Lag0036574 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036574
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 48732914 .. 48733853 (+)
RNA-Seq ExpressionLag0036574
SyntenyLag0036574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGGTCGCCATGAATATCCTCCTTTGGAATGTTCGGGGTTTGGGGTCGCCTCGTGCATTCCGTCGATTGTACAAGCTGGTACAACAACATAGACCTCACATGGTGTTTCTGTCAGAGACCAAGGTTCACTCGTCACGTTTTGAGCTTCTCAAGGTGAGATTGGGGTTTGTTAATGTTTTAGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGTTAGTGGGTGGTGATTTCAATGCCATTTTATCCCACCAGGAGAAGGAAGGTGGCAGGGCCAAGGCAGAGGCTGAATTGTCAGGTTTCCAGGGTGCCATAGATGACTCTGAGCTACTTGACTTGGGTTTTAGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG

mRNA sequence

ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG

Coding sequence (CDS)

ATGGCAGTGGATAGTGTGGTAGTGGTGCAGGGTAGGGAGGGAGATAAGGGTGGGAAGAATGTCAGTGGCAAAGGGTGGAAGAGGCGTGCAAGAGAGAGTTTAGCAGATGTCACAAACTTACAGGCACCTTTGACTCTGGGTGGGAGTAAGCGGAAGGTTGATTCAGATCAGTTGGCCGGTCAGGGCGGAAAGAAGACTAGAGTGGAGGAGGAAAACAGGGTCCATCCAGATATGACTGTTTCGATTTCAGCAGTGGCTGACCTTCAGCCCCGCCGTGTGAGCAGTGTTGGGAGAAGTGGGGGTCCAGCGTTGCTGTGGAACCCTGAGGTTCGGTTTAGTCTTCTGTCATACTCCCCCAATCACATAGATGGGTGGGTGGACGGAGGGGTGAACCCGTGGCGGTTTTCTGGGATTTATGGGTTTCCTCAAGCAGAATTGAAGGGGGACTTGGTCGCTATTGAAGCACTTGCGTGGGAATCCAGGGACACCGTGGGGGCTGCCTTCACTTGGTGTAATGGGAGGCCGGGGGAGGAAATAGTTTGGGAGAGGATTGACAGATGTCTGAGTAATGTTGCTTGGCAGGAGCTGTTTCCAGTGCATGAGTTGACACACCTGGATTTCAGTCGGTAG

Protein sequence

MAVDSVVVVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVDGGVNPWRFSGIYGFPQAELKGDLVAIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFSR
Homology
BLAST of Lag0036574 vs. NCBI nr
Match: TXG63522.1 (hypothetical protein EZV62_010516 [Acer yangbiense])

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-14
Identity = 71/234 (30.34%), Postives = 99/234 (42.31%), Query Frame = 0

Query: 23  GKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSI 82
           GK WKR ARES    T   A LT+GG  ++V   ++  +     RV ++ ++       I
Sbjct: 4   GKKWKRMARESQRKTT---AGLTIGGRVQEVSKRKVIFEDLVSDRVSKKGKLGSHRAGKI 63

Query: 83  SAVADLQPR-RVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV--DGGVNPWRFSGIY 142
             V + +    V S GRSGG  LLW    +  +LSYS  HID  +  D G+  WRFSGIY
Sbjct: 64  REVLEYEGGFGVDSSGRSGGLLLLWKNHCKVLVLSYSAGHIDARIHEDNGLQ-WRFSGIY 123

Query: 143 GFPQAE-------LKGDLVAIEALAW---------------------ESRDTV------- 202
           G P          L   L  ++ L W                       RD +       
Sbjct: 124 GDPNPSNRMNTWTLMRRLKEVDNLPWVCGGDFNELLSMSEKLGGSEKAIRDIIRFRQVVD 183

Query: 203 ----------GAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFS 209
                     G  FTW N R G + V ER+DR L++  W+ ++    + HL F+
Sbjct: 184 DCEFIDLGFSGPKFTWNNMREGRDNVQERLDRILASTNWRNMYQQITIEHLGFN 233

BLAST of Lag0036574 vs. NCBI nr
Match: PKA50374.1 (hypothetical protein AXF42_Ash013463 [Apostasia shenzhenica])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13
Identity = 56/160 (35.00%), Postives = 72/160 (45.00%), Query Frame = 0

Query: 93  VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVDGGVN--PWRFSGIYG---------- 152
           VS VGRSGG A+LWN +   +LLS+S +HID  V    N   WRF+G YG          
Sbjct: 59  VSCVGRSGGLAMLWNDDFDVTLLSFSCSHIDVSVHHLSNAVAWRFTGFYGESVESRKYLS 118

Query: 153 ------------------------FPQAELKGDLVAIEALAWESRDT-----------VG 206
                                     Q+E +G L   E      R+            +G
Sbjct: 119 WQLLGKLAERYQGPWLCAGDFNEVLYQSEKQGGLPRDERKTIAFREVLNKCQLIDMGFIG 178

BLAST of Lag0036574 vs. NCBI nr
Match: XP_028075737.1 (uncharacterized protein LOC114277953 [Camellia sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13
Identity = 52/160 (32.50%), Postives = 69/160 (43.12%), Query Frame = 0

Query: 93  VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV--DGGVNPWRFSGIYGFPQAELKGD- 152
           V  VG SGG ALLW  E++  + S+S  H+D  +  + GV  W F+G YG P A L+ D 
Sbjct: 59  VDRVGLSGGLALLWVGEIQLQIKSFSRGHVDSIILSESGVASWCFTGFYGNPIASLRSDS 118

Query: 153 ------------------------LVAIEALAWESRDT--------------------VG 206
                                   L A E     +R                       G
Sbjct: 119 WELLRRLQDQMHLPWLCAGDFNEILYAHEKSGMAARSQRQMDGFRQVLSDCDLADLGFEG 178

BLAST of Lag0036574 vs. NCBI nr
Match: KAF4372682.1 (hypothetical protein F8388_000849, partial [Cannabis sativa])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-13
Identity = 74/233 (31.76%), Postives = 100/233 (42.92%), Query Frame = 0

Query: 34  LADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDM-----TVSISAVADL 93
           +A+  N  +P   GG KRK+D D +  +  KK R+EE+++  P +     T      A+ 
Sbjct: 502 VANAINKVSPKVGGGGKRKMDVD-VHYENVKKGRLEEQSKYSPSLVFLSETKLYGGWAEG 561

Query: 94  QPRRVS--------SVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD-GGVNPWRFSGIY 153
             R++S         VG+SGG  LLWN +   S+ S+S  HID  V   G+N WRF+G Y
Sbjct: 562 IRRQISFSNSFHVDCVGKSGGLLLLWNDDWEVSVKSFSVGHIDALVKCPGLNVWRFTGFY 621

Query: 154 GFPQA-----------ELKG---------------------------DLVAIEAL--AWE 208
           G P+A            LKG                            L AI     A +
Sbjct: 622 GNPKASSRINSWQLLCRLKGLFDLPWICGGDFNEVLSINEKKGGVDRSLSAISDFQQALD 681

BLAST of Lag0036574 vs. NCBI nr
Match: PWA83198.1 (hypothetical protein CTI12_AA170930 [Artemisia annua])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-13
Identity = 59/183 (32.24%), Postives = 87/183 (47.54%), Query Frame = 0

Query: 27  KRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTRVEEENRVHPDMTVSISAVA 86
           K  + ++ ADV N   P +     R+    +     GK++  E +N    D+ +      
Sbjct: 22  KPDSTKAQADVENTNQPKSWKRRTREETHTRSISSVGKRSLEELDNEDQMDVDIV----- 81

Query: 87  DLQPRR---VSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV-DGGVNPWRFSGIYGFP 146
             +PR    V S+GR+GG  L W  E   ++ ++S NHID  V D   N WR +GIYG+P
Sbjct: 82  -KKPRELLVVDSIGRAGGLLLFWKKECDLTIRTFSQNHIDFVVKDENGNMWRGTGIYGWP 141

Query: 147 QAE-------LKGDLVAIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQE 199
           + +       L   L   +  AW+   T G   TW NGR G   V +R+DR L+N  W +
Sbjct: 142 RRQDKHRTWALMRSLRTNQDQAWD-MTTTGVKLTWSNGRRGNANVKKRLDRFLTNSHWFD 197

BLAST of Lag0036574 vs. ExPASy TrEMBL
Match: A0A803L8S1 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-16
Identity = 76/248 (30.65%), Postives = 103/248 (41.53%), Query Frame = 0

Query: 8   VVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTR 67
           + +G E    GK  + KGWKR +RE      +++  + + G KR+   DQ   + G    
Sbjct: 192 ITEGEERG-SGKIFTRKGWKRNSREG---DHSMEGDVKIAGEKRRT-RDQDGSEDG---- 251

Query: 68  VEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD 127
                           +V D    R     RSGG ALLW   +  S+ S+S NHID W+ 
Sbjct: 252 ----------------SVLDDDNDRGEGRKRSGGLALLWKNNLDVSIKSFSQNHIDAWIS 311

Query: 128 GGVN-PWRFSGIYGFPQAE-------LKGDLVAIEALAW--------------------- 187
             V+  WRF+GIYGFP+ E       L   L++  A  W                     
Sbjct: 312 SAVHGGWRFTGIYGFPEDENKHKTGVLLKSLMSTVAEPWLVGGDFNLMLLSCEKQGGRDF 371

Query: 188 --ESRDT---------------VGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHE 210
             E  D                +G  FTW N R G E V E++DR L+N AW+E FP   
Sbjct: 372 NNEEADVLRDAVQFCQLLDLGYIGHNFTWTNNRGGIENVQEQLDRYLANHAWKESFPGSF 414

BLAST of Lag0036574 vs. ExPASy TrEMBL
Match: A0A803LCM9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 68/244 (27.87%), Postives = 98/244 (40.16%), Query Frame = 0

Query: 8   VVQGREGDKGGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKVDSDQLAGQGGKKTR 67
           V  G E    G   +GKGWKR +R+      ++   + + G KR +D+     +      
Sbjct: 120 VSSGTEEAMKGDGKAGKGWKRVSRDM---DHSMSTGVVVLGEKRSLDNSMEESEAVMTVS 179

Query: 68  VEEENRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWVD 127
           +E+E R    +  ++   +           R GG ALLWN  +  ++ S+S NHID  V 
Sbjct: 180 IEKEKRRRVQVPNAVKVASPTNRALGEGRRRRGGLALLWNNSIDVNIRSFSLNHIDARVR 239

Query: 128 G-GVNPWRFSGIYGFPQAELK---------------------GDLV-------------- 187
               + WRFSGIYG P  E K                     GDL+              
Sbjct: 240 SITQDEWRFSGIYGHPDEENKYKIGQLLISLKGGTDTPWLCGGDLILMLHSGEKQGGRVF 299

Query: 188 ----------AIEALAWESRDTVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHE 206
                      +     E    +G  FTW N R GEE + ER+DR L+N  W++ F    
Sbjct: 300 DMEEAEILRDVVGVCELEDLGFIGHDFTWSNNRGGEESIQERLDRFLANRTWRDAFQGSF 359

BLAST of Lag0036574 vs. ExPASy TrEMBL
Match: A0A2N9H567 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34870 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-15
Identity = 71/237 (29.96%), Postives = 100/237 (42.19%), Query Frame = 0

Query: 20  NVSGKGWKRRARESLADVTNLQAPL-TLGGSKR-KVDSDQLAGQ---GGKKTRVEEENRV 79
           N     WK+RAR + + + +   P+ T G SKR +V  D +      G KK   E+E  V
Sbjct: 385 NTKQSTWKKRARHTPSAILDHNYPMETKGVSKRTRVSEDGVDPSDTIGNKKRNTEKEVSV 444

Query: 80  --------HPDMTVSISAVADLQPRRVSS---------------VGRSGGPALLWNPEVR 139
                   H D  V       L+ + V S               VG  GG ALLW  EV 
Sbjct: 445 RELREVVKHEDPKVVFLMETRLELKNVESLRVKLGMQSSMGVERVGTGGGLALLWRDEVH 504

Query: 140 FSLLSYSPNHIDGWVD-GGVNPWRFSGIYGFPQAELKGDLVAIEALAWESRDTV------ 199
             + S+S  HID  +   G   W F+G YG P+   + D + +  +A+ +  T       
Sbjct: 505 IVVHSHSIAHIDITIRISGHRDWHFTGFYGNPETSKRDDFLDVYFVAFSAMMTCHGCFRR 564

Query: 200 -------------GAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHLDFS 209
                        G  FTW NGR G + V+ER+DR      W+ LFP  ++ H+ FS
Sbjct: 565 ALSDCALADMGFQGNKFTWWNGRYGTDCVYERLDRGCCTTDWKTLFPNAQIRHVPFS 621

BLAST of Lag0036574 vs. ExPASy TrEMBL
Match: A0A803LHG7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-15
Identity = 70/244 (28.69%), Postives = 102/244 (41.80%), Query Frame = 0

Query: 17  GGKNVSGKGWKRRARESLADVTNLQAPLTLGGSKRKV-----DSDQLAGQGGKKTRVEEE 76
           GGK  + K WKR  R+   ++ N    + + G KR+V      +D L   G + +     
Sbjct: 269 GGKEGTSKQWKRFNRDGDHNMVN---NINIAGEKRRVREGGIGADLLGISGEETSNKRRT 328

Query: 77  NRVHPDMTVSISAVADLQPRRVSSVGRSGGPALLWNPEVRFSLLSYSPNHIDGWV-DGGV 136
                D   S +  A  + RR     RSGG A+LW   +  +++S+S NHID WV + G 
Sbjct: 329 IEAETDKVASPTQWALGEGRR-----RSGGLAMLWKGSMDVTVMSFSLNHIDVWVKEDGQ 388

Query: 137 NPWRFSGIYGFPQAE-------LKGDLVAIEALAW----------------ESRD----- 196
           + WRF+G YG  + E       L   L  +    W                  RD     
Sbjct: 389 DAWRFTGFYGHLEDENKHLTGALMKSLTGVHGQPWLCGGDFNLMLTSNEKKGGRDFDNVE 448

Query: 197 -----------------TVGAAFTWCNGRPGEEIVWERIDRCLSNVAWQELFPVHELTHL 210
                             +G  FTW N R G+E V ER+D+  +N+AW++ FP   +THL
Sbjct: 449 AEILREAVNFCELVDMGFIGHDFTWTNNRGGKENVQERLDKYFANIAWKDCFPGSFVTHL 504

BLAST of Lag0036574 vs. ExPASy TrEMBL
Match: A0A803M8Y9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 56/163 (34.36%), Postives = 73/163 (44.79%), Query Frame = 0

Query: 93  VSSVG----RSGGPALLWNPEVRFSLLSYSPNHIDGWVD-GGVNPWRFSGIYGFPQAELK 152
           VS VG    RSGG ALLW   +  ++ SYS NHID WV       WRF+G+YGFP+ E K
Sbjct: 16  VSCVGEGRKRSGGLALLWKDTIDVTIKSYSQNHIDSWVKFPKKEGWRFTGVYGFPEEENK 75

Query: 153 ---GDLV------------------------------------------AIEALAWESRD 206
              G L+                                          A+ +   E   
Sbjct: 76  HKTGTLLENLGGSCDTPWVCGGDFNLMLISSEKQGGNDFRLDEADIFRGAVASCELEDLG 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TXG63522.12.4e-1430.34hypothetical protein EZV62_010516 [Acer yangbiense][more]
PKA50374.12.7e-1335.00hypothetical protein AXF42_Ash013463 [Apostasia shenzhenica][more]
XP_028075737.12.7e-1332.50uncharacterized protein LOC114277953 [Camellia sinensis][more]
KAF4372682.13.5e-1331.76hypothetical protein F8388_000849, partial [Cannabis sativa][more]
PWA83198.13.5e-1332.24hypothetical protein CTI12_AA170930 [Artemisia annua][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803L8S12.8e-1630.65Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A803LCM91.8e-1527.87Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A2N9H5676.8e-1529.96Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A803LHG78.9e-1528.69Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A803M8Y92.0e-1434.36Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036574.1Lag0036574.1mRNA