Lag0035716 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035716
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr3: 28290383 .. 28291048 (+)
RNA-Seq ExpressionLag0035716
SyntenyLag0035716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTATCATGTCGAAAGTGCCAAAATGTCGCCGCGTGAAGCGAAAAGCCGGTCGCGCCAGGGTAGTCCGAACTGATACTCCCTTCCCACCAACCACTGACTCTGAGAGAGAAAATGCAGAGAAAGAGGAACCGGAGAAAAAAGAGGTCGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGACTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAAACAAGGGCAAGAGTGTTGCTGCGGTATCGGAGGAGCCTGACAAGATAGGAGAGCCACAGTTGTCGTATGTCCGCTTCTTCAACAATCTTGCAAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGTTTCAGAGAGGATTCAGTGGTGATCTTCCGCATTTGCTGACGGCCGACATTACGAACCAAGGTTGGGAATCATTCTGTTCAAAGCCTGAATCTGTGAACGCGCAAGTAGTGCACGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCAAGGTGTAGAAGTTGACTGGAGTCCTAGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTAGCACCATCTAATGAGCAGCTGGGAGATGCTGTGCGGGAAGTTGGTATTGAAGGGGCATAG

mRNA sequence

ATGGAGGTTATCATGTCGAAAGTGCCAAAATGTCGCCGCGTGAAGCGAAAAGCCGGTCGCGCCAGGGTAGTCCGAACTGATACTCCCTTCCCACCAACCACTGACTCTGAGAGAGAAAATGCAGAGAAAGAGGAACCGGAGAAAAAAGAGGTCGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGACTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAAACAAGGGCAAGAGTGTTGCTGCGGTATCGGAGGAGCCTGACAAGATAGGAGAGCCACAGTTGTCGTATGTCCGCTTCTTCAACAATCTTGCAAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGTTTCAGAGAGGATTCAGTGGTGATCTTCCGCATTTGCTGACGGCCGACATTACGAACCAAGGTTGGGAATCATTCTGTTCAAAGCCTGAATCTGTGAACGCGCAAGTAGTGCACGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCAAGGTGTAGAAGTTGACTGGAGTCCTAGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTAGCACCATCTAATGAGCAGCTGGGAGATGCTGTGCGGGAAGTTGGTATTGAAGGGGCATAG

Coding sequence (CDS)

ATGGAGGTTATCATGTCGAAAGTGCCAAAATGTCGCCGCGTGAAGCGAAAAGCCGGTCGCGCCAGGGTAGTCCGAACTGATACTCCCTTCCCACCAACCACTGACTCTGAGAGAGAAAATGCAGAGAAAGAGGAACCGGAGAAAAAAGAGGTCGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGACTGAAGAAGAAAGGTTGCTCAAGCGAAGGGCAAACAAGGGCAAGAGTGTTGCTGCGGTATCGGAGGAGCCTGACAAGATAGGAGAGCCACAGTTGTCGTATGTCCGCTTCTTCAACAATCTTGCAAGAGCAAAATATGCTGAGCTGCTGAAGAGAGACTTCCTGTTTCAGAGAGGATTCAGTGGTGATCTTCCGCATTTGCTGACGGCCGACATTACGAACCAAGGTTGGGAATCATTCTGTTCAAAGCCTGAATCTGTGAACGCGCAAGTAGTGCACGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCAAGGTGTAGAAGTTGACTGGAGTCCTAGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTAGCACCATCTAATGAGCAGCTGGGAGATGCTGTGCGGGAAGTTGGTATTGAAGGGGCATAG

Protein sequence

MEVIMSKVPKCRRVKRKAGRARVVRTDTPFPPTTDSERENAEKEEPEKKEVEDKAREEAEKKTEEERLLKRRANKGKSVAAVSEEPDKIGEPQLSYVRFFNNLARAKYAELLKRDFLFQRGFSGDLPHLLTADITNQGWESFCSKPESVNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQLGDAVREVGIEGA
Homology
BLAST of Lag0035716 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-08
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0

Query: 97  VRFFNNLARAKYAE-LLKRDFLFQRGFSGD------LPHLLTADITNQGWESFCSKPESV 156
           V+  +  A  +Y E +  R    ++GF GD       P  +   IT   W+ FC+ PE +
Sbjct: 14  VKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDL 73

Query: 157 NAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQL 216
            A +V EFYAN+   +   V V+GV+V  S   IN +Y L D P   ++E V A +  +L
Sbjct: 74  IAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPEL 133

Query: 217 GDAVREVGIEGA 222
              +  V I GA
Sbjct: 134 ATVLETVAIAGA 144

BLAST of Lag0035716 vs. NCBI nr
Match: RYE21173.1 (hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium])

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-07
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 99  FFNNLARAKYAELLKRDFLFQRGFSGDLPHLLTADITNQ----GWESFCSKPE-SVNAQV 158
           F +  A  +Y  L++R  +F+RG        + + I N      W  FC+ PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 159 VHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQD--FPHAGYNEMVVAPSNEQL 210
           ++EFYAN+ + E   V V+GV+VD S   INAL    D  F + GY + +  P+ +++
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEM 125

BLAST of Lag0035716 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 42/133 (31.58%), Postives = 63/133 (47.37%), Query Frame = 0

Query: 97  VRFFNNLARAKYA-ELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPES 156
           V+F    A  +Y   +  R    ++GF        G LP +    IT   W+ FC+ PE 
Sbjct: 23  VKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLPFIAQV-ITQHNWKQFCAHPED 82

Query: 157 VNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQ 216
               +V EFYAN+ + E   V V+GV+V WS   INA++ L D P   ++E +   + + 
Sbjct: 83  PIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQD 142

Query: 217 LGDAVREVGIEGA 222
           L   +  V   GA
Sbjct: 143 LITVLETVAAAGA 153

BLAST of Lag0035716 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-06
Identity = 41/133 (30.83%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 97  VRFFNNLARAKYA-ELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPES 156
           V+F    A  +Y   +  R    ++GF        G LP +    IT   W+ FC+ PE 
Sbjct: 14  VKFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLPFIAQV-ITQHNWKQFCAHPED 73

Query: 157 VNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQ 216
               +V EFYAN+ +     V V+GV+V WS   INA++ L D P   ++E +   +   
Sbjct: 74  PIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHD 133

Query: 217 LGDAVREVGIEGA 222
           L   +  V + GA
Sbjct: 134 LITVLETVAVAGA 144

BLAST of Lag0035716 vs. NCBI nr
Match: KAE8680640.1 (hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-05
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 95  SYVRFFNNLARAKYAELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPE 154
           S+ +F ++ A+A++    K+   F+ GF        G  P ++   +T   W+ F   P 
Sbjct: 13  SWKQFEDDEAKARFQNFKKQKLFFELGFIFIEETDGGFGPDVMDI-VTPLKWKKFTRHPG 72

Query: 155 SVNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDF--PHAGYNE 200
           SVNA VV EFYANI +     + V+G ++ ++PS I   ++LQD    HA + E
Sbjct: 73  SVNASVVKEFYANISKPNQHSIFVRGKQIHFTPSAIIRYFHLQDVVDNHAKFEE 125

BLAST of Lag0035716 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0

Query: 97  VRFFNNLARAKYAE-LLKRDFLFQRGFSGD------LPHLLTADITNQGWESFCSKPESV 156
           V+  +  A  +Y E +  R    ++GF GD       P  +   IT   W+ FC+ PE +
Sbjct: 14  VKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDL 73

Query: 157 NAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQL 216
            A +V EFYAN+   +   V V+GV+V  S   IN +Y L D P   ++E V A +  +L
Sbjct: 74  IAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPEL 133

Query: 217 GDAVREVGIEGA 222
              +  V I GA
Sbjct: 134 ATVLETVAIAGA 144

BLAST of Lag0035716 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 99  FFNNLARAKYAELLKRDFLFQRGFSGDLPHLLTADITNQ----GWESFCSKPE-SVNAQV 158
           F +  A  +Y  L++R  +F+RG        + + I N      W  FC+ PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 159 VHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQD--FPHAGYNEMVVAPSNEQL 210
           ++EFYAN+ + E   V V+GV+VD S   INAL    D  F + GY + +  P+ +++
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEM 125

BLAST of Lag0035716 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 42/133 (31.58%), Postives = 63/133 (47.37%), Query Frame = 0

Query: 97  VRFFNNLARAKYA-ELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPES 156
           V+F    A  +Y   +  R    ++GF        G LP +    IT   W+ FC+ PE 
Sbjct: 23  VKFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLPFIAQV-ITQHNWKQFCAHPED 82

Query: 157 VNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQ 216
               +V EFYAN+ + E   V V+GV+V WS   INA++ L D P   ++E +   + + 
Sbjct: 83  PIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQD 142

Query: 217 LGDAVREVGIEGA 222
           L   +  V   GA
Sbjct: 143 LITVLETVAAAGA 153

BLAST of Lag0035716 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 41/133 (30.83%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 97  VRFFNNLARAKYA-ELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPES 156
           V+F    A  +Y   +  R    ++GF        G LP +    IT   W+ FC+ PE 
Sbjct: 14  VKFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLPFIAQV-ITQHNWKQFCAHPED 73

Query: 157 VNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDFPHAGYNEMVVAPSNEQ 216
               +V EFYAN+ +     V V+GV+V WS   INA++ L D P   ++E +   +   
Sbjct: 74  PIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHD 133

Query: 217 LGDAVREVGIEGA 222
           L   +  V + GA
Sbjct: 134 LITVLETVAVAGA 144

BLAST of Lag0035716 vs. ExPASy TrEMBL
Match: A0A6A2YMQ9 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111372pilonHSYRG00020 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 95  SYVRFFNNLARAKYAELLKRDFLFQRGF-------SGDLPHLLTADITNQGWESFCSKPE 154
           S+ +F ++ A+A++    K+   F+ GF        G  P ++   +T   W+ F   P 
Sbjct: 13  SWKQFEDDEAKARFQNFKKQKLFFELGFIFIEETDGGFGPDVMDI-VTPLKWKKFTRHPG 72

Query: 155 SVNAQVVHEFYANIDEEEGFQVIVQGVEVDWSPSVINALYNLQDF--PHAGYNE 200
           SVNA VV EFYANI +     + V+G ++ ++PS I   ++LQD    HA + E
Sbjct: 73  SVNASVVKEFYANISKPNQHSIFVRGKQIHFTPSAIIRYFHLQDVVDNHAKFEE 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON42276.14.7e-0833.33hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
RYE21173.18.8e-0732.20hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium][more]
PON46472.11.1e-0631.58hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.13.3e-0630.83hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
KAE8680640.11.3e-0532.46hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5B0K02.3e-0833.33Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE... [more]
A0A4Q3ENY74.3e-0732.20Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099... [more]
A0A2P5BCG45.6e-0731.58Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5AGA51.6e-0630.83Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A6A2YMQ96.1e-0632.46Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111372pilon... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035716.1Lag0035716.1mRNA