Lag0036556 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036556
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr3: 48439667 .. 48440105 (-)
RNA-Seq Expression	Lag0036556
Synteny	Lag0036556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGATAACTTAGGCAGAGGAGGGATCAGTTGGGTATTGCGTGACTCGAATGGCTCCTTGATCAGACTTGGTCTGTAGAGAGTTTCCCGAAAATGGGACATCAAAGCTTTGGAATCAAAAGCTATTTTGGAAGGGATCAAATCGATTGTGCATACCTGTGATCAAAATCAAATTTCCCTCGAGGTGGAATCAGACTCCATGGAAGCTGTGAAGGTCCTGACGGGGAGATCAGAGGACTGGTCGAAGATGAAGCTTTTCGTGGATGAAATTCAGGCTTTGGCTTCACGGTTTAAGTCCATCGTTTTCCTTCATTGTAGCAGAGAGGCGAATTTTGTGGCTCATTCAGTGGCGAGGAAAGCTATCGATTTTGATTTCACTTGTAACCAGATATCTTCCCTGGAATCAAATTTGGGGCGTGTGTTTTTGGGCCCCTGA

mRNA sequence

ATGAGAGTTTCCCGAAAATGGGACATCAAAGCTTTGGAATCAAAAGCTATTTTGGAAGGGATCAAATCGATTGTGCATACCTGTGATCAAAATCAAATTTCCCTCGAGGTGGAATCAGACTCCATGGAAGCTGTGAAGGTCCTGACGGGGAGATCAGAGGACTGGTCGAAGATGAAGCTTTTCGTGGATGAAATTCAGGCTTTGGCTTCACGGTTTAAGTCCATCGTTTTCCTTCATTGTAGCAGAGAGGCGAATTTTGTGGCTCATTCAGTGGCGAGGAAAGCTATCGATTTTGATTTCACTTGTAACCAGATATCTTCCCTGGAATCAAATTTGGGGCGTGTGTTTTTGGGCCCCTGA

Coding sequence (CDS)

ATGAGAGTTTCCCGAAAATGGGACATCAAAGCTTTGGAATCAAAAGCTATTTTGGAAGGGATCAAATCGATTGTGCATACCTGTGATCAAAATCAAATTTCCCTCGAGGTGGAATCAGACTCCATGGAAGCTGTGAAGGTCCTGACGGGGAGATCAGAGGACTGGTCGAAGATGAAGCTTTTCGTGGATGAAATTCAGGCTTTGGCTTCACGGTTTAAGTCCATCGTTTTCCTTCATTGTAGCAGAGAGGCGAATTTTGTGGCTCATTCAGTGGCGAGGAAAGCTATCGATTTTGATTTCACTTGTAACCAGATATCTTCCCTGGAATCAAATTTGGGGCGTGTGTTTTTGGGCCCCTGA

Protein sequence

MRVSRKWDIKALESKAILEGIKSIVHTCDQNQISLEVESDSMEAVKVLTGRSEDWSKMKLFVDEIQALASRFKSIVFLHCSREANFVAHSVARKAIDFDFTCNQISSLESNLGRVFLGP

Homology

[Close]

BLAST of Lag0036556 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 9   IKALESKAILEGIKSIVHTCDQNQISLEVESDSMEAVKVLTGRSEDWSKMKLFVDEIQAL 68
           I+ +E+ A+LEG+K     C    I   +ESD+   V +L   + D S + L ++EI  L
Sbjct: 538 IEYVEALAVLEGMKQAQLMCCNRII---IESDAQRVVNLLNKGNIDISYLGLVIEEILEL 597

Query: 69  ASRFKSIVFLHCSREANFVAHSVARKAIDFDF 101
            S F SI F    REAN VAH++A   ++F +
Sbjct: 598 KSHFSSISFNWVKREANMVAHTLAHSVVNFPY 626

[Close]

BLAST of Lag0036556 vs. NCBI nr
Match: XP_037439691.1 (uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides])

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-04
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 8   DIKALESKAILEGIKSIVHTCDQNQISLEVESDSMEAVKVLTGRSEDWSKMKLFVDEIQA 67
           D+ ++E+ A+LEG++   H       +L VESDS E V+ +T  SE  +   +  D+ + 
Sbjct: 349 DVPSMEALALLEGLRLAEHL---GIYALVVESDSQEIVQAMTDPSEYRASAAVVTDDCRQ 408

Query: 68  LASRFKSIVFLHCSREANFVAHSVAR 94
           + S F     +HC+RE+N VAH +AR
Sbjct: 409 VLSSFSRATTVHCARESNGVAHWLAR 431

[Close]

BLAST of Lag0036556 vs. NCBI nr
Match: KAF7814608.1 (putative ZmL1 non-LTR retrotransposon protein [Senna tora])

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-04
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 9   IKALESKAILEGIKSIVHTCDQNQISLEVESDSMEAVKVLTGRSEDWSKMKLFVDEIQAL 68
           I+ LE+ AILEGIK      + N   +EVE D  +   +L     D S ++L V+ I   
Sbjct: 389 IEYLEALAILEGIK---FAKEMNCNKIEVEGDCKKVYDLLLSSKLDLSYLRLIVENILDF 448

Query: 69  ASRFKSIVFLHCSREANFVAHSVARKAIDF-DFTCNQISSLE 110
            S+F  + F   SR+AN VAH++ +   +F D T N +  LE
Sbjct: 449 KSQFDLLSFKWASRDANMVAHTLVKADFNFSDVTSNSVVWLE 487

[Close]

BLAST of Lag0036556 vs. NCBI nr
Match: XP_023928427.1 (uncharacterized protein LOC112039753 [Quercus suber])

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-04
Identity = 30/92 (32.61%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 8   DIKALESKAILEGIKSIVHTCDQNQISLEVESDSMEAVKVLTGRSEDWSKMKLFVDEIQA 67
           +++ +E+ AI   I+  + T     I   +ESDS+E VK +   ++    ++  +++++ 
Sbjct: 50  EVEVIETLAIRWAIRFAIETSFNCVI---IESDSLEVVKAIQDTADSTCHIRHIIEDVKQ 109

Query: 68  LASRFKSIVFLHCSREANFVAHSVARKAIDFD 100
           LA   K+  FLH  REAN VAH++A  AI  D
Sbjct: 110 LAKAMKNCYFLHTKREANQVAHTLALNAIHVD 138

The following BLAST results are available for this feature:

BLAST of Lag0036556 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7821986.1	2.2e-04	36.96	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
XP_037439691.1	4.9e-04	36.05	uncharacterized protein LOC119307722 isoform X1 [Triticum dicoccoides]	[more]
KAF7814608.1	8.3e-04	36.27	putative ZmL1 non-LTR retrotransposon protein [Senna tora]	[more]
XP_023928427.1	8.3e-04	32.61	uncharacterized protein LOC112039753 [Quercus suber]	[more]

BLAST of Lag0036556 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 4..95 e-value: 4.0E-14 score: 52.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..100 e-value: 1.7E-11 score: 46.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 13..93 e-value: 2.24159E-15 score: 65.028
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036556.1	Lag0036556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity