Lag0035654 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035654
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCACTA en-spm transposon protein
Locationchr3: 26404378 .. 26406349 (+)
RNA-Seq ExpressionLag0035654
SyntenyLag0035654
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGTCGTTAATTTTTGGATGGAAACCATTAGATTTTACGGTAAGAGGAGGAAAAGAGAAGAAACATTTTTCAATAAGGGTATTTTCTAATTTTTTTTTAAGTTCAAGGGTATTTTTGAAACTGAAACTGTAACAGTTTTCATCCAAAAATTAACGGTAAGGGTATTTTTGAAATATTTTTCAAAGTTCAGGGGTATTTTTGAAACTTTTCAAAGTTCAGGGGCAATTTTGAAACAAACCCCATAGTTTAGGGTTTTTTTTTTCTTTTTTTTTTTTAATTTAGCTTTTTTTTTTTTCTATGTGTGACAATCTACTTCAATGTAAATTTGTGTCGAGTTCAATCTTAGAGTTCATTTTTTACACTTAATCCATAACACCCGTGACCCAATATATCGACACAAATTTGAAGTACCGACTTTGTCTTAGTGTTAGATATTCAAGTTCAAGTAATTTCGAACGTTGTCCAATGAACTTCTTTTAATAAGATTTTTTATAGAAAATTGTGGAATCGAATAAAGGGAGTCAGATTCATGATGTCATTTAACCACAGGGCTGAGTCGAAGTCATTTATAAATATCCAATATGAAGCGATAAGATGTGAATAAACTAATTAAGTTACATGTACATTATCAATAAGTGGTTTTCTTAAATTTGACTGGTATCTGAGTTGCAGAAAGATATAGATCTCATTAAATTGTTTGAACGAACCCATGCACAAGATGAAAAGTGGGTGAACCAGGGAGCGGAGGATGCACATGTAAAGATCTACACTTTAACTAGTTTGTGAAGTTTACAAGGATTTAATTGTTTCTTTTATAAATGTAGGGGAAAATGGTAGAACTGCTAGAATTGTCAGGATTGATGTGGAGGCAAAACCACTATCCTCATTTGTCGTGCGTGAAAATAAAAAGGAAGCAAATGGGCCAAGGCCCATTTACATTAAGTTAATTTAGGTTTTCAGCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTGTTGCCGTGGGTTGAAAAAAAACACAGAAGTGACTGACAGTGGTTTTTCGGCTGGGAGCTTTTTGAGTACGACAGTGAGGTTTTATAAGAGATTGAGATTTATTCTCTTGTGGGATTGAGGGTTTTGTATCTTTGTTGATCCCAAGCTACCGGGTTGTGATACTTGGAAGTCAATAGCTTTTGTTGGGCTATTGAGGGTTGGTTTGTAGCGTTATTGAAGGCTTCCTGTAATTTCTCAAATTCTAGTAGAACCTGCAGTTGCGGAAGACTTAACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTTCAGTGTCGTTTCTTTTTTCCCTATCTCTTTTATTATTTTCATGACTATTATTTTTGGCTTGTGTTGGCTTAACCTGTGGAAAGGGAGATAGTTATAATATTATTGATTGTCGTCATAATATTATTGTTATTTGTATTCTGCATTTTTCTCCCAACAGCTAGATGCTCCCACTCCAGAATTGTCTCAACCACTCTCTAGATTTGTCATATGTGAGACGGTTTTGGGTAGACGGTCTGGCCACATTAGAGGCATGGGATGCAGACCTAAGTCGTTGAGATCAACCACCAGTGACACATCGTCCAGTTCAGGACCTACACAGAGAGAACTTGAACAACAACAAGAGATAATGACCTTGAAGGCTACCATGGCAAATATGCAGGAAAAGTTCCAGGCAAGTACGCAGCAGACAAGGACTGAGATGAACATCCTGAAAGACATGGTCCAACAGTTTATGGACTCACATCGCATGGATACACCAAACTTAGGTATGCAGAATTTTAATACCTTTGTAACTTACACATTTATAAATTCAGCGCCATACAATTTTAAATTTAGATTAGTGTCTTATACGAGATCTGACTCGCATGTATATGTGGGAGGTTTGAAGATTGTAGTGTTGCCCAGGTGTTATGA

mRNA sequence

ATGCCATTGTCGTTAATTTTTGGATGGAAACCATTAGATTTTACGAAAGATATAGATCTCATTAAATTGTTTGAACGAACCCATGCACAAGATGAAAAGTGGGTGAACCAGGGAGCGGAGGATGCACATCTAGATGCTCCCACTCCAGAATTGTCTCAACCACTCTCTAGATTTGTCATATGTGAGACGGTTTTGGGTAGACGGTCTGGCCACATTAGAGGCATGGGATGCAGACCTAAGTCGTTGAGATCAACCACCAGTGACACATCGTCCAGTTCAGGACCTACACAGAGAGAACTTGAACAACAACAAGAGATAATGACCTTGAAGGCTACCATGGCAAATATGCAGGAAAAGTTCCAGGCAAGTACGCAGCAGACAAGGACTGAGATGAACATCCTGAAAGACATGGTCCAACAGTTTATGGACTCACATCGCATGGATACACCAAACTTAGATTGTAGTGTTGCCCAGGTGTTATGA

Coding sequence (CDS)

ATGCCATTGTCGTTAATTTTTGGATGGAAACCATTAGATTTTACGAAAGATATAGATCTCATTAAATTGTTTGAACGAACCCATGCACAAGATGAAAAGTGGGTGAACCAGGGAGCGGAGGATGCACATCTAGATGCTCCCACTCCAGAATTGTCTCAACCACTCTCTAGATTTGTCATATGTGAGACGGTTTTGGGTAGACGGTCTGGCCACATTAGAGGCATGGGATGCAGACCTAAGTCGTTGAGATCAACCACCAGTGACACATCGTCCAGTTCAGGACCTACACAGAGAGAACTTGAACAACAACAAGAGATAATGACCTTGAAGGCTACCATGGCAAATATGCAGGAAAAGTTCCAGGCAAGTACGCAGCAGACAAGGACTGAGATGAACATCCTGAAAGACATGGTCCAACAGTTTATGGACTCACATCGCATGGATACACCAAACTTAGATTGTAGTGTTGCCCAGGTGTTATGA

Protein sequence

MPLSLIFGWKPLDFTKDIDLIKLFERTHAQDEKWVNQGAEDAHLDAPTPELSQPLSRFVICETVLGRRSGHIRGMGCRPKSLRSTTSDTSSSSGPTQRELEQQQEIMTLKATMANMQEKFQASTQQTRTEMNILKDMVQQFMDSHRMDTPNLDCSVAQVL
Homology
[Close]
BLAST of Lag0035654 vs. NCBI nr
Match: KAA0033931.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 0 

Query: 16  KDIDLIKLFERTHAQDEKWVNQGAEDAH------LDAPTPELSQPLSRFVICETVLGRRS 75
           K +D ++LF  TH +   +V+Q AEDAH         PTPE S PLS   IC+ VLGRR 
Sbjct: 227 KPVDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPTPEDSHPLSEDEICDQVLGRRP 286

Query: 76  GHIRGMGCRPKSLRSTTSDTSSSSGPTQRELEQQQEIMTLKATMANMQEKFQASTQQTRT 135
           G+ +G+G RPK     T+  SSSS   ++E+E Q ++      +       QA   Q  +
Sbjct: 287 GYSKGLGWRPKPKARRTASASSSSTSAEKEIELQTKLHEALERIEVQDRNHQALASQVES 346

Query: 136 EMNILKDMVQ 140
              +++++ +
Sbjct: 347 MKKMIEELTR 356

[Close]
BLAST of Lag0035654 vs. NCBI nr
Match: TYK02897.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 0 

Query: 16  KDIDLIKLFERTHAQDEKWVNQGAEDAH------LDAPTPELSQPLSRFVICETVLGRRS 75
           K +D ++LF  TH +   +V+Q AEDAH         PTPE S PLS   IC+ VLGRR 
Sbjct: 234 KPVDRVELFRETHVRAGTFVSQAAEDAHNQMLELQSQPTPEDSHPLSEDEICDQVLGRRP 293

Query: 76  GHIRGMGCRPKSLRSTTSDTSSSSGPTQRELEQQQEIMTLKATMANMQEKFQASTQQTRT 135
           G+ +G+G RPK     T+  SSSS   ++E+E Q ++      +       QA   Q  +
Sbjct: 294 GYSKGLGWRPKPKARRTASASSSSTSAEKEIELQTKLHEALERIEVQDRNHQALASQVES 353

Query: 136 EMNILKDMVQ 140
              +++++ +
Sbjct: 354 MKKMIEELTR 363

[Close]
BLAST of Lag0035654 vs. NCBI nr
Match: KAA0036796.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-10
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 0 

Query: 18  IDLIKLFERTHAQDEKWVNQGAEDAH------LDAPTPELSQPLSRFVICETVLGRRSGH 77
           +D ++LF  TH Q   +V+Q AEDAH         PTPE SQPLS+  IC+ VLGRR G+
Sbjct: 206 VDRVELFRETHVQAGTFVSQAAEDAHNQILELQSQPTPEGSQPLSKVEICDQVLGRRPGY 265

Query: 78  IRGMGCRPK-SLRSTTSDTSSS---SGPTQRELEQQQEIMTLKATMANMQEKFQASTQQT 137
            +G+G  PK   R T S +SSS   S  TQ+E+E Q ++      +      +QA   Q 
Sbjct: 266 SKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALERIEVQDRNYQALASQV 325

Query: 138 RTEMNILKDMVQ 140
                +++D  +
Sbjct: 326 EAMKKMIEDQTR 337

[Close]
BLAST of Lag0035654 vs. NCBI nr
Match: TYJ98333.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0 

Query: 16  KDIDLIKLFERTHAQDEKWVNQGAEDAH------LDAPTPELSQPLSRFVICETVLGRRS 75
           + ++ ++LFE TH +   +V+Q AED H         PT E SQPLS   IC  VLGRRS
Sbjct: 39  ESVNRVELFEETHVRPGTFVSQAAEDTHNQMLELQSQPTLEGSQPLSEDEICNQVLGRRS 98

Query: 76  GHIRGMGCRPK-SLRSTTSDTSSS---SGPTQRELEQQQEIMTLKATMANMQEKFQASTQ 135
           G+ +G+G RPK   R TTS  SSS   S  TQ+E+E Q ++  +   +      +QA   
Sbjct: 99  GYSKGLGWRPKPKARRTTSANSSSTSCSQSTQKEIELQAKLNEVLEWIEVQDRNYQALAS 158

Query: 136 QTRTEMNILKD 137
           Q      +++D
Sbjct: 159 QVERMQKLIED 169

[Close]
BLAST of Lag0035654 vs. NCBI nr
Match: KAA0034805.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 0 

Query: 16  KDIDLIKLFERTHAQDEKWVNQGAEDAHLDAPTPELSQPLSRFVICETVLGRRSGHIRGM 75
           K +D ++LF  TH +   +V+Q AEDAH   PTPE SQPLS   IC+ VLGRR G+ +G+
Sbjct: 237 KPVDRVELFRETHVRAGTFVSQAAEDAH---PTPEGSQPLSEDEICDQVLGRRPGYSKGL 296

Query: 76  GCRPKSLRSTTSDTSSSSGPTQRELEQQQEIMTLKATMANMQEKFQAST---QQTRTEMN 135
           G  PK     T+  SSSS    +  E++ E   L+A +    E+ +      Q   +++ 
Sbjct: 297 GWGPKPKARRTASASSSSTSCSQFTEKEIE---LQAKLQEALERIEVQDRIHQALASQVE 356

Query: 136 ILKDMVQQF 142
            +K M+++F
Sbjct: 357 SMKKMIEEF 359

The following BLAST results are available for this feature:
BLAST of Lag0035654 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033931.13.6e-1034.62CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK02897.13.6e-1034.62CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0036796.13.6e-1037.88CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYJ98333.11.0e-0938.17CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0034805.11.0e-0937.21CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of Lag0035654 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035654.1Lag0035654.1mRNA