Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGGTCGCCATGAATATCCTCCTTTGGAATGTTCGGGGTTTGGGGTCGCCTCGTGCATTCCGTCGATTGTACAAGCTGGTACAACAACATAGACCTCACATGGTGTTTCTGTCAGAGACCAAGGTTCACTCGTCACGTTTTGAGCTTCTCAAGGTGAGATTGGGGTTTGTTAATGTTTTAGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGTTAGTGGGTGGTGATTTCAATGCCATTTTATCCCACCAGGAGAAGGAAGGTGGCAGGGCCAAGGCAGAGGCTGAATTGTCAGGTTTCCAGGGTGCCATAGATGACTCTGAGCTACTTGACTTGGGTTTTAGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG
mRNA sequence
ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG
Coding sequence (CDS)
ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG
Protein sequence
MAVDSVVVVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVDGGVNPWRFSGIYGFPQAELKGDLVAIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFSR
Homology
BLAST of Lag0036574 vs. NCBI nr
Match:
TXG63522.1 (hypothetical protein EZV62_010516 [Acer yangbiense])
HSP 1 Score: 90.1 bits (222), Expect = 2.4e-14
Identity = 71/234 (30.34%), Postives = 99/234 (42.31%), Query Frame = 0
Query: 23 GKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSI 82
GK WKR ARES T A LT+GG ++V ++ + RV ++ ++ I
Sbjct: 4 GKKWKRMARESQRKTT---AGLTIGGRVQEVSKRKVIFEDLVSDRVSKKGKLGSHRAGKI 63
Query: 83 SAVADLQPR-RVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV--DGGVNPWRFSGIY 142
V + + V S GRSGG LLW + +LSYS HID + D G+ WRFSGIY
Sbjct: 64 REVLEYEGGFGVDSSGRSGGLLLLWKNHCKVLVLSYSAGHIDARIHEDNGLQ-WRFSGIY 123
Query: 143 GFPQAE-------LKGDLVAIEALAW---------------------ESRDTV------- 202
G P L L ++ L W RD +
Sbjct: 124 GDPNPSNRMNTWTLMRRLKEVDNLPWVCGGDFNELLSMSEKLGGSEKAIRDIIRFRQVVD 183
Query: 203 ----------GAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFS 209
G FTW N R G + V ER+DR L++ W+ ++ + HL F+
Sbjct: 184 DCEFIDLGFSGPKFTWNNMREGRDNVQERLDRILASTNWRNMYQQITIEHLGFN 233
BLAST of Lag0036574 vs. NCBI nr
Match:
PKA50374.1 (hypothetical protein AXF42_Ash013463 [Apostasia shenzhenica])
HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13
Identity = 56/160 (35.00%), Postives = 72/160 (45.00%), Query Frame = 0
Query: 93 VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVDGGVN--PWRFSGIYG---------- 152
VS VGRSGG A+LWN + +LLS+S +HID V N WRF+G YG
Sbjct: 59 VSCVGRSGGLAMLWNDDFDVTLLSFSCSHIDVSVHHLSNAVAWRFTGFYGESVESRKYLS 118
Query: 153 ------------------------FPQAELKGDLVAIEALAWESRDT-----------VG 206
Q+E +G L E R+ +G
Sbjct: 119 WQLLGKLAERYQGPWLCAGDFNEVLYQSEKQGGLPRDERKTIAFREVLNKCQLIDMGFIG 178
BLAST of Lag0036574 vs. NCBI nr
Match:
XP_028075737.1 (uncharacterized protein LOC114277953 [Camellia sinensis])
HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13
Identity = 52/160 (32.50%), Postives = 69/160 (43.12%), Query Frame = 0
Query: 93 VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV--DGGVNPWRFSGIYGFPQAELKGD- 152
V VG SGG ALLW E++ + S+S H+D + + GV W F+G YG P A L+ D
Sbjct: 59 VDRVGLSGGLALLWVGEIQLQIKSFSRGHVDSIILSESGVASWCFTGFYGNPIASLRSDS 118
Query: 153 ------------------------LVAIEALAWESRDT--------------------VG 206
L A E +R G
Sbjct: 119 WELLRRLQDQMHLPWLCAGDFNEILYAHEKSGMAARSQRQMDGFRQVLSDCDLADLGFEG 178
BLAST of Lag0036574 vs. NCBI nr
Match:
KAF4372682.1 (hypothetical protein F8388_000849, partial [Cannabis sativa])
HSP 1 Score: 86.3 bits (212), Expect = 3.5e-13
Identity = 74/233 (31.76%), Postives = 100/233 (42.92%), Query Frame = 0
Query: 34 LADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDM-----TVSISAVADL 93
+A+ N +P GG KRK+D D + + KK R+EE+++ P + T A+
Sbjct: 502 VANAINKVSPKVGGGGKRKMDVD-VHYENVKKGRLEEQSKYSPSLVFLSETKLYGGWAEG 561
Query: 94 QPRRVS--------SVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD-GGVNPWRFSGIY 153
R++S VG+SGG LLWN + S+ S+S HID V G+N WRF+G Y
Sbjct: 562 IRRQISFSNSFHVDCVGKSGGLLLLWNDDWEVSVKSFSVGHIDALVKCPGLNVWRFTGFY 621
Query: 154 GFPQA-----------ELKG---------------------------DLVAIEAL--AWE 208
G P+A LKG L AI A +
Sbjct: 622 GNPKASSRINSWQLLCRLKGLFDLPWICGGDFNEVLSINEKKGGVDRSLSAISDFQQALD 681
BLAST of Lag0036574 vs. NCBI nr
Match:
PWA83198.1 (hypothetical protein CTI12_AA170930 [Artemisia annua])
HSP 1 Score: 86.3 bits (212), Expect = 3.5e-13
Identity = 59/183 (32.24%), Postives = 87/183 (47.54%), Query Frame = 0
Query: 27 KRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSISAVA 86
K + ++ ADV N P + R+ + GK++ E +N D+ +
Sbjct: 22 KPDSTKAQADVENTNQPKSWKRRTREETHTRSISSVGKRSLEELDNEDQMDVDIV----- 81
Query: 87 DLQPRR---VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV-DGGVNPWRFSGIYGFP 146
+PR V S+GR+GG L W E ++ ++S NHID V D N WR +GIYG+P
Sbjct: 82 -KKPRELLVVDSIGRAGGLLLFWKKECDLTIRTFSQNHIDFVVKDENGNMWRGTGIYGWP 141
Query: 147 QAE-------LKGDLVAIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQE 199
+ + L L + AW+ T G TW NGR G V +R+DR L+N W +
Sbjct: 142 RRQDKHRTWALMRSLRTNQDQAWD-MTTTGVKLTWSNGRRGNANVKKRLDRFLTNSHWFD 197
BLAST of Lag0036574 vs. ExPASy TrEMBL
Match:
A0A803L8S1 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 2.8e-16
Identity = 76/248 (30.65%), Postives = 103/248 (41.53%), Query Frame = 0
Query: 8 VVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTR 67
+ +G E GK + KGWKR +RE +++ + + G KR+ DQ + G
Sbjct: 192 ITEGEERG-SGKIFTRKGWKRNSREG---DHSMEGDVKIAGEKRRT-RDQDGSEDG---- 251
Query: 68 VEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD 127
+V D R RSGG ALLW + S+ S+S NHID W+
Sbjct: 252 ----------------SVLDDDNDRGEGRKRSGGLALLWKNNLDVSIKSFSQNHIDAWIS 311
Query: 128 GGVN-PWRFSGIYGFPQAE-------LKGDLVAIEALAW--------------------- 187
V+ WRF+GIYGFP+ E L L++ A W
Sbjct: 312 SAVHGGWRFTGIYGFPEDENKHKTGVLLKSLMSTVAEPWLVGGDFNLMLLSCEKQGGRDF 371
Query: 188 --ESRDT---------------VGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHE 210
E D +G FTW N R G E V E++DR L+N AW+E FP
Sbjct: 372 NNEEADVLRDAVQFCQLLDLGYIGHNFTWTNNRGGIENVQEQLDRYLANHAWKESFPGSF 414
BLAST of Lag0036574 vs. ExPASy TrEMBL
Match:
A0A803LCM9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 68/244 (27.87%), Postives = 98/244 (40.16%), Query Frame = 0
Query: 8 VVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTR 67
V G E G +GKGWKR +R+ ++ + + G KR +D+ +
Sbjct: 120 VSSGTEEAMKGDGKAGKGWKRVSRDM---DHSMSTGVVVLGEKRSLDNSMEESEAVMTVS 179
Query: 68 VEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD 127
+E+E R + ++ + R GG ALLWN + ++ S+S NHID V
Sbjct: 180 IEKEKRRRVQVPNAVKVASPTNRALGEGRRRRGGLALLWNNSIDVNIRSFSLNHIDARVR 239
Query: 128 G-GVNPWRFSGIYGFPQAELK---------------------GDLV-------------- 187
+ WRFSGIYG P E K GDL+
Sbjct: 240 SITQDEWRFSGIYGHPDEENKYKIGQLLISLKGGTDTPWLCGGDLILMLHSGEKQGGRVF 299
Query: 188 ----------AIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHE 206
+ E +G FTW N R GEE + ER+DR L+N W++ F
Sbjct: 300 DMEEAEILRDVVGVCELEDLGFIGHDFTWSNNRGGEESIQERLDRFLANRTWRDAFQGSF 359
BLAST of Lag0036574 vs. ExPASy TrEMBL
Match:
A0A2N9H567 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34870 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 6.8e-15
Identity = 71/237 (29.96%), Postives = 100/237 (42.19%), Query Frame = 0
Query: 20 NVSGKGWKRRARESLADVTNLQAPL-TLGGSKR-KVDSDQLAGQ---GGKKTRVEEENRV 79
N WK+RAR + + + + P+ T G SKR +V D + G KK E+E V
Sbjct: 385 NTKQSTWKKRARHTPSAILDHNYPMETKGVSKRTRVSEDGVDPSDTIGNKKRNTEKEVSV 444
Query: 80 --------HPDMTVSISAVADLQPRRVSS---------------VGRSGGPALLWNPEVR 139
H D V L+ + V S VG GG ALLW EV
Sbjct: 445 RELREVVKHEDPKVVFLMETRLELKNVESLRVKLGMQSSMGVERVGTGGGLALLWRDEVH 504
Query: 140 FSLLSYSPNHIDGWVD-GGVNPWRFSGIYGFPQAELKGDLVAIEALAWESRDTV------ 199
+ S+S HID + G W F+G YG P+ + D + + +A+ + T
Sbjct: 505 IVVHSHSIAHIDITIRISGHRDWHFTGFYGNPETSKRDDFLDVYFVAFSAMMTCHGCFRR 564
Query: 200 -------------GAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFS 209
G FTW NGR G + V+ER+DR W+ LFP ++ H+ FS
Sbjct: 565 ALSDCALADMGFQGNKFTWWNGRYGTDCVYERLDRGCCTTDWKTLFPNAQIRHVPFS 621
BLAST of Lag0036574 vs. ExPASy TrEMBL
Match:
A0A803LHG7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 8.9e-15
Identity = 70/244 (28.69%), Postives = 102/244 (41.80%), Query Frame = 0
Query: 17 GGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKV-----DSDQLAGQGGKKTRVEEE 76
GGK + K WKR R+ ++ N + + G KR+V +D L G + +
Sbjct: 269 GGKEGTSKQWKRFNRDGDHNMVN---NINIAGEKRRVREGGIGADLLGISGEETSNKRRT 328
Query: 77 NRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV-DGGV 136
D S + A + RR RSGG A+LW + +++S+S NHID WV + G
Sbjct: 329 IEAETDKVASPTQWALGEGRR-----RSGGLAMLWKGSMDVTVMSFSLNHIDVWVKEDGQ 388
Query: 137 NPWRFSGIYGFPQAE-------LKGDLVAIEALAW----------------ESRD----- 196
+ WRF+G YG + E L L + W RD
Sbjct: 389 DAWRFTGFYGHLEDENKHLTGALMKSLTGVHGQPWLCGGDFNLMLTSNEKKGGRDFDNVE 448
Query: 197 -----------------TVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHL 210
+G FTW N R G+E V ER+D+ +N+AW++ FP +THL
Sbjct: 449 AEILREAVNFCELVDMGFIGHDFTWTNNRGGKENVQERLDKYFANIAWKDCFPGSFVTHL 504
BLAST of Lag0036574 vs. ExPASy TrEMBL
Match:
A0A803M8Y9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 56/163 (34.36%), Postives = 73/163 (44.79%), Query Frame = 0
Query: 93 VSSVG----RSGGPALLWNPEVRFSLLSYSPNHIDGWVD-GGVNPWRFSGIYGFPQAELK 152
VS VG RSGG ALLW + ++ SYS NHID WV WRF+G+YGFP+ E K
Sbjct: 16 VSCVGEGRKRSGGLALLWKDTIDVTIKSYSQNHIDSWVKFPKKEGWRFTGVYGFPEEENK 75
Query: 153 ---GDLV------------------------------------------AIEALAWESRD 206
G L+ A+ + E
Sbjct: 76 HKTGTLLENLGGSCDTPWVCGGDFNLMLISSEKQGGNDFRLDEADIFRGAVASCELEDLG 135
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TXG63522.1 | 2.4e-14 | 30.34 | hypothetical protein EZV62_010516 [Acer yangbiense] | [more] |
PKA50374.1 | 2.7e-13 | 35.00 | hypothetical protein AXF42_Ash013463 [Apostasia shenzhenica] | [more] |
XP_028075737.1 | 2.7e-13 | 32.50 | uncharacterized protein LOC114277953 [Camellia sinensis] | [more] |
KAF4372682.1 | 3.5e-13 | 31.76 | hypothetical protein F8388_000849, partial [Cannabis sativa] | [more] |
PWA83198.1 | 3.5e-13 | 32.24 | hypothetical protein CTI12_AA170930 [Artemisia annua] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803L8S1 | 2.8e-16 | 30.65 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
A0A803LCM9 | 1.8e-15 | 27.87 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
A0A2N9H567 | 6.8e-15 | 29.96 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A803LHG7 | 8.9e-15 | 28.69 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
A0A803M8Y9 | 2.0e-14 | 34.36 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |