCTTGAAGCTTGTTCAAGCGACTATGCATCGTATTTCGGGTGCTGTAAATGGGATGGTTTGAAGGAGAGGGATCCTTTCGTTGAAGCCTACAAGAAATGCACCGACGGCCCGTCGATGAGCCGTCGGACGATCAGTGGCGGTTCTGCTACAAGTGGTGTTAAACGTCCCAGTATCAGAAGAAGAGTTCTTTTTTCTCTCTCACGTAAGTGCTTTGTGCTACGATTCATTCGTACAAGTACTTTTTCTAATTAA

Protein sequence

MGNSRPIEFDIEFLQTTTNVPFSWEAKPGVPKLQSRSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSSDYASYFGCCKWDGLKERDPFVEAYKKCTDGPSMSRRTISGGSATSGVKRPSIRRRVLFSLSRKCFVLRFIRTSTFSN
Homology
BLAST of Lag0037060 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-54
Identity = 115/161 (71.43%), Postives = 129/161 (80.12%), Query Frame = 0

Query: 3   NSRPIEFDIEFLQTTTNVPFSWEAKPGVPKLQSRSSPSASLCERSMLKLPSPPCRSESAR 62
           +S P++FD E LQT TNVPFSWEAKPGVPKLQS SSP+ S  ERS LKLPSPP RSESAR
Sbjct: 7   SSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRSESAR 66

Query: 63  LPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSSDYASY--FGCCKWDGLKERDPFVEA 122
           LP D   AIP   PR  A+S R+AK++LWL+A S D+ S   FGCCK DGLKE DPFVEA
Sbjct: 67  LPDDYGEAIPCSSPR--AKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEA 126

Query: 123 YKKCTDGPSMSRRTISGGSATSGVKRPSIRRRVLFSLSRKC 162
           YKKCT+GPS +RR I GGSAT+GVKRP IRRR+LFSLSRKC
Sbjct: 127 YKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKC 165

BLAST of Lag0037060 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-53
Identity = 114/161 (70.81%), Postives = 128/161 (79.50%), Query Frame = 0

Query: 3   NSRPIEFDIEFLQTTTNVPFSWEAKPGVPKLQSRSSPSASLCERSMLKLPSPPCRSESAR 62
           +S P++FD E LQT TNVPFSWEAKPGVPKLQS SSP+ S  E S LKLPSPP RSESAR
Sbjct: 7   SSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESAR 66

Query: 63  LPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSSDYASY--FGCCKWDGLKERDPFVEA 122
           LP D   AIP   PR  A+S R+AK++LWL+A S D+ S   FGCCK DGLKE DPFVEA
Sbjct: 67  LPDDYGEAIPCSSPR--AKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEA 126

Query: 123 YKKCTDGPSMSRRTISGGSATSGVKRPSIRRRVLFSLSRKC 162
           YKKCT+GPS +RR I GGSAT+GVKRP IRRR+LFSLSRKC
Sbjct: 127 YKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKC 165

BLAST of Lag0037060 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 8.6e-50
Identity = 109/145 (75.17%), Postives = 117/145 (80.69%), Query Frame = 0

Query: 19  NVPFSWEAKPGVPKLQSRSSPSASLCERSMLKLPSPPCRSESARLPGDCSAAIPYHPPRC 78
           NVPFSWEAKPGVPK QS+ SPSASL E SMLKLPSPPCRSESARL GD S  I Y PPRC
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 79  MAESERIAKDYLWLEACSSDYASY--FGCCKWDGLKERDPFVEAYKKCTDGPSMSRRTIS 138
            AES R+AKD+LWLEA S   AS   FGCCK D  K+ DPFVEAYKKCT+  SMS R I+
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 139 GGSATSGVKRPSIRRRVLFSLSRKC 162
           GGSAT+GVKRP+I RRVLFSLSRKC
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKC 146

BLAST of Lag0037060 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-49
Identity = 111/163 (68.10%), Postives = 123/163 (75.46%), Query Frame = 0

Query: 1   MGNSRPIEFDIEFLQTTTNVPFSWEAKPGVPKLQSRSSPSASL--CERSMLKLPSPPCRS 60
           M +SRPIE D EFL T TNVPFSWEAKPGVPK QS+ SP+ASL   E +MLKLPSPPCRS
Sbjct: 1   MASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRS 60

Query: 61  ESARLPGDCSAAIPYHPPRCMAESERIAKDYLWLEACSSDYASY--FGCCKWDGLKERDP 120
           ESARL GD S  I Y PPRC AES R+AKD+LWLEA S   AS   FGCCK D  K+ DP
Sbjct: 61  ESARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDP 120

Query: 121 FVEAYKKCTDGPSMSRRTISGGSATSGVKRPSIRRRVLFSLSR 160
           FVEAYKKC +      R+I+G SAT+G KRP+I RRVLFSLSR
Sbjct: 121 FVEAYKKCRNS-----RSINGASATNGAKRPNIIRRVLFSLSR 158

BLAST of Lag0037060 vs. NCBI nr
Match: KHN17177.1 (hypothetical protein glysoja_010636 [Glycine soja])

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-07
Identity = 44/157 (28.03%), Postives = 72/157 (45.86%), Query Frame = 0

Query: 10  DIEFLQTTTNVPFSWEAKPGVPKLQSRSSPSASLCERSMLKLPSPPCRSESARLPGDCSA 69
           D+   +T  NVPFSWE KPG+ K+ +      S+ E  + KLP PPC  E         +
Sbjct: 8   DVHCEETIVNVPFSWEHKPGLSKVTTHGQTGTSMEEEFLAKLPPPPCTPE--------ES 67

Query: 70  AIPYHPPRCMAESERIAKDYLWLEACSSD---YASYFGCCKWDGLKERDPFVEAYKKCTD 129
           A  +H    + + +      + L  C+     Y +    C W  ++++DPF+ A+K+CT 
Sbjct: 68  ATTHHKNHPLLDFQ------IPLPPCAFQPPFYRTSSRRCLW--VQDKDPFLAAFKECTK 127

Query: 130 GPSMSRRTISGGSATSGVKRPSIRRRVLFSLSRKCFV 164
               S  T++      G++    +    FS +R C V
Sbjct: 128 NHQKSSATVNKKLIKDGIESRVRKSMSFFSCTRSCTV 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608406.11.5e-5471.43hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037747.11.3e-5370.81hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064469.18.6e-5075.17hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... [more]
XP_004141298.14.3e-4968.10uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... [more]
KHN17177.15.3e-0728.03hypothetical protein glysoja_010636 [Glycine soja][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 14..170
NoneNo IPR availablePANTHERPTHR33696:SF12BNAA08G25910D PROTEINcoord: 14..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037060.1Lag0037060.1mRNA