Lag0037004 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037004
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 2749905 .. 2750542 (-)
RNA-Seq Expression	Lag0037004
Synteny	Lag0037004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGAAAGGCAAAATGGACATGGTACAAAGGGTTTACGTAGCCTTAAAAGTGAGGCTCTGTCTTGAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCAGAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGGAAAAGTGGCATCAGGCCTCGTCTCGTCTGCTGTGTTGCAGGTTGTCTACTCGATTGCATTGCATTGCATTTTAACCTTACACTTTTCTTTATCCTTCTTCTACACTGCCATACAAAGCCATATCACTTTTCCCTCTGACCCAAGCTGAGTTTTGAGAAGACCATTCTTAACAAGTAAGCAGCTGGGTTGGTTTTGTCCTCTGTCTCTCCATTCTCTCTCGCTAACCACTCCGTTTCAACTCTCAATATGCCATTTCCACTGTCCTTGGAGGCTCGCCTGCTTCTCTTTATCGCGCTTTTCTCTCTTCTCCTCTCCGGGGAAAACAGAGCGACAATGGGGGTCGTCGTCGATCAACAACCACCGTCGAAATTGCAGGAGAACCACCGGAAGCATCTGCCGCCCCCGCCCCCGCCGTCACGACACTCATTCAGTGCGCTCTTTGCGAGCAAGAGGAAGGTTCCAAACACTTCGGATCCACTCCATAA

mRNA sequence

ATGAAAGAGAAAGGCAAAATGGACATGGTACAAAGGGTTTACGTAGCCTTAAAAGTGAGGCTCTGTCTTGAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCAGAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGGAAAAGTGGCATCAGGCCTCGTCTCGTCTGCTGTGTTGCAGGCTCGCCTGCTTCTCTTTATCGCGCTTTTCTCTCTTCTCCTCTCCGGGGAAAACAGAGCGACAATGGGGGTCGTCGTCGATCAACAACCACCGTCGAAATTGCAGGAGAACCACCGGAAGCATCTGCCGCCCCCGCCCCCGCCGTCACGACACTCATTCAGTGCGCTCTTTGCGAGCAAGAGGAAGGTTCCAAACACTTCGGATCCACTCCATAA

Coding sequence (CDS)

ATGAAAGAGAAAGGCAAAATGGACATGGTACAAAGGGTTTACGTAGCCTTAAAAGTGAGGCTCTGTCTTGAGAGGTTGAAGGGACTGAAAGCTAGAAAGAAAAGCAGAATGGAAGAAAGAATATTAAAAAGGCTTCTGCTGAAAAGGAAAAGGAAAAGTGGCATCAGGCCTCGTCTCGTCTGCTGTGTTGCAGGCTCGCCTGCTTCTCTTTATCGCGCTTTTCTCTCTTCTCCTCTCCGGGGAAAACAGAGCGACAATGGGGGTCGTCGTCGATCAACAACCACCGTCGAAATTGCAGGAGAACCACCGGAAGCATCTGCCGCCCCCGCCCCCGCCGTCACGACACTCATTCAGTGCGCTCTTTGCGAGCAAGAGGAAGGTTCCAAACACTTCGGATCCACTCCATAA

Protein sequence

MKEKGKMDMVQRVYVALKVRLCLERLKGLKARKKSRMEERILKRLLLKRKRKSGIRPRLVCCVAGSPASLYRAFLSSPLRGKQSDNGGRRRSTTTVEIAGEPPEASAAPAPAVTTLIQCALCEQEEGSKHFGSTP

Homology

[Close]

BLAST of Lag0037004 vs. NCBI nr
Match: KAG6608442.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 57  PRLVCCVAG--------------SPASLYRAFLSSPLRGKQSDNGGRRR-STTTVEIAGE 116
           PRLVCCVAG              S AS+   FLSS LR KQ DNGGRR  ST+TV+ AGE
Sbjct: 544 PRLVCCVAGLAAEKTIVKNVRGSSAASVNGDFLSSGLRRKQRDNGGRRHPSTSTVKNAGE 603

Query: 117 PPEASAAPAPAVTTLIQCALCEQEEGSKHFGSTP 136
            PEA+A    A+ TLIQCALC+QEEG KHFGS+P
Sbjct: 604 APEAAA--VAAMETLIQCALCQQEEGPKHFGSSP 635

[Close]

BLAST of Lag0037004 vs. NCBI nr
Match: KAG6591407.1 (Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-13
Identity = 66/133 (49.62%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 24  ERLKGLKARKKSRMEERILKRLLLKRKR---------------KSGIRP---RLVCCVAG 83
           + LKGLKARKKS MEE ILKRL LKRK                 S + P    +      
Sbjct: 480 DMLKGLKARKKSTMEEGILKRLALKRKSGLVSSAVVLFCSNWVSSPVSPFQHAISTLHGS 539

Query: 84  SPASLYRAFLSSPLRGKQSDNGGRR-RSTTTVEIAGEPPE--ASAAPAPAVTTLIQCALC 136
           S AS+   F SS L GKQS NGGRR R T+T + AGE PE  A A  + AV +++QCAL 
Sbjct: 540 SAASVNGGFHSSGLWGKQSGNGGRRCRPTSTFKCAGESPEEAAIAIVSAAVESVVQCALR 599

[Close]

BLAST of Lag0037004 vs. NCBI nr
Match: KAG7037778.1 (hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-12
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 66  SPASLYRAFLSSPLRGKQSDNGGRRR-STTTVEIAGEPPEASAAPAPAVTTLIQCALCEQ 125
           S AS+   FLSS LR KQ DNGGRR  ST+TV+ AGE PEA+A    A+ TLIQCALC+Q
Sbjct: 39  SAASVNGDFLSSGLRRKQRDNGGRRHPSTSTVKNAGEAPEAAA--VAAMETLIQCALCQQ 98

Query: 126 EEGSKHFGSTP 136
           EEG KHFGS+P
Sbjct: 99  EEGPKHFGSSP 107

The following BLAST results are available for this feature:

BLAST of Lag0037004 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608442.1	4.1e-15	59.57	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591407.1	2.2e-13	49.62	Cyclin-A3-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037778.1	4.2e-12	66.20	hypothetical protein SDJN02_01409, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0037004 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037004.1	Lag0037004.1	mRNA