Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGCCAGCGCCTCGTTTCGGCCCGTGGTTCCCCAGATCACCCCGGTTCCGCCTGGTTCGTCCCGAAACACCTCCGAATTCCTAAAAACTTTAGGAGAAAAACAGGTATAAAAACCTCTCTTCATCACTGAAGAAGGGTCCGAAACTTTATGCTCGACTTTGCCCCTTACTTTTGAGTCTCCTCGGTTTTCTGACTTAGGCGTCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAACGATTTTTACTGGTTTTGTAGGTCACTGTCTTCCCCAGCTTCTACAAATTCACTGTCGGTGTCACATGAAGGTCAGGTGAGTCATCTGCCCGAATTTTGACATCAACAAATATAAATCAATTGATTTAAAATATTTACTCTTATTGGGATTAGAGGTTTGAATCTTCTGCATCACTTTAAGAGGGAGAGAGAAAAAAACTTTCTAAATATCACTATGGGTTTGATGTCCAAATCTATTATTCATTCAGAAAAAGCGGTTCAATTTATGTCCAAGATCTTTTCATCCAGCTCTACTTGCATTTAGAGATGAGATATCCACATATACATACTTAAATATTATAAAATGAAGAATAGAATGATGGACAAATTCTTTATCCACCCACGAAGATATGTTGGGATCACCATCTTAGTTTTTAAACTTTGGATATTACGGTCCCGTTTGATAATCATTTTGTTTTTGAAAATTATACTTTGTTTTTTCTCCCAATTTATTTATCATGGTTTTCTTTTTTGTTAAATACACATTTAAATTCTTAGCCAAATTCCAAAAACAAAAACAAATTTTTGAAAACAAGAGGAGAAGGTAGTTAACATAACACAGAAACTTAGAGATGAAAGTGATGTTTATAAGCTTAATTTTAAAAAACTAAAAACCAAGCCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGATTTTTGAAAATTAAGCTTAAAAACACTACATGCACCTACAATTTCTTTGTTTTGTCATCTACCTCATTTTCATGTTTTAAAAAACCAAGTCAAAATTTGAAAACTAGAAAAAATAGTTTTCAAAAACTTGCTTTTGTTTTTTAAATTTGGCTAGGAACTCAAGTGTGTCTTTAACAAGGATGAAAACCAATGTAAGAAGATTGAATGAAAACAAGCATAATTTTCAAAAACCAAAAACCAAAAACCAAATGGTAATCAAACGGGGCCCAAATGATTATCAAATGACTATAGTTTTCAAAAGCTTGTTTTTGTTTTTAGGGTTTAAATGTGTCAAGTGAAAACCATACAAAGGAAATTTGGAGAAAACAATATAATTTTCAAAAACCAAAAACAAAATGGTTATCAAATAACACCACAATTATTATGATTTATTATGATTGTGTTAAAGTTGATCTAAGAAACATACCTTGACTGAAATGATAATATATATATATATATTAACAATTGATAATATATTTTAGAAGAACAACGACAAGAGAGAATCAAAACCCTCTCCCTCTCATTCGTTCTCTTTCCTCGTCGGCCCGAACAACAAAAGATCCACAACGTTGAAAACCTATTCTTCTCATTCGTTCCAGCAAAAGACTTAGATCTGGTTTGGGTTTCTTCTTCTCCGTCGAGATTTGTTCATGTCTGAGAAGGAGACCCATGTCAAGGCAGCTTACTGACCATGTGGATTGCACGTGTTTTATGATTAGTTTGTTAGTTATTTAGGGTGATTTTCCTCTGCTGTCATTTGTATCAGAATATAATGTTTACAGGAGTTTTTCTCCCTTCCTTATATATATTCCATTATCTTGATTATGTAAGAGTGATTGAGATCTAATGAATACGGTGGAAGGGTTTCACCTGTACCTTCTTGATTCTTGATTTTCTCTCTAAGTTCTCTTGGTATCAGAGCTCTCAAGTCCAACGACTGAACTCGATTCCTGAAATTTGTGCGGTGTTCTTTTTTTTTTTTGTTTCTTTTGCATCATTCGTCTTCTACAACAACTCTGATTATCTGAGCATCGATGGATTCCTGAACCACGGAAAATCAAACTGCCGAAGATCTTGGAAGTTCGGCAAGTCAGATCGTCAATCCTGGTAACAAAATTTCAACTGTTAAACTCAACAATGATAATTTCCTCATGTGGAAAGTCCAAATAGAATTTGCCCTAGAAGGTCATAGCCTGGGAAAATTTATCGCAAAGGACTATATATTTCCATCTGAACGTATACCTGTTAGTGAAGGTTCGTCTGTTACTAGGATTAATCCAGAATATATGAATTGGAAGAAGCAAGATAGCTTGATTTCCTCGTGGTTACTTGGATCTATGTCCGATAATATCTTAGAACAGGTTATACACTGTAAGACAGCGAAAGAAATTTGACACTGTTTGTTTCAAATTTTTAATTCAAGGAACAGAGCTCAGATAATGAGATTGAAATCGAAGCTACAATCTACTCAAAAAGGATCGTTGTCATTGAATGAGTATTTTGCACAAATCAAAAAGTGCGTAGATGCACTTGCTGCTGTAGGCAAGACTGTTGACACAGAGGATCACATTATGTACATTCTTAATGGCTTAGGTTCAGAGTATGAATCTATGGTCTCTGCACTAACGACTTCCACAGATGATCAAAGTGTGCAAGATGTCATGGCTTACCTTCTCACTCATGAGAATCGAATAGAGAGCAAGCTGAAGAATGTGAACTCAGATGGAACTCCTCCTTCAGCCAATCTAATGACTCAAAGTCATCACACTGTGGAATCTGACTCTCAAAAGCCGAATCCTTCGTATCAGGGAAATCAGAATTATAACTCTCGAGGTCGAGGCCGTTCGAATCGGGGAGGAAGATCTTGGAATAACAGAAACAAGCCCCAGTATCAAATTTGTTTCAAATTTGGTCATACGGCGATAAAGTGCTACTCTCTCGGTGGTCGTTTTGATCAAGGTCGAGGTGTTTCTCAGTCGAATAATATTGCTCCTAATAACTTTCACCCTCAGTTTGGTGCAGGTTCATTCCCACACAACTCCTCACCGATGACTGCTATGCTGACTGCAAGCGAACTCAACCAAGATAATGGTTGGTATCCAAATTTGGGAGCCACCAATCATCTCACTAACAACTTCAGCAATCTTGCAGTTGGTGCTGAATATTCAGGGGCTAATCAGATGCAAGTAGGAAATGGTACGGGTCTCTCTATCTCCCACTATGGTTATACATCCTTTTCCTCATCCAATCACATATTTCATTTAAAGAACTTACTTCATGTGCCTCAAATAACCAAGAACTTGATAAGCGTCAGTCAGTTCGCTAAAGATAACTTGGTATACTTTGAATTTCACCCTGAATTTTGTTGTGTGAAGGACTCCCGTACTGGCCAAATCCTCCTTCGAGGAGCACTCCATGATGGGTTGTACCGGTTTGATCTCTCACTACCTTAG
mRNA sequence
ATGGTCGGCCAGCGCCTCGTTTCGGCCCGTGGTTCCCCAGATCACCCCGGTTCCGCCTGGTTCGTCCCGAAACACCTCCGAATTCCTAAAAACTTTAGGAGAAAAACAGGCGTCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAACGATTTTTACTGGTTTTGTAGGTCACTGTCTTCCCCAGCTTCTACAAATTCACTGTCGGTGTCACATGAAGGTCAGAGCTCTCAAGTCCAACGACTGAACTCGATTCCTGAAATTTGTGCGGTGTTCTTTTTTTTTTTTGTTTCTTTTGCATCATTCGTCTTCTACAACAACTCTGATTATCTGAGCATCGATGGATTCCTGAACCACGGAAAATCAAACTGCCGAAGATCTTGGAAGTTCGGCAAGTCAGATCGTCAATCCTGGAACAGAGCTCAGATAATGAGATTGAAATCGAAGCTACAATCTACTCAAAAAGGATCGTTGTCATTGAATGAGTATTTTGCACAAATCAAAAAGTGCGTAGATGCACTTGCTGCTGTAGGCAAGACTGTTGACACAGAGGATCACATTATGTACATTCTTAATGGCTTAGGTTCAGAGTATGAATCTATGGTCTCTGCACTAACGACTTCCACAGATGATCAAAGTGTGCAAGATGTCATGGCTTACCTTCTCACTCATGAGAATCGAATAGAGAGCAAGCTGAAGAATGTGAACTCAGATGGAACTCCTCCTTCAGCCAATCTAATGACTCAAAGTCATCACACTGTGGAATCTGACTCTCAAAAGCCGAATCCTTCGTATCAGGGAAATCAGAATTATAACTCTCGAGGTCGAGGCCGTTCGAATCGGGGAGGAAGATCTTGGAATAACAGAAACAAGCCCCAGTATCAAATTTGTTTCAAATTTGGTCATACGGCGATAAAGTGCTACTCTCTCGGTGGTCGTTTTGATCAAGGTCGAGGTGTTTCTCAGTCGAATAATATTGCTCCTAATAACTTTCACCCTCAGTTTGGTGCAGGTTCATTCCCACACAACTCCTCACCGATGACTGCTATGCTGACTGCAAGCGAACTCAACCAAGATAATGGTTGGTATCCAAATTTGGGAGCCACCAATCATCTCACTAACAACTTCAGCAATCTTGCAGTTGGTGCTGAATATTCAGGGGCTAATCAGATGCAAGTAGGAAATGGTACGGGTCTCTCTATCTCCCACTATGGTTATACATCCTTTTCCTCATCCAATCACATATTTCATTTAAAGAACTTACTTCATGTGCCTCAAATAACCAAGAACTTGATAAGCGTCAGTCAGTTCGCTAAAGATAACTTGGTATACTTTGAATTTCACCCTGAATTTTGTTGTGTGAAGGACTCCCGTACTGGCCAAATCCTCCTTCGAGGAGCACTCCATGATGGGTTGTACCGGTTTGATCTCTCACTACCTTAG
Coding sequence (CDS)
ATGGTCGGCCAGCGCCTCGTTTCGGCCCGTGGTTCCCCAGATCACCCCGGTTCCGCCTGGTTCGTCCCGAAACACCTCCGAATTCCTAAAAACTTTAGGAGAAAAACAGGCGTCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAACGATTTTTACTGGTTTTGTAGGTCACTGTCTTCCCCAGCTTCTACAAATTCACTGTCGGTGTCACATGAAGGTCAGAGCTCTCAAGTCCAACGACTGAACTCGATTCCTGAAATTTGTGCGGTGTTCTTTTTTTTTTTTGTTTCTTTTGCATCATTCGTCTTCTACAACAACTCTGATTATCTGAGCATCGATGGATTCCTGAACCACGGAAAATCAAACTGCCGAAGATCTTGGAAGTTCGGCAAGTCAGATCGTCAATCCTGGAACAGAGCTCAGATAATGAGATTGAAATCGAAGCTACAATCTACTCAAAAAGGATCGTTGTCATTGAATGAGTATTTTGCACAAATCAAAAAGTGCGTAGATGCACTTGCTGCTGTAGGCAAGACTGTTGACACAGAGGATCACATTATGTACATTCTTAATGGCTTAGGTTCAGAGTATGAATCTATGGTCTCTGCACTAACGACTTCCACAGATGATCAAAGTGTGCAAGATGTCATGGCTTACCTTCTCACTCATGAGAATCGAATAGAGAGCAAGCTGAAGAATGTGAACTCAGATGGAACTCCTCCTTCAGCCAATCTAATGACTCAAAGTCATCACACTGTGGAATCTGACTCTCAAAAGCCGAATCCTTCGTATCAGGGAAATCAGAATTATAACTCTCGAGGTCGAGGCCGTTCGAATCGGGGAGGAAGATCTTGGAATAACAGAAACAAGCCCCAGTATCAAATTTGTTTCAAATTTGGTCATACGGCGATAAAGTGCTACTCTCTCGGTGGTCGTTTTGATCAAGGTCGAGGTGTTTCTCAGTCGAATAATATTGCTCCTAATAACTTTCACCCTCAGTTTGGTGCAGGTTCATTCCCACACAACTCCTCACCGATGACTGCTATGCTGACTGCAAGCGAACTCAACCAAGATAATGGTTGGTATCCAAATTTGGGAGCCACCAATCATCTCACTAACAACTTCAGCAATCTTGCAGTTGGTGCTGAATATTCAGGGGCTAATCAGATGCAAGTAGGAAATGGTACGGGTCTCTCTATCTCCCACTATGGTTATACATCCTTTTCCTCATCCAATCACATATTTCATTTAAAGAACTTACTTCATGTGCCTCAAATAACCAAGAACTTGATAAGCGTCAGTCAGTTCGCTAAAGATAACTTGGTATACTTTGAATTTCACCCTGAATTTTGTTGTGTGAAGGACTCCCGTACTGGCCAAATCCTCCTTCGAGGAGCACTCCATGATGGGTTGTACCGGTTTGATCTCTCACTACCTTAG
Protein sequence
MVGQRLVSARGSPDHPGSAWFVPKHLRIPKNFRRKTGVGGGVAYTTPVSNDFYWFCRSLSSPASTNSLSVSHEGQSSQVQRLNSIPEICAVFFFFFVSFASFVFYNNSDYLSIDGFLNHGKSNCRRSWKFGKSDRQSWNRAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYESMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQSHHTVESDSQKPNPSYQGNQNYNSRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAIKCYSLGGRFDQGRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSNHIFHLKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDLSLP
Homology
BLAST of Lag0036910 vs. NCBI nr
Match:
KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 300.4 bits (768), Expect = 2.7e-77
Identity = 173/344 (50.29%), Postives = 232/344 (67.44%), Query Frame = 0
Query: 141 AQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYES 200
AQ M+ K+KL + +KGS+ L EYF +I +CVDALA++ K V ++DHI+YIL GLGS+Y+S
Sbjct: 137 AQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQS 196
Query: 201 MVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQ-SHHTVESDSQ 260
M+S ++ TD SVQ+VM+ LLT E++ ESKL S+ PS N++TQ + ES +
Sbjct: 197 MISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGAESYIR 256
Query: 261 KPNPSYQGNQNYN---SRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAIKCYSLGGRFDQ 320
+Y N +YN RG GRSNRG R NRNKPQ QIC K G++A +C F +
Sbjct: 257 TNQNNYHNNHSYNQRGGRGNGRSNRGRR--GNRNKPQCQICAKLGYSADRC------FFR 316
Query: 321 GRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNF 380
S S+ +PN+ + + + +N M+AM+ A +LN D+ WYP+ GATNHLT++
Sbjct: 317 YTPRSNSSGYSPNSHNTSY---TNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSL 376
Query: 381 SNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSN---HIFHLKNLLHVPQITKNLIS 440
SNL++G+EY G NQ+ NG+GL I+HYG SF+SS F L NLL VP ITKNLIS
Sbjct: 377 SNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLIS 436
Query: 441 VSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
VSQFAKDN V+FEFHP C VKD TGQ+LL+G L+DGLY+F +
Sbjct: 437 VSQFAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTI 466
BLAST of Lag0036910 vs. NCBI nr
Match:
TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 300.4 bits (768), Expect = 2.7e-77
Identity = 173/344 (50.29%), Postives = 232/344 (67.44%), Query Frame = 0
Query: 141 AQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYES 200
AQ M+ K+KL + +KGS+ L EYF +I +CVDALA++ K V ++DHI+YIL GLGS+Y+S
Sbjct: 137 AQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQS 196
Query: 201 MVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQ-SHHTVESDSQ 260
M+S ++ TD SVQ+VM+ LLT E++ ESKL S+ PS N++TQ + ES +
Sbjct: 197 MISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGAESYIR 256
Query: 261 KPNPSYQGNQNYN---SRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAIKCYSLGGRFDQ 320
+Y N +YN RG GRSNRG R NRNKPQ QIC K G++A +C F +
Sbjct: 257 TNQNNYHNNHSYNQRGGRGNGRSNRGRR--GNRNKPQCQICAKLGYSADRC------FFR 316
Query: 321 GRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNF 380
S S+ +PN+ + + + +N M+AM+ A +LN D+ WYP+ GATNHLT++
Sbjct: 317 YTPRSNSSGYSPNSHNTSY---TNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSL 376
Query: 381 SNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSN---HIFHLKNLLHVPQITKNLIS 440
SNL++G+EY G NQ+ NG+GL I+HYG SF+SS F L NLL VP ITKNLIS
Sbjct: 377 SNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLIS 436
Query: 441 VSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
VSQFAKDN V+FEFHP C VKD TGQ+LL+G L+DGLY+F +
Sbjct: 437 VSQFAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTI 466
BLAST of Lag0036910 vs. NCBI nr
Match:
KZV26181.1 (hypothetical protein F511_06348 [Dorcoceras hygrometricum])
HSP 1 Score: 253.8 bits (647), Expect = 2.9e-63
Identity = 165/397 (41.56%), Postives = 232/397 (58.44%), Query Frame = 0
Query: 101 SFVFYNNSDYLSIDGFLNHGKSNCRRSWKFG-KSDRQSWNR----------AQIMRLKSK 160
+FV +N D L + FL S +S G ++ Q W R A++M+ K +
Sbjct: 14 NFVTWNRQDQL-LFSFLLASMSESAQSQMIGCQTSSQLWTRVTQLFATRSKARVMQYKLQ 73
Query: 161 LQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYESMVSALTTST 220
LQ+ +KG+LS+ +Y ++K +D LAA G ++ +D I++IL G+G EYES+V +T+
Sbjct: 74 LQTLKKGNLSMKDYLGKMKGYIDILAACGNSIPEDDQILHILGGVGPEYESVVVHVTSRV 133
Query: 221 DDQSVQDVMAYLLTHENRIESKLKNVNSDGT-PPSANLMTQSHHTVESDSQKPNPSYQGN 280
+ S+ +V A LL HE RIE+ N+ T PS N+ T ++ + P Y+G
Sbjct: 134 ESLSLSEVGALLLAHEGRIET--YNITGGHTASPSVNVTTAPSQRKAENTSQSQPVYRG- 193
Query: 281 QNYNSRGRGRSNRGGRS-WNNRNKPQYQICFKFGHTAIKCYSLGGRFD-----QGRGVSQ 340
RGRGR+ RGGR W+N +P QIC GH A CY RFD + GVS+
Sbjct: 194 -----RGRGRNGRGGRKPWHNNGRPVCQICGIPGHVAEICYY---RFDKEFVPKSSGVSR 253
Query: 341 SNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNFSNLAVG 400
++ N P + +F T SE + WYP+ GA++H+TN+ NL+V
Sbjct: 254 TSQQQFNRSSPSYPPSAFAS---------TKSESASEEWWYPDSGASHHVTNDLGNLSVS 313
Query: 401 AEYSGANQMQVGNGTGLSISHYGYTSFS--SSNHIFHLKNLLHVPQITKNLISVSQFAKD 460
+EY+G +++QVGNG GLSIS+ G ++ + S+ F LKNLLHVP ITKNLISVS+FA D
Sbjct: 314 SEYTGGSKVQVGNGAGLSISNIGESNLNMFPSSRPFLLKNLLHVPLITKNLISVSKFAYD 373
Query: 461 NLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
N VYFEFHP FC VKD T +LLRG LH+GLYRF+L
Sbjct: 374 NHVYFEFHPSFCLVKDPATHVVLLRGTLHNGLYRFNL 389
BLAST of Lag0036910 vs. NCBI nr
Match:
RVW80632.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 241.9 bits (616), Expect = 1.1e-59
Identity = 150/366 (40.98%), Postives = 212/366 (57.92%), Query Frame = 0
Query: 140 RAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYE 199
RA++ + K++L +T+KG LS+++Y +I+ VD LA VG + +DHI I GL +YE
Sbjct: 121 RAKVTQFKTQLHNTKKGDLSISDYLLKIRNVVDLLALVGHKISVKDHIDAIFEGLPQDYE 180
Query: 200 SMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQS-----HHTV 259
+ + ++ + D +V+++ LL E+RIE +K + TP A+L+T + H
Sbjct: 181 TFIISVNSRLDPYTVEEIEVLLLAQESRIEKNIK-IADLSTPSLAHLITTNRNGSPHFNY 240
Query: 260 ESDSQKPN---PSYQGN------QNYNSRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAI 319
+ ++ N P++ GN N+ +GRGR RG SW NKPQ Q+C + GH +
Sbjct: 241 RASTRNSNFRPPTHSGNGMQHFRGNFTQQGRGRHGRG--SWKGNNKPQCQLCGRIGHVVM 300
Query: 320 KCYSLGGRFDQG-RGVSQSNNIAPN----NFHPQFGAGSFPHNSSPMTAMLTASELNQDN 379
+CY RFDQ G SQ P + H Q FP SS T +E+ QDN
Sbjct: 301 QCYY---RFDQSFTGPSQLQGNRPQGNMAHLHQQLSENFFPGTSS---VKPTTAEIIQDN 360
Query: 380 GWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSS---NHIFH 439
WYP+ GAT+HLT N +NL +++ ++++ VGNG GL I H G+TSFSSS +
Sbjct: 361 NWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLA 420
Query: 440 LKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFD- 481
LK LLHVP+ITKNL+SVS+FA DN V+FEFHP C VKD T +L+ G L GLY FD
Sbjct: 421 LKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDLSTRTVLMHGQLKGGLYVFDN 477
BLAST of Lag0036910 vs. NCBI nr
Match:
CAN74695.1 (hypothetical protein VITISV_024648 [Vitis vinifera])
HSP 1 Score: 241.9 bits (616), Expect = 1.1e-59
Identity = 150/366 (40.98%), Postives = 212/366 (57.92%), Query Frame = 0
Query: 140 RAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYE 199
RA++ + K++L +T+KG LS+++Y +I+ VD LA VG + +DHI I GL +YE
Sbjct: 121 RAKVTQFKTQLHNTKKGDLSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYE 180
Query: 200 SMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQS-----HHTV 259
+ + ++ + D +V+++ A LL E+RIE +K + TP A+L+T + H
Sbjct: 181 TFIISVNSRLDPYTVEEIEALLLAQESRIEKNIK-IADFSTPSLAHLITTNRNGSPHFNY 240
Query: 260 ESDSQKPN---PSYQGN------QNYNSRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAI 319
+ ++ N P++ GN N+ +GRGR RG SW NKPQ Q+C + GH +
Sbjct: 241 RASTRNSNFRPPTHSGNGMQHFRGNFTQQGRGRHGRG--SWKGNNKPQCQLCGRIGHVVM 300
Query: 320 KCYSLGGRFDQG-RGVSQSNNIAPN----NFHPQFGAGSFPHNSSPMTAMLTASELNQDN 379
+CY RFDQ G SQ P + H Q FP S T +E+ QDN
Sbjct: 301 QCYY---RFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPS---VKPTTAEIIQDN 360
Query: 380 GWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSS---NHIFH 439
WYP+ GAT+HLT N +NL +++ ++++ VGNG GL I H G+TSFSSS +
Sbjct: 361 NWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLA 420
Query: 440 LKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFD- 481
LK LLHVP+ITKNL+SVS+FA DN V+FEFHP C VKD T +L+ G L GLY FD
Sbjct: 421 LKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFDN 477
BLAST of Lag0036910 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 1.4e-28
Identity = 97/342 (28.36%), Postives = 171/342 (50.00%), Query Frame = 0
Query: 143 IMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYESMV 202
+ +L+++L+ KG+ ++++Y + D LA +GK +D ++ + +L L EY+ ++
Sbjct: 125 VTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVI 184
Query: 203 SALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQSHHTVESDSQKPN 262
+ ++ ++ LL HE++I L ++ P +AN ++ + T +++ N
Sbjct: 185 DQIAAKDTPPTLTEIHERLLNHESKI---LAVSSATVIPITANAVSHRNTTTTNNNNNGN 244
Query: 263 PSYQ---GNQNYNSRGRGRSNRGGRSWNNRNKP---QYQICFKFGHTAIKCYSLGGRFDQ 322
+ + N N NS+ +S+ NN++KP + QIC GH+A +C L
Sbjct: 245 RNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSS 304
Query: 323 GRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNF 382
+ P GS P++S N W + GAT+H+T++F
Sbjct: 305 VNSQQPPSPFTPWQPRANLALGS-PYSS---------------NNWLLDSGATHHITSDF 364
Query: 383 SNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSNHIFHLKNLLHVPQITKNLISVSQ 442
+NL++ Y+G + + V +G+ + ISH G TS S+ + +L N+L+VP I KNLISV +
Sbjct: 365 NNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYR 424
Query: 443 FAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDLS 479
N V EF P VKD TG LL+G D LY + ++
Sbjct: 425 LCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIA 447
BLAST of Lag0036910 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.6e-24
Identity = 93/312 (29.81%), Postives = 152/312 (48.72%), Query Frame = 0
Query: 172 DALAAVGKTVDTEDHIMYILNGLGSEYESMVSALTTSTDDQSVQDVMAYLLTHENRIESK 231
D LA +GK +D ++ + +L L +Y+ ++ + S+ ++ L+ NR ESK
Sbjct: 135 DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLI---NR-ESK 194
Query: 232 LKNVNS-DGTPPSANLMT-QSHHTVESDSQKPNPSYQGNQNYNSRGRGRSNRGGRSWNNR 291
L +NS + P +AN++T ++ +T + + + + N N S S+ G RS N +
Sbjct: 195 LLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQ 254
Query: 292 NKP---QYQICFKFGHTAIKCYSLGGRFDQGRGVSQSNNIAPNNFHPQFGAGSFPHNSSP 351
KP + QIC GH+A +C L +F QS + P
Sbjct: 255 PKPYLGRCQICSVQGHSAKRCPQL-HQFQSTTNQQQSTS---------------PFTPWQ 314
Query: 352 MTAMLTASELNQDNGWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGY 411
A L + N W + GAT+H+T++F+NL+ Y+G + + + +G+ + I+H G
Sbjct: 315 PRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGS 374
Query: 412 TSFSSSNHIFHLKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRG 471
S +S+ L +L+VP I KNLISV + N V EF P VKD TG LL+G
Sbjct: 375 ASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQG 426
Query: 472 ALHDGLYRFDLS 479
D LY + ++
Sbjct: 435 KTKDELYEWPIA 426
BLAST of Lag0036910 vs. ExPASy TrEMBL
Match:
A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)
HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 173/344 (50.29%), Postives = 232/344 (67.44%), Query Frame = 0
Query: 141 AQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYES 200
AQ M+ K+KL + +KGS+ L EYF +I +CVDALA++ K V ++DHI+YIL GLGS+Y+S
Sbjct: 137 AQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQS 196
Query: 201 MVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQ-SHHTVESDSQ 260
M+S ++ TD SVQ+VM+ LLT E++ ESKL S+ PS N++TQ + ES +
Sbjct: 197 MISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGAESYIR 256
Query: 261 KPNPSYQGNQNYN---SRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAIKCYSLGGRFDQ 320
+Y N +YN RG GRSNRG R NRNKPQ QIC K G++A +C F +
Sbjct: 257 TNQNNYHNNHSYNQRGGRGNGRSNRGRR--GNRNKPQCQICAKLGYSADRC------FFR 316
Query: 321 GRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNF 380
S S+ +PN+ + + + +N M+AM+ A +LN D+ WYP+ GATNHLT++
Sbjct: 317 YTPRSNSSGYSPNSHNTSY---TNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSL 376
Query: 381 SNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSN---HIFHLKNLLHVPQITKNLIS 440
SNL++G+EY G NQ+ NG+GL I+HYG SF+SS F L NLL VP ITKNLIS
Sbjct: 377 SNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLIS 436
Query: 441 VSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
VSQFAKDN V+FEFHP C VKD TGQ+LL+G L+DGLY+F +
Sbjct: 437 VSQFAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTI 466
BLAST of Lag0036910 vs. ExPASy TrEMBL
Match:
A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)
HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 173/344 (50.29%), Postives = 232/344 (67.44%), Query Frame = 0
Query: 141 AQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYES 200
AQ M+ K+KL + +KGS+ L EYF +I +CVDALA++ K V ++DHI+YIL GLGS+Y+S
Sbjct: 137 AQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQS 196
Query: 201 MVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQ-SHHTVESDSQ 260
M+S ++ TD SVQ+VM+ LLT E++ ESKL S+ PS N++TQ + ES +
Sbjct: 197 MISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGAESYIR 256
Query: 261 KPNPSYQGNQNYN---SRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAIKCYSLGGRFDQ 320
+Y N +YN RG GRSNRG R NRNKPQ QIC K G++A +C F +
Sbjct: 257 TNQNNYHNNHSYNQRGGRGNGRSNRGRR--GNRNKPQCQICAKLGYSADRC------FFR 316
Query: 321 GRGVSQSNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNF 380
S S+ +PN+ + + + +N M+AM+ A +LN D+ WYP+ GATNHLT++
Sbjct: 317 YTPRSNSSGYSPNSHNTSY---TNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSL 376
Query: 381 SNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSSN---HIFHLKNLLHVPQITKNLIS 440
SNL++G+EY G NQ+ NG+GL I+HYG SF+SS F L NLL VP ITKNLIS
Sbjct: 377 SNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLIS 436
Query: 441 VSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
VSQFAKDN V+FEFHP C VKD TGQ+LL+G L+DGLY+F +
Sbjct: 437 VSQFAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTI 466
BLAST of Lag0036910 vs. ExPASy TrEMBL
Match:
A0A2Z7AWA7 (Integrase catalytic domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_06348 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 1.4e-63
Identity = 165/397 (41.56%), Postives = 232/397 (58.44%), Query Frame = 0
Query: 101 SFVFYNNSDYLSIDGFLNHGKSNCRRSWKFG-KSDRQSWNR----------AQIMRLKSK 160
+FV +N D L + FL S +S G ++ Q W R A++M+ K +
Sbjct: 14 NFVTWNRQDQL-LFSFLLASMSESAQSQMIGCQTSSQLWTRVTQLFATRSKARVMQYKLQ 73
Query: 161 LQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYESMVSALTTST 220
LQ+ +KG+LS+ +Y ++K +D LAA G ++ +D I++IL G+G EYES+V +T+
Sbjct: 74 LQTLKKGNLSMKDYLGKMKGYIDILAACGNSIPEDDQILHILGGVGPEYESVVVHVTSRV 133
Query: 221 DDQSVQDVMAYLLTHENRIESKLKNVNSDGT-PPSANLMTQSHHTVESDSQKPNPSYQGN 280
+ S+ +V A LL HE RIE+ N+ T PS N+ T ++ + P Y+G
Sbjct: 134 ESLSLSEVGALLLAHEGRIET--YNITGGHTASPSVNVTTAPSQRKAENTSQSQPVYRG- 193
Query: 281 QNYNSRGRGRSNRGGRS-WNNRNKPQYQICFKFGHTAIKCYSLGGRFD-----QGRGVSQ 340
RGRGR+ RGGR W+N +P QIC GH A CY RFD + GVS+
Sbjct: 194 -----RGRGRNGRGGRKPWHNNGRPVCQICGIPGHVAEICYY---RFDKEFVPKSSGVSR 253
Query: 341 SNNIAPNNFHPQFGAGSFPHNSSPMTAMLTASELNQDNGWYPNLGATNHLTNNFSNLAVG 400
++ N P + +F T SE + WYP+ GA++H+TN+ NL+V
Sbjct: 254 TSQQQFNRSSPSYPPSAFAS---------TKSESASEEWWYPDSGASHHVTNDLGNLSVS 313
Query: 401 AEYSGANQMQVGNGTGLSISHYGYTSFS--SSNHIFHLKNLLHVPQITKNLISVSQFAKD 460
+EY+G +++QVGNG GLSIS+ G ++ + S+ F LKNLLHVP ITKNLISVS+FA D
Sbjct: 314 SEYTGGSKVQVGNGAGLSISNIGESNLNMFPSSRPFLLKNLLHVPLITKNLISVSKFAYD 373
Query: 461 NLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFDL 478
N VYFEFHP FC VKD T +LLRG LH+GLYRF+L
Sbjct: 374 NHVYFEFHPSFCLVKDPATHVVLLRGTLHNGLYRFNL 389
BLAST of Lag0036910 vs. ExPASy TrEMBL
Match:
A0A438H844 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3152 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 5.5e-60
Identity = 150/366 (40.98%), Postives = 212/366 (57.92%), Query Frame = 0
Query: 140 RAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYE 199
RA++ + K++L +T+KG LS+++Y +I+ VD LA VG + +DHI I GL +YE
Sbjct: 121 RAKVTQFKTQLHNTKKGDLSISDYLLKIRNVVDLLALVGHKISVKDHIDAIFEGLPQDYE 180
Query: 200 SMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQS-----HHTV 259
+ + ++ + D +V+++ LL E+RIE +K + TP A+L+T + H
Sbjct: 181 TFIISVNSRLDPYTVEEIEVLLLAQESRIEKNIK-IADLSTPSLAHLITTNRNGSPHFNY 240
Query: 260 ESDSQKPN---PSYQGN------QNYNSRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAI 319
+ ++ N P++ GN N+ +GRGR RG SW NKPQ Q+C + GH +
Sbjct: 241 RASTRNSNFRPPTHSGNGMQHFRGNFTQQGRGRHGRG--SWKGNNKPQCQLCGRIGHVVM 300
Query: 320 KCYSLGGRFDQG-RGVSQSNNIAPN----NFHPQFGAGSFPHNSSPMTAMLTASELNQDN 379
+CY RFDQ G SQ P + H Q FP SS T +E+ QDN
Sbjct: 301 QCYY---RFDQSFTGPSQLQGNRPQGNMAHLHQQLSENFFPGTSS---VKPTTAEIIQDN 360
Query: 380 GWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSS---NHIFH 439
WYP+ GAT+HLT N +NL +++ ++++ VGNG GL I H G+TSFSSS +
Sbjct: 361 NWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLA 420
Query: 440 LKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFD- 481
LK LLHVP+ITKNL+SVS+FA DN V+FEFHP C VKD T +L+ G L GLY FD
Sbjct: 421 LKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDLSTRTVLMHGQLKGGLYVFDN 477
BLAST of Lag0036910 vs. ExPASy TrEMBL
Match:
A5BK17 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_024648 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 5.5e-60
Identity = 150/366 (40.98%), Postives = 212/366 (57.92%), Query Frame = 0
Query: 140 RAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTVDTEDHIMYILNGLGSEYE 199
RA++ + K++L +T+KG LS+++Y +I+ VD LA VG + +DHI I GL +YE
Sbjct: 121 RAKVTQFKTQLHNTKKGDLSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYE 180
Query: 200 SMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTPPSANLMTQS-----HHTV 259
+ + ++ + D +V+++ A LL E+RIE +K + TP A+L+T + H
Sbjct: 181 TFIISVNSRLDPYTVEEIEALLLAQESRIEKNIK-IADFSTPSLAHLITTNRNGSPHFNY 240
Query: 260 ESDSQKPN---PSYQGN------QNYNSRGRGRSNRGGRSWNNRNKPQYQICFKFGHTAI 319
+ ++ N P++ GN N+ +GRGR RG SW NKPQ Q+C + GH +
Sbjct: 241 RASTRNSNFRPPTHSGNGMQHFRGNFTQQGRGRHGRG--SWKGNNKPQCQLCGRIGHVVM 300
Query: 320 KCYSLGGRFDQG-RGVSQSNNIAPN----NFHPQFGAGSFPHNSSPMTAMLTASELNQDN 379
+CY RFDQ G SQ P + H Q FP S T +E+ QDN
Sbjct: 301 QCYY---RFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPS---VKPTTAEIIQDN 360
Query: 380 GWYPNLGATNHLTNNFSNLAVGAEYSGANQMQVGNGTGLSISHYGYTSFSSS---NHIFH 439
WYP+ GAT+HLT N +NL +++ ++++ VGNG GL I H G+TSFSSS +
Sbjct: 361 NWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLA 420
Query: 440 LKNLLHVPQITKNLISVSQFAKDNLVYFEFHPEFCCVKDSRTGQILLRGALHDGLYRFD- 481
LK LLHVP+ITKNL+SVS+FA DN V+FEFHP C VKD T +L+ G L GLY FD
Sbjct: 421 LKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFDN 477
BLAST of Lag0036910 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 53.1 bits (126), Expect = 7.0e-07
Identity = 50/188 (26.60%), Postives = 89/188 (47.34%), Query Frame = 0
Query: 122 SNCRRSWKFGKSDRQSWNRAQIMRLKSKLQSTQKGSLSLNEYFAQIKKCVDALAAVGKTV 181
S R W K+ ++ A+ +RL S+L++ G + + +Y+ ++KK D+L V V
Sbjct: 93 STSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPV 152
Query: 182 DTEDHIMYILNGLGSEYESMVSALTTSTDDQSVQDVMAYLLTHENRIESKLKNVNSDGTP 241
+ +MY+LNGL +++++++ + S D L E+R++ +K P
Sbjct: 153 TDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIK-------P 212
Query: 242 PSANLMTQSHHTVESDSQKP---NPSYQGNQNYNSRGRGRSN-----RGGR-------SW 295
++ S TV + S+ P N G RGRGR N RGGR ++
Sbjct: 213 NPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNNIFRGRGGRFSYYNMPTF 272
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0048297.1 | 2.7e-77 | 50.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
TYK10642.1 | 2.7e-77 | 50.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KZV26181.1 | 2.9e-63 | 41.56 | hypothetical protein F511_06348 [Dorcoceras hygrometricum] | [more] |
RVW80632.1 | 1.1e-59 | 40.98 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
CAN74695.1 | 1.1e-59 | 40.98 | hypothetical protein VITISV_024648 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 1.4e-28 | 28.36 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 3.6e-24 | 29.81 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7U233 | 1.3e-77 | 50.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3CH97 | 1.3e-77 | 50.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A2Z7AWA7 | 1.4e-63 | 41.56 | Integrase catalytic domain-containing protein OS=Dorcoceras hygrometricum OX=472... | [more] |
A0A438H844 | 5.5e-60 | 40.98 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A5BK17 | 5.5e-60 | 40.98 | Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... | [more] |
Match Name | E-value | Identity | Description | |
AT1G34070.1 | 7.0e-07 | 26.60 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |