Lag0037007 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037007
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Agamous-like MADS-box protein
Location	chr2: 2756627 .. 2758225 (-)
RNA-Seq Expression	Lag0037007
Synteny	Lag0037007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGACGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATCCAAGGTATTGCCGTTTCTTCAACTTTTAAATTGTTTCAATTTATTAAAACAAGAAAAAGAACCAAAGATAATCTATATCCACGATTAAAAAACACACACACACACACACTTCTTTTTCTTTTTAAAAAGTTGTTTTTGTATGTCCAAGAATCGATGATGTGTTGGATCGACTCGTCAATCTCAGTGTAGATGAACGAGAAAGGTCAGCAGATTTTTGCCCTTTTCTTTCTTTCTTTCTTTATCTTGGTATTTTTGCAACATATTTTGGGCTAAATTAGCTTTCTTGTATCTATTTTGGACGGTTTTCAAAAGACTGCGGAATAAAGAGGTAAATATTTGCTCCTGTGTCAACCGCGAAAATGCAATTAAACAGTCAGTATACATTAAAAATGAACTGACACGTTTTATTGAGCAGTTTCTCATTATGTGCAAGGACAAGTCGATGCAAGAAAGCAATCCACCACAACAACACACGTCCAGGTTCTAATTTGTCATTAATCAATTTAATGATTTGGTACTTTCTTCTAACGAACAAATAACAAACAATAATGACAACAATCATATTTATAAACTTAGCTATAGAGTAGTCAATCAAATTATAATGTAATATGCAATATTGTCGACAGAGTGAATCATATTAGTGAAATAGCTTATATTCTTATGTGTTCTATCTATTATAAGTAAATGATATATTTATTTTGTAAATATATTTTATTTTACAAAAAGAATAATTCTTCATGTCGAGTTATTGGATGATTATTAATTAAATAATCGCTTTAATGGGTTCATGTGAAGCAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGGTACACATGAAATCCACTTTCGGCGGTGAGATCGAGAGAGTAGAACTATTTGCTTTCCGATTTTGAGGGTTTTTGTTTTTCTAATTATAATTACTGTTGAACACGACCACAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGAAAAGGGCTTGGGTAACGTGTAAAGCAGCAATTGTACTTCAATGTTATCTGTTCAATCTGAAGAAAAATTTGAAGTTATTTTGATTGTAAAATTTGTTCTGGATGGTTCAATTCTAGGGCATTTGAAGGCGTTTTGTCCAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAGATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCACAAGGTTAGTGGTTCTGTTTTTGACTGATTGATCGATCGATTCTACTGCTGTTCTGAATTTTGGATAGATGGCTGAATTTTACAGTTTGAGTGATAAATTCTGCAGCGAGTGCTCCAGCAGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTCGGTGAAAGATAG

mRNA sequence

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGACGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATCCAAGCAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGAAAAGGGCTTGGGGCATTTGAAGGCGTTTTGTCCAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAGATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCACAAGCGAGTGCTCCAGCAGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTCGGTGAAAGATAG

Coding sequence (CDS)

ATGGGGAGAGTGAAGCTTCCAATCAAGAAGATTGAGGACGTTTCCAGACGTGGAGTCACTTTCTGCAAAAGGAAAAAGAGACTCATCAAGAATGCTTACGAATTATCTGTTCTCTGTGACATTGATATTGCTCTCATCATTCTCTCTCCCACCGGAGAACTCAGCTTTTTCTCTGCAAATCCAAGCAGCGGTGGTAGCAATGACTACGAGCAACGCATAAAGAATATTCAGCATGAAGTTCTCACCAGCAAATCTCAGTTACGGGAGCTAAGAAAAGGGCTTGGGGCATTTGAAGGCGTTTTGTCCAAGATCAGAACGATCGGCGAGGCGGAAAATGTGGAGAAGATTCTCGAGGAAACCTTGAGGAAATTGCTTGCGCACAAGCGAGTGCTCCAGCAGCAGTGCAATTCCTCTGAACCGTCGGCGGAACTTTTACGCGTACGTAACCCTAACCATCCACAGTTTACGTTTTCAGTCGGTGAAAGATAG

Protein sequence

MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSANPSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRTIGEAENVEKILEETLRKLLAHKRVLQQQCNSSEPSAELLRVRNPNHPQFTFSVGER

Homology

[Close]

BLAST of Lag0037007 vs. NCBI nr
Match: KAG5033996.1 (hypothetical protein JHK87_008906 [Glycine soja] >KAG5048193.1 hypothetical protein JHK85_009296 [Glycine max] >KAG5065315.1 hypothetical protein JHK86_009046 [Glycine max])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKLPIKKIE+ + R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G  +FFS N
Sbjct: 1   MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATFFSGN 60

Query: 61  PS---------------SGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G S   + +I++++ E+ T KSQL E+ K L  FEG  S+I 
Sbjct: 61  KSIEEILERYVNLSEGEHGSSMTSDSQIEDLRREIFTCKSQLEEMEKRLRIFEGDPSEIT 120

Query: 121 TIGEAENVEKILEETLRKLLAHKRVLQQ 134
           T+ EAE  E +L +TL+++   K VL++
Sbjct: 121 TLSEAEYREYVLRDTLKQVQLRKCVLEE 148

[Close]

BLAST of Lag0037007 vs. NCBI nr
Match: KAG6626446.1 (hypothetical protein CIPAW_15G048700 [Carya illinoinensis])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-24
Identity = 75/170 (44.12%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ + R VTF KR+  LIK AYELSVLCDID+ALI+ SP+G LS F+ N
Sbjct: 1   MGRVKLQIKRIENTANRQVTFSKRRNGLIKKAYELSVLCDIDVALIMFSPSGRLSHFAGN 60

Query: 61  PS-----------------SGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSK 120
            S                 S  ++  + +++ +Q E+L+ KSQL++++  L  FEG  S+
Sbjct: 61  KSIEEILARYFNLPEHERGSSPTSTADSKLEEVQQEILSCKSQLKDMQNRLRVFEGDPSE 120

Query: 121 IRTIGEAENVEKILEETLRKLLAHKRVLQQQCNS--SEPSAELLRVRNPN 152
           I T+ EAE  E+IL++TLR +   K+VL+Q  NS  + P+A  ++V   N
Sbjct: 121 IITLCEAEYREQILKDTLRHVHMRKQVLEQNGNSYVAPPTASEVQVLPQN 170

[Close]

BLAST of Lag0037007 vs. NCBI nr
Match: PPS03948.1 (hypothetical protein GOBAR_AA16714 [Gossypium barbadense])

HSP 1 Score: 120.9 bits (302), Expect = 9.9e-24
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ + R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G LS FS N
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGN 60

Query: 61  PS---------------SGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G       +++  Q E++  KS++  + K L  FEG  S+I 
Sbjct: 61  KSIEEILGRYVNLPEHERGSPESINPQLEEFQQEIINCKSRIANMEKRLRIFEGDASEIT 120

Query: 121 TIGEAENVEKILEETLRKLLAHKRVLQQQCNSSEP 141
           T+ +A+  E+ILEETL+++  HK+VL+++  S  P
Sbjct: 121 TLIQADYHEQILEETLKQVRLHKQVLEEKYTSPGP 155

[Close]

BLAST of Lag0037007 vs. NCBI nr
Match: PPD68433.1 (hypothetical protein GOBAR_DD34693 [Gossypium barbadense])

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-23
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ + R VTF KR+  LIK AYELSVLCD+D+ALI+ SP+G LS FS N
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGN 60

Query: 61  PS---------------SGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIR 120
            S                G       +++  Q E++  KS++  + K L  FEG  S+I 
Sbjct: 61  KSIEEILGRYVNLPEHERGSPECINPQLEEFQQEIINCKSRIANMEKRLRIFEGDASEIT 120

Query: 121 TIGEAENVEKILEETLRKLLAHKRVLQQQCNSSEP 141
           T+ +A+  E+ILEETL+++  HK+VL+++  S  P
Sbjct: 121 TLIQADYHEQILEETLKQVRLHKQVLEEKYTSPGP 155

[Close]

BLAST of Lag0037007 vs. NCBI nr
Match: XP_042961124.1 (agamous-like MADS-box protein AGL1 isoform X3 [Carya illinoinensis])

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-23
Identity = 74/179 (41.34%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGRVKL IK+IE+ + R VTF KR+  LIK AYELSVLCDID+ALI+ SP+G LS F+ N
Sbjct: 1   MGRVKLQIKRIENTANRQVTFSKRRNGLIKKAYELSVLCDIDVALIMFSPSGRLSHFAGN 60

Query: 61  --------------------------PSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGL 120
                                      +S  ++  + +++ +Q E+L+ KSQL++++  L
Sbjct: 61  KRLQNLEFLQRALLKLKSEADIRTCQEASSPTSTADSKLEEVQQEILSCKSQLKDMQNRL 120

Query: 121 GAFEGVLSKIRTIGEAENVEKILEETLRKLLAHKRVLQQQCNS--SEPSAELLRVRNPN 152
             FEG  S+I T+ EAE  E+IL++TLR +   K+VL+Q  NS  + P+A  ++V   N
Sbjct: 121 RVFEGDPSEIITLCEAEYREQILKDTLRHVHMRKQVLEQNGNSYVAPPTASEVQVLPQN 179

[Close]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot
Match: Q9LM46 (Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana OX=3702 GN=AGL104 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFS 59
          MGRVKL IK+IE+ + R VTF KR+  LIK AYELS+LCDIDIALI+ SP+  LS FS
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58

[Close]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot
Match: Q1PFC2 (Agamous-like MADS-box protein AGL66 OS=Arabidopsis thaliana OX=3702 GN=AGL66 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFS 59
          MGRVKL IK+IE+ + R VTF KR+  LIK AYELS+LCDIDIAL++ SP+  LS FS
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58

[Close]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot
Match: Q9ATE5 (MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ +K+IE+ + R VTF KR+  L+K  +ELSVLCD  I LII S  G+L  + + 
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  PSS------------GGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRTIG 120
           P S            G S   E     +  EV   +     L+  L  ++G    +    
Sbjct: 64  PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYE 123

Query: 121 EAENVEKILEETLRKLLAHK-RVLQQQCNSSEPSAELLRVRN 150
           E   +EK LE  L K+ A K  ++QQQ  + + + ++L   N
Sbjct: 124 ELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKEN 165

[Close]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ IK+IE+ + R VTFCKR+  L+K AYELSVLCD ++ALI+ S  G +  +S N
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  --------------PSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRT 120
                          S+ G +  E   +  Q E    + Q++ L+       G      T
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 IGEAENVEKILEETLRKLLAHKRVL 132
           + E + +E  LE  + ++ + K  L
Sbjct: 121 VKELKQLENRLERGITRIRSKKHEL 145

[Close]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 1   MGRVKLPIKKIEDVSRRGVTFCKRKKRLIKNAYELSVLCDIDIALIILSPTGELSFFSAN 60
           MGR K+ IK+IE+ + R VTFCKR+  L+K AYELSVLCD ++ALI+ S  G +  +S N
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNN 60

Query: 61  --------------PSSGGSNDYEQRIKNIQHEVLTSKSQLRELRKGLGAFEGVLSKIRT 120
                          S+ G +  E   +  Q E    + Q++ L+       G      T
Sbjct: 61  NIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLT 120

Query: 121 IGEAENVEKILEETLRKLLAHKRVL 132
           + E + +E  LE  + ++ + K  L
Sbjct: 121 VKELKQLENRLERGITRIRSKKHEL 145

The following BLAST results are available for this feature:

BLAST of Lag0037007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5033996.1	2.0e-24	47.30	hypothetical protein JHK87_008906 [Glycine soja] >KAG5048193.1 hypothetical prot...	[more]
KAG6626446.1	2.6e-24	44.12	hypothetical protein CIPAW_15G048700 [Carya illinoinensis]	[more]
PPS03948.1	9.9e-24	43.87	hypothetical protein GOBAR_AA16714 [Gossypium barbadense]	[more]
PPD68433.1	2.2e-23	43.87	hypothetical protein GOBAR_DD34693 [Gossypium barbadense]	[more]
XP_042961124.1	6.4e-23	41.34	agamous-like MADS-box protein AGL1 isoform X3 [Carya illinoinensis]	[more]

BLAST of Lag0037007 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM46	1.3e-13	67.24	Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana OX=3702 GN=AGL104 P...	[more]
Q1PFC2	2.1e-13	65.52	Agamous-like MADS-box protein AGL66 OS=Arabidopsis thaliana OX=3702 GN=AGL66 PE=...	[more]
Q9ATE5	1.8e-12	32.72	MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1	[more]
F6I457	4.0e-12	33.10	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]
A0A217EJJ0	4.0e-12	33.10	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 42.35 coord: 3..23 score: 48.0 coord: 23..38 score: 63.66
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.3E-23 score: 94.4
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..55 e-value: 1.7E-19 score: 69.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 23.506517
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..93 e-value: 9.5E-18 score: 66.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..70
None	No IPR available	PANTHER	PTHR48019:SF7	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1	coord: 71..139 coord: 1..62
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 71..139 coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037007.1	Lag0037007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity