Lag0036448 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036448
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr3: 46579617 .. 46580009 (+)
RNA-Seq ExpressionLag0036448
SyntenyLag0036448
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGCGCCATCTAATGCGCAGTTAAGTGATGTTGTGAGGGAGGTAGGTGTTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCAGAAGAGGACATTCCAGGCGGCTTATTTGAAAAGGGAAGCAAACACGTGGATGGGATTTATAAGACAGAGAATGCTTCCAACAACGCACGACTCGACAATCTCCAGGGAACGAATTCTTCTAGCTTTTGCGATTCTGCAGTCTCTCAGCATCAATGTGGGGAGAATTATTTCAGGTGAAATATCTAGCTGTTGGAAGAAGAAGGTGGGGAAATTGGTTTTTTCCGAACACGATTACATTGCTGTGGAGAAGAGCAGGGTTCCAGTAGATGAGGGAGATGTGATTCTATTTGACAAGGGATTATAG

mRNA sequence

ATGGCTGTGGCGCCATCTAATGCGCAGTTAAGTGATGTTGTGAGGGAGGTAGGTGTTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCAGAAGAGGACATTCCAGGCGGCTTATTTGAAAAGGGAAGCAAACACGTGGATGGGATTTATAAGACAGAGAATGCTTCCAACAACGCACGACTCGACAATCTCCAGGGAACGAATTCTTCTAGCTTTTGCGATTCTGCAGTCTCTCAGCATCAATGTGGGGAGAATTATTTCAGGTGAAATATCTAGCTGTTGGAAGAAGAAGGTGGGGAAATTGGTTTTTTCCGAACACGATTACATTGCTGTGGAGAAGAGCAGGGTTCCAGTAGATGAGGGAGATGTGATTCTATTTGACAAGGGATTATAG

Coding sequence (CDS)

ATGGCTGTGGCGCCATCTAATGCGCAGTTAAGTGATGTTGTGAGGGAGGTAGGTGTTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCAGAAGAGGACATTCCAGGCGGCTTATTTGAAAAGGGAAGCAAACACGTGGATGGGATTTATAAGACAGAGAATGCTTCCAACAACGCACGACTCGACAATCTCCAGGGAACGAATTCTTCTAGCTTTTGCGATTCTGCAGTCTCTCAGCATCAATGTGGGGAGAATTATTTCAGGTGAAATATCTAGCTGTTGGAAGAAGAAGGTGGGGAAATTGGTTTTTTCCGAACACGATTACATTGCTGTGGAGAAGAGCAGGGTTCCAGTAGATGAGGGAGATGTGATTCTATTTGACAAGGGATTATAG

Protein sequence

MAVAPSNAQLSDVVREVGVEGAQWQLSKTQKRTFQAAYLKREANTWMGFIRQRMLPTTHDSTISRERILLAFAILQSLSINVGRIISGEISSCWKKKVGKLVFSEHDYIAVEKSRVPVDEGDVILFDKGL
Homology
BLAST of Lag0036448 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 45/126 (35.71%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 1   MAVAPSNAQLSDVVREVGVEGAQWQL-SKTQKRTFQAAYLKREANTWMGFIRQRMLPTTH 60
           ++ + S A+L ++ RE+G  G +W   S    RT++A+ LK  AN W+ FIR  + PTTH
Sbjct: 294 LSQSSSFAKLEEIGRELGKAGIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTH 353

Query: 61  DSTISRERILLAFAILQSLSINVGRIISGEISSCWKKKVGKLVFSEHDYIAVEKSRVPVD 120
           DS+IS E+I+L + ++   +INVG+++   I  C K++ GKL F    +  + ++ VP  
Sbjct: 354 DSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAGVPEY 413

Query: 121 EGDVIL 126
             D+++
Sbjct: 414 TDDLVI 419

BLAST of Lag0036448 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 6   SNAQLSDVVREVGVEGAQWQLSKTQKRTFQAAYLKREANTWMGFIRQRMLPTTHDSTISR 65
           ++ QL  V+ EV +EGA WQ+S     T     LKR A  W  F+  R +P+TH  T+++
Sbjct: 81  TDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAK 140

Query: 66  ERILLAFAILQSLSINVGRIISGEISSC-WKKKVGKLVFSEHDYIAVEKSRVPVDEGDVI 125
           +R+LL ++IL  +S+N+  I   EI +C   +K G L F         K+ VP  + + I
Sbjct: 141 DRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAI 200

Query: 126 LFDKG 130
           + + G
Sbjct: 201 VHNAG 205

BLAST of Lag0036448 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 10  LSDVVREVGVEGAQWQLSKTQKRTFQAAYLKREANTWMGFIRQRMLPTTHDSTISRERIL 69
           L  V+  V   G+QW + K    + +  YLK  AN W  F++   +P +H  TIS ER+L
Sbjct: 135 LQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYFVQYSFMPISHSYTISMERML 194

Query: 70  LAFAILQSLSINVGRIISGEISSCWKKKVGKLVF 104
           L +AIL   SINVG+II  EI +C KKK G + F
Sbjct: 195 LLYAILTEKSINVGKIILKEIHNCAKKKAGSVYF 228

BLAST of Lag0036448 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 4   APSNAQLSDVVREVGVEGAQWQLSKTQKRTFQAAYLKREANTWMGFIRQRMLPTTHDSTI 63
           A +  +L+ V+  V + GA+W +S     T   + L   A  W  F++ R+LPTTH  T+
Sbjct: 42  AITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTV 101

Query: 64  SRERILLAFAILQSLSINVGRIISGEISSCWKKKVGKLVF 104
           S+ER+LL +++L   SINVG+II  EI +   +K G L F
Sbjct: 102 SKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFF 141

BLAST of Lag0036448 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 0

Query: 9   QLSDVVREVGVEGAQWQLSKTQKRTFQAAYLKREANTWMGFIRQRMLPTTHDSTISRERI 68
           +L+ V+  V + GA+W +S     T   + L   A  W  F++ R+LPTTH   +S+ER+
Sbjct: 57  ELAMVLETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERV 116

Query: 69  LLAFAILQSLSINVGRIISGEISSCWKKKVGKLVF 104
           LL +++L   SIN+GR+I  EI +C  +K G L F
Sbjct: 117 LLLYSMLTGKSINMGRMIHREICACAARKSGALFF 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024971944.11.7e-1335.71uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
EXB53755.11.3e-1034.40hypothetical protein L484_022412 [Morus notabilis][more]
TYH88163.11.7e-1043.62hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum][more]
PON62892.12.9e-1039.00hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON50458.15.0e-1038.95hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036448.1Lag0036448.1mRNA