Lag0036799 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036799
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr2: 1224002 .. 1226789 (-)
RNA-Seq Expression	Lag0036799
Synteny	Lag0036799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGCTGAAGGTTTCGGATGCCAATATGGTTATTTATGTTCACCCTTCGAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTTGGCGCTATGCTTCTGAAGTAAGTCGAACTTGTTTTAGGCTTTGAACAGTTGTCGAGTCTAATGTCTTGCAATCACAATGTTTTCTTGTTATTGATAGTGTTGCTTTGTTGGTATTGTGTCGTTGAACATCTCGACTGGGGTAATATTTGGCAATGGCGGAGTTGGACTAGTGCGAACTTAAATTTAGCCTCAATTTAACTTAGAATTAGACGAGTTTGGTTTAATTCCGCATTTTTATTTAGTTGGGGGTTTTTGCTTTCTTGGCATGCTATTTTGTATTGAAGAAATAAACACCAGGTCTGTGCTGCTGTTTGTGAACTCAGAATGTGAGTTTCTATAGTTTTAGATACTATAACTTTTCAAGTTCTGGGGGGACAAATTTAGGGAATATCTTATATTTTACATTCACGTTGAACTCAAAGGCACGAAGTTTAGACTTCTCGTGATTTTTATTGCTGCTTCTTTTGCTCCATTTAATCAACATTGAAGTTCATTTTTGTGGTAGATGCCTGTGGACTTGTATCATTTACTGCATTTCTTTTTGTATTGTGTTTCTCGTGTAGATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCCAAAATTCTATCTGGAGTTCATCCCTATTTTGGCGTGACGATTAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTTTTTTTTTTATGATTCTCATCATGCGTGGAGGAGTTTCATTTGAGATTCAAAGTGTTTCCATTGTTTTCATTAGGAAATTAACGCATCTACAACTAAGCTGTCAAGCAACAAACTCACATTTTAACATTGTTAGGATTCTTTGATCAATTATGATGGTAAATATATTGAATTAACAAATACGAGACAAATTCTTTTATTCCTTTTTACCATGTTTTGCTGATAGTTTTGTTGTCACTCCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCCATACATGTTATTGTCTTAGGTTTTGCATCTGCTGTAATAACCGATGAAGACATTCGTGATGAATTCAAGCATAGAACAGTATGTTTTGTGCATTGTACTTGAAAATTTGTAACTTTCTTTTTGTTACATGTATAAGAAGGAAGTTCTTTTACCTTGTCCTGATTGCATTATGCATTTATTTTGACATAGAAACATGGGGAAGAAATGTTTGTCAGCAGAGCTCATAAAAACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGGTTTGATTTTTCTTTTCTTTTCCTTTTTCTTCATTATAATTACACTTAATTCTGTAATGTTTACGTGGAAAGTTGTTCACATGGAGTTTTCATCCAAATAATTGAGGGCTGGAACACGAAATTCATATCTGATGGATGCCCTGCCGTATTTATTAATATTTGCTGGTTCTTGTTTTTCATCTTCAGTAATTTAAATATCTTGACAATGTTACTATTGACTTAATTCAACCTTGCAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTGGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCAATTGAAGGTTCAGAAAGTAATAGGTGATTAGCAGATACTGAATTCCGGGTGGTTTTGAGCTCTAATCTCCAAATCTACGATTCTGATATTTTTCTCCAAATTTGTAGGAGTAAAAAGAAGATGAGAGATAACGAAGGAGAATCGTTGTTGCAGGACAGTGTTGCCACTGATGGTAATGCAGTTATCTCGAACAATGACCATCAGTCGAAAACCAAAAAACAAAAAACTACTAGAATATCTTGAAGACTGCTAATTGTCATACAACAACATGGATCATTTTCGTATCAGGTAATTTTACCTCCCTCAGTAGAGTAGCTCCCAATTCATGCCTAAAAGCTACATTAGCCAAAAATTTACCTGAAAAGTACATTTGAATTCTATTTGTATATAGGGTGATGATGATTTAAAGCAGAGATCCTCATTGTTTTCCTATTCTAAGAAATGCTTGGGAGAGAGATGCACCTTTCACTTGGGAATGTCACCTGAACTTTGATAATGACATAACATTATATCAGGGTGTGGATAGATGCAGCTTCCCATTTTTGTAACTGTTATGAAGAAATAGCCCAAATGCCTGTATCATGGGCTTAGGCCCAATAGACATTGGTGAGTGAATGATTTGTTTTCCAGCCCAATCTTGAGTCCAATATGCAGTAGGTAAGGATGGGGATGACAGATGTCATCAACCTAGACTTTCTGAAAATTGTCTGAGATTTGGACCTTATATTTCTTAATTTCATTCAAAATCACGCACACACAAACACAACACAAGACAACACCACACCGTTGGTTTGTCAATCATTATAATGAGGATATGATTTTGGTTTTGCAAGTACATTCGATTTGCACCGTTGACTCATGATTGCCACTATATCTCTCATCTCCATTATGGGTTCTTATAGAAAGCTGCAAATAATTCACATCATTTTCTTCATCATTATAAGGTATGGGGTGCTCTGTCCAAATCAACCCGCTGCTGGATGAGATGAATTACAAGAGAGAAGAATCGGTTCTCAGAAATGGGTTTTCCAAGTTGTTGAACCGGGTTCATTCCAACCAAATCCCATGTGAATATGCGATCTATGGCATTTGTTTAATCAGATAA

mRNA sequence

ATGGAGGGGCTGAAGGTTTCGGATGCCAATATGGTTATTTATGTTCACCCTTCGAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTTGGCGCTATGCTTCTGAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCCAAAATTCTATCTGGAGTTCATCCCTATTTTGGCGTGACGATTAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCCATACATGTTATTGTCTTAGGTTTTGCATCTGCTGTAATAACCGATGAAGACATTCGTGATGAATTCAAGCATAGAACAAAACATGGGGAAGAAATGTTTGTCAGCAGAGCTCATAAAAACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTGGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCAATTGAAGGTTCAGAAAGTAATAGGAGTAAAAAGAAGATGAGAGATAACGAAGGAGAATCGTTGTTGCAGGACAGTGTTGCCACTGATGGTATGGGGTGCTCTGTCCAAATCAACCCGCTGCTGGATGAGATGAATTACAAGAGAGAAGAATCGGTTCTCAGAAATGGGTTTTCCAAGTTGTTGAACCGGGTTCATTCCAACCAAATCCCATGTGAATATGCGATCTATGGCATTTGTTTAATCAGATAA

Coding sequence (CDS)

ATGGAGGGGCTGAAGGTTTCGGATGCCAATATGGTTATTTATGTTCACCCTTCGAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTTGGCGCTATGCTTCTGAAATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCCAAAATTCTATCTGGAGTTCATCCCTATTTTGGCGTGACGATTAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCCATACATGTTATTGTCTTAGGTTTTGCATCTGCTGTAATAACCGATGAAGACATTCGTGATGAATTCAAGCATAGAACAAAACATGGGGAAGAAATGTTTGTCAGCAGAGCTCATAAAAACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTGGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCAATTGAAGGTTCAGAAAGTAATAGGAGTAAAAAGAAGATGAGAGATAACGAAGGAGAATCGTTGTTGCAGGACAGTGTTGCCACTGATGGTATGGGGTGCTCTGTCCAAATCAACCCGCTGCTGGATGAGATGAATTACAAGAGAGAAGAATCGGTTCTCAGAAATGGGTTTTCCAAGTTGTTGAACCGGGTTCATTCCAACCAAATCCCATGTGAATATGCGATCTATGGCATTTGTTTAATCAGATAA

Protein sequence

MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGESLLQDSVATDGMGCSVQINPLLDEMNYKREESVLRNGFSKLLNRVHSNQIPCEYAIYGICLIR

Homology

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BLAST of Lag0036799 vs. NCBI nr
Match: XP_022982461.1 (uncharacterized protein LOC111481277 isoform X1 [Cucurbita maxima] >XP_022982462.1 uncharacterized protein LOC111481277 isoform X1 [Cucurbita maxima])

HSP 1 Score: 379.0 bits (972), Expect = 3.3e-101
Identity = 195/209 (93.30%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAN+VIYVHPSKSKKVSQAVLR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS +NRS+KKMRDN+ ESLLQDSVATD
Sbjct: 181 VEGSVTNRSRKKMRDNDRESLLQDSVATD 209

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BLAST of Lag0036799 vs. NCBI nr
Match: XP_022148351.1 (uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncharacterized protein LOC111016757 [Momordica charantia])

HSP 1 Score: 378.6 bits (971), Expect = 4.3e-101
Identity = 193/209 (92.34%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DKSAKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           IEGS ++R +KK RDNEGESLLQDSVATD
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATD 209

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BLAST of Lag0036799 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 7.3e-101
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS S  SKKKMR+NEG  +LQD+V TD
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTD 209

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BLAST of Lag0036799 vs. NCBI nr
Match: XP_023523351.1 (uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo] >XP_023523353.1 uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 1.2e-100
Identity = 195/209 (93.30%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAN+VIYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRA+K+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS +NRS+KKMRD + ESLLQDSVATD
Sbjct: 181 VEGSVTNRSRKKMRDTDRESLLQDSVATD 209

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BLAST of Lag0036799 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida])

HSP 1 Score: 374.8 bits (961), Expect = 6.1e-100
Identity = 191/209 (91.39%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           M+GLKVSDANMV+YVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKI
Sbjct: 1   MDGLKVSDANMVVYVHPSKSKKVSQAVLRVLGAMLLKFDEKFEGVLLAYEAKIIDKIAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNML+EGKVVKLRQESIHVIVLGFASAVIT+EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLVEGKVVKLRQESIHVIVLGFASAVITNEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHI+GSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHIAGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EG+ ++ SKKKMR+NEGE +LQDSVAT+
Sbjct: 181 VEGTVTSSSKKKMRENEGEVMLQDSVATE 209

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BLAST of Lag0036799 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-06
Identity = 39/163 (23.93%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 10  NMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYF 69
           ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++KSAK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  GVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDI-RDEFKHRTKHG 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  + I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVSRAHKNHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS 169
           EE    + +  ++++ G  + F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

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BLAST of Lag0036799 vs. ExPASy TrEMBL
Match: A0A6J1IWP0 (uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.6e-101
Identity = 195/209 (93.30%), Postives = 205/209 (98.09%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAN+VIYVHPSKSKKVSQAVLR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS +NRS+KKMRDN+ ESLLQDSVATD
Sbjct: 181 VEGSVTNRSRKKMRDNDRESLLQDSVATD 209

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BLAST of Lag0036799 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.1e-101
Identity = 193/209 (92.34%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DKSAKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           IEGS ++R +KK RDNEGESLLQDSVATD
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATD 209

[Close]

BLAST of Lag0036799 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.5e-101
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS S  SKKKMR+NEG  +LQD+V TD
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTD 209

[Close]

BLAST of Lag0036799 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.5e-101
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS S  SKKKMR+NEG  +LQD+V TD
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTD 209

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BLAST of Lag0036799 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 5.1e-100
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSESNRSKKKMRDNEGESLLQDSVATD 210
           +EGS S  SKKKMR+NEG  +LQD+V TD
Sbjct: 181 VEGSVS-MSKKKMRENEGGVMLQDTVGTD 208

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BLAST of Lag0036799 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-62
Identity = 109/194 (56.19%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 IEGSESNRSKKKMR 195
            E   ++R  K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

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BLAST of Lag0036799 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-62
Identity = 109/194 (56.19%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKI 60
           MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 IEGSESNRSKKKMR 195
            E   ++R  K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

The following BLAST results are available for this feature:

BLAST of Lag0036799 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982461.1	3.3e-101	93.30	uncharacterized protein LOC111481277 isoform X1 [Cucurbita maxima] >XP_022982462...	[more]
XP_022148351.1	4.3e-101	92.34	uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncha...	[more]
XP_008466499.1	7.3e-101	93.30	PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_023523351.1	1.2e-100	93.30	uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo] >XP_023523353....	[more]
XP_038898978.1	6.1e-100	91.39	uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]	[more]

BLAST of Lag0036799 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	2.4e-06	23.93	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Lag0036799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWP0	1.6e-101	93.30	uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1D5Y9	2.1e-101	92.34	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A1S4E5I5	3.5e-101	93.30	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	3.5e-101	93.30	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A1S3CRF8	5.1e-100	93.30	uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lag0036799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	4.1e-62	56.19	DNA-directed RNA polymerases	[more]
AT1G75670.2	4.1e-62	56.19	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 1.2E-6 score: 30.3
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..211 e-value: 3.5E-6 score: 29.3
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..199
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036799.1	Lag0036799.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity