Lag0036505 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036505
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	receptor lectin kinase
Location	chr3: 47585469 .. 47587354 (-)
RNA-Seq Expression	Lag0036505
Synteny	Lag0036505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCAAAACCGCTGGGAGAGAGGCTGCGGCGGCACGAACGGAAGAAAGACGATGGTGGATGTGGCACAAGCGGAAGAAAGACGACGGTGGAGGCAGCAGTGAACGGAACCGGAGGAGGAGACGGCGTGAAGCATGGTTGGGTTCTTTCTGGTTAAATTATTAAAAACTCTCCCGTGAGGTTAAACCCCAAGGTTTAATTTTGTTTTTAAATTAGGGGTAATTATACAAAATACAAATAAGTTAATAGTAACCCATTTATTCCTTAAAAAAAAAATCAATTGTCTATTTTGTTATAATTTTACATTTTTGTCAGCTCACAATCAGATATTAGAGGAGTTTATTTGTCAGCACACAATCAGATATTAAAGGAGCTTCTTTGTCAGCTCACAATCGGATATTAAAGAAGCTTAAGAAACTCATTTACGTATTTGTCCTTACAAGTTGATAGAAAAAAAAAAGGTAATACTAAAATAGATTAATAAAATAAGAGTTACATTTAGAAAAGAATAAAAATTGAATTAATGCATGAAATCTTACCATTGATAAATTTAGAAGATTTAAACAAATTTGAAATTCTTTTCAAAAAAAAAAACAAATTTGAAATTAATGGGTTAAATGAGCTCATCTACCATAATTTATGTTAAAATTACCCAAGTCTCCTAAATCCATAGAGGTTGTTTGGGGAAGGGTAATAGATTGGATTGGATTTGACTCGAATCCAAAATACAATGTTTGGTGGGTTGTAATCTTGTTGGATTGTATTTTGGTTTACAATCCAAACCCCATTCCTATGCTAATCCTCATTCCAAACTAATATTTTCTCTTTTTATAAAATTGGTGGAGCCCACCATTTATCTTTCTATTTATCTTATAATTTTTGTGGGTCTCACCATTTCTCTCTCCATTTTTTCTTCATAATTTTGATGGTCCCACCATCATTCTCTCAATTTTCTCATAATTTAGGTCTCATTTGATGACCATTTGGTTTTTTATTTTTTGTTTTTGAAAATTATGTTTGTTTCTTTCCAATTTTCTTACATGGTTTTCATCCTTGTTCAGGGACCAAAGATGTATTTTGCCCTATATAAAATTTTAGGATAAAATACTCTTTTGGTCCCCCATGTTTCGGGTTCGTTTCCAATAGGTCCCTAGGTTTCAAAATTGAACAATCAAGCCCCTACTGTTTAAGAAATAGTTCTATTGAGTCCCTGGACCGTTAACTTTTTTAACGGTGCTGACGTGGCAGGTTAAAAACATTAAAATAATAAATTTTAAATTAAAATAATAATTAATTAATTAATTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCTCTCTCCCCCGATTCCCTTTCCCCCTTTTCCTTCTTCTTCTCTCTCCTCTTCCTCCTCTCTCCCTCTCCTTCATCTTATCGTCGGCGTATACGCCAACCACCGCCACTGCATCTTCTCTCCATGCCTTTTGGATCGGAGCTACTGGTCGGCGGCGATTACAGGGCCATGCCTTTTACACTTCCCCTGTTCGATTCAAAAACTCCTCCGACGGCAAAACCTTTTCCTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTTTGTGGCCTTCCCAGTCAGTATTTATGCCTTCTCAATGCCACTGATGTCGGAAACTTCTCGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGAATCAATCTCAACAATATGGTCTCTAATGACTCCATCACCGCTTCCTATTTCGTCGACGACGGACCCATCAAACAGAATCTAA

mRNA sequence

ATGAGGGCAAAACCGCTGGGAGAGAGGCTGCGGCGGCACGAACGGAAGAAAGACGATGGTGGATGTGGCACAAGCGGAAGAAAGACGACGGTGGAGGCAGCAGTGAACGGAACCGGAGGAGGAGACGGCGTGAAGCATGGTTGGGTTCTTTCTGCTACTGGTCGGCGGCGATTACAGGGCCATGCCTTTTACACTTCCCCTGTTCGATTCAAAAACTCCTCCGACGGCAAAACCTTTTCCTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTTTGTGGCCTTCCCAGTCAGTATTTATGCCTTCTCAATGCCACTGATGTCGGAAACTTCTCGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGAATCAATCTCAACAATATGGTCTCTAATGACTCCATCACCGCTTCCTATTTCGTCGACGACGGACCCATCAAACAGAATCTAA

Coding sequence (CDS)

ATGAGGGCAAAACCGCTGGGAGAGAGGCTGCGGCGGCACGAACGGAAGAAAGACGATGGTGGATGTGGCACAAGCGGAAGAAAGACGACGGTGGAGGCAGCAGTGAACGGAACCGGAGGAGGAGACGGCGTGAAGCATGGTTGGGTTCTTTCTGCTACTGGTCGGCGGCGATTACAGGGCCATGCCTTTTACACTTCCCCTGTTCGATTCAAAAACTCCTCCGACGGCAAAACCTTTTCCTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTTTGTGGCCTTCCCAGTCAGTATTTATGCCTTCTCAATGCCACTGATGTCGGAAACTTCTCGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGAATCAATCTCAACAATATGGTCTCTAATGACTCCATCACCGCTTCCTATTTCGTCGACGACGGACCCATCAAACAGAATCTAA

Protein sequence

MRAKPLGERLRRHERKKDDGGCGTSGRKTTVEAAVNGTGGGDGVKHGWVLSATGRRRLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPSQYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESISTIWSLMTPSPLPISSTTDPSNRI

Homology

[Close]

BLAST of Lag0036505 vs. NCBI nr
Match: XP_022948346.1 (L-type lectin-domain containing receptor kinase S.4-like [Cucurbita moschata] >KAG6596399.1 L-type lectin-domain containing receptor kinase S.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 57  RLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPS 116
           RLQGHAFYTSPVRFKNSSDGK FSFSTAF +AVVPEYPTLGGHGLAFTIAPSK L GLPS
Sbjct: 60  RLQGHAFYTSPVRFKNSSDGKAFSFSTAFAIAVVPEYPTLGGHGLAFTIAPSKTLRGLPS 119

Query: 117 QYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           QYL LLNATDVGNFSNHL AVEFDTVQDFEFGDINDNH  I+
Sbjct: 120 QYLGLLNATDVGNFSNHLLAVEFDTVQDFEFGDINDNHVGIN 161

[Close]

BLAST of Lag0036505 vs. NCBI nr
Match: XP_022934604.1 (L-type lectin-domain containing receptor kinase S.4-like [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 57  RLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPS 116
           RLQGHAFY+SPVRFKNSSDGK FSFSTAF +AVVPEYPTLGGHGLAFTIA SKNL GLPS
Sbjct: 62  RLQGHAFYSSPVRFKNSSDGKAFSFSTAFAIAVVPEYPTLGGHGLAFTIAQSKNLRGLPS 121

Query: 117 QYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           QYL LLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNH  I+
Sbjct: 122 QYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIN 163

[Close]

BLAST of Lag0036505 vs. NCBI nr
Match: XP_023540042.1 (L-type lectin-domain containing receptor kinase S.4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 57  RLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPS 116
           RLQGHAFYTSPVRFKNSSDGK FSFSTAF +AVVPEYPTLGGHGLAFTIAPSK L GLPS
Sbjct: 60  RLQGHAFYTSPVRFKNSSDGKAFSFSTAFAIAVVPEYPTLGGHGLAFTIAPSKTLRGLPS 119

Query: 117 QYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           QYL LLNATDVGNFSNHL AVEFDTVQDFEFGDINDNH  I+
Sbjct: 120 QYLGLLNATDVGNFSNHLLAVEFDTVQDFEFGDINDNHVGIN 161

[Close]

BLAST of Lag0036505 vs. NCBI nr
Match: KAG6580526.1 (L-type lectin-domain containing receptor kinase S.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 57  RLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPS 116
           RLQGHAFY+SPVRFKNSSDGK FSFSTAF +AVVPEYPTLGGHGLAFTIA SKNL GLPS
Sbjct: 62  RLQGHAFYSSPVRFKNSSDGKAFSFSTAFAIAVVPEYPTLGGHGLAFTIAQSKNLRGLPS 121

Query: 117 QYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           QYL LLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNH  I+
Sbjct: 122 QYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIN 163

[Close]

BLAST of Lag0036505 vs. NCBI nr
Match: XP_022983987.1 (L-type lectin-domain containing receptor kinase S.4-like [Cucurbita maxima] >XP_022983988.1 L-type lectin-domain containing receptor kinase S.4-like [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 57  RLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLPS 116
           RLQGHAFY+SPVRFKNSSDGK FSFSTAF +AVVPEYPTLGGHGLAFTIA SKNL GLPS
Sbjct: 63  RLQGHAFYSSPVRFKNSSDGKAFSFSTAFAIAVVPEYPTLGGHGLAFTIAQSKNLRGLPS 122

Query: 117 QYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           QYL LLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNH  I+
Sbjct: 123 QYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIN 164

[Close]

BLAST of Lag0036505 vs. ExPASy Swiss-Prot
Match: Q9M2S4 (L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana OX=3702 GN=LECRKS4 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 47  GWVLSATGRRRLQGHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIA 106
           G +   T  +R+ GHAFY+ P+RFK     +  SFST+F +A+VPE+ TLGGHGLAF I 
Sbjct: 50  GAIRLTTETQRVIGHAFYSLPIRFKPIGVNRALSFSTSFAIAMVPEFVTLGGHGLAFAIT 109

Query: 107 PSKNLCG-LPSQYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESI---STIWS 166
           P+ +L G LPSQYL LLN++ V NFS+H FAVEFDTV+D EF DINDNH  I   S   S
Sbjct: 110 PTPDLRGSLPSQYLGLLNSSRV-NFSSHFFAVEFDTVRDLEFEDINDNHVGIDINSMESS 169

Query: 167 LMTPSPLPISSTT 176
           + TP+   ++++T
Sbjct: 170 ISTPAGYFLANST 181

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BLAST of Lag0036505 vs. ExPASy Swiss-Prot
Match: Q9M345 (L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK42 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-25
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 60  GHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNL-CGLPSQY 119
           GHAF T  +RFK+S +G   SFST FV A+  + PTL GHG+AF +AP+  L   LPSQY
Sbjct: 64  GHAFCTERIRFKDSQNGNVSSFSTTFVFAIHSQIPTLSGHGIAFVVAPTLGLPFALPSQY 123

Query: 120 LCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESI 158
           + L N ++ GN +NH+FAVEFDT+Q  EFGD NDNH  I
Sbjct: 124 IGLFNISNNGNDTNHIFAVEFDTIQSSEFGDPNDNHVGI 162

[Close]

BLAST of Lag0036505 vs. ExPASy Swiss-Prot
Match: O80939 (L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK41 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.3e-23
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 60  GHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNL-CGLPSQY 119
           GHAFYT P+RFK+S +G   SFST+FV A+  +   L GHG+AF +AP+ +L  G PSQY
Sbjct: 64  GHAFYTKPIRFKDSPNGTVSSFSTSFVFAIHSQIAILSGHGIAFVVAPNASLPYGNPSQY 123

Query: 120 LCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESI 158
           + L N  + GN +NH+FAVE DT+   EF D NDNH  I
Sbjct: 124 IGLFNLANNGNETNHVFAVELDTILSTEFNDTNDNHVGI 162

[Close]

BLAST of Lag0036505 vs. ExPASy Swiss-Prot
Match: Q9SZD5 (L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana OX=3702 GN=LECRK59 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-22
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 60  GHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLCGLP---- 119
           GH FY SPVRFKNS +G   SFST FV A+V     L GHGLAF I+P+K   GLP    
Sbjct: 60  GHVFYNSPVRFKNSPNGTVSSFSTTFVFAIVSNVNALDGHGLAFVISPTK---GLPYSSS 119

Query: 120 SQYLCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESI 158
           SQYL L N T+ G+ SNH+ AVEFDT Q+ EF D+++NH  I
Sbjct: 120 SQYLGLFNLTNNGDPSNHIVAVEFDTFQNQEFDDMDNNHVGI 158

[Close]

BLAST of Lag0036505 vs. ExPASy Swiss-Prot
Match: O81292 (L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK43 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 60  GHAFYTSPVRFKNSSDGKTFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNL-CGLPSQY 119
           GHAFYT P+RFK+S +    SFST FV+ +    PT+ GHG+AF IAP+  L   + SQY
Sbjct: 66  GHAFYTEPIRFKDSPNDTVSSFSTTFVIGIYSGIPTISGHGMAFFIAPNPVLSSAMASQY 125

Query: 120 LCLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHESIS 159
           L L ++T+ GN +NH+ AVEFDT+ + EF D NDNH  I+
Sbjct: 126 LGLFSSTNNGNDTNHILAVEFDTIMNPEFDDTNDNHVGIN 165

The following BLAST results are available for this feature:

BLAST of Lag0036505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948346.1	1.9e-44	90.20	L-type lectin-domain containing receptor kinase S.4-like [Cucurbita moschata] >K...	[more]
XP_022934604.1	1.9e-44	90.20	L-type lectin-domain containing receptor kinase S.4-like [Cucurbita moschata]	[more]
XP_023540042.1	1.9e-44	90.20	L-type lectin-domain containing receptor kinase S.4-like [Cucurbita pepo subsp. ...	[more]
KAG6580526.1	1.9e-44	90.20	L-type lectin-domain containing receptor kinase S.4, partial [Cucurbita argyrosp...	[more]
XP_022983987.1	1.9e-44	90.20	L-type lectin-domain containing receptor kinase S.4-like [Cucurbita maxima] >XP_...	[more]

BLAST of Lag0036505 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2S4	1.2e-28	53.38	L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana OX=3...	[more]
Q9M345	6.1e-25	56.57	L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=...	[more]
O80939	3.3e-23	53.54	L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana OX=...	[more]
Q9SZD5	1.3e-22	56.86	L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana OX=3...	[more]
O81292	2.2e-22	52.00	L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.200		coord: 37..176 e-value: 6.6E-29 score: 103.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR27007:SF160	L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4-LIKE	coord: 46..158
None	No IPR available	PANTHER	PTHR27007	FAMILY NOT NAMED	coord: 46..158
IPR001220	Legume lectin domain	PFAM	PF00139	Lectin_legB	coord: 53..155 e-value: 2.5E-27 score: 96.0
IPR001220	Legume lectin domain	CDD	cd06899	lectin_legume_LecRK_Arcelin_ConA	coord: 60..154 e-value: 6.93025E-44 score: 143.909
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 56..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036505.1	Lag0036505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0002229	defense response to oomycetes
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0004675	transmembrane receptor protein serine/threonine kinase activity