Lag0035405 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035405
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Locationchr3: 21026823 .. 21027230 (+)
RNA-Seq ExpressionLag0035405
SyntenyLag0035405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGAGGCGAAGGCTGTCCTTGAAGGCCTGAAATTCACCATTTCGGTTGTTGATTTTGGTATTAATTTGAGCCACCTTTCGCTGTTAGTGGAATCAAATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCGGAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGAAGATGAATTTCAAGGAGGTTTCCTTTTTGTTTTGCCCTAGGGATCAAAATGTTGTTGCTGATCTGTTGGCGCGCATGGCTATCCCTTCCCCTCCCCTTATTCCCGCGTTGGAATCCTCTCCCATGGTGGAAGAAGGAGTGGGTTTTTGGTATGGGCCTCCCCCATCTAGCATTAAAGGCATCTTAAAGGAGGTTGGTGTATCCAATTTTATTTTTCCTTAA

mRNA sequence

ATGCTGGAGGCGAAGGCTGTCCTTGAAGGCCTGAAATTCACCATTTCGGTTGTTGATTTTGGTATTAATTTGAGCCACCTTTCGCTGTTAGTGGAATCAAATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCGGAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGAAGATGAATTTCAAGGAGGTTTCCTTTTTGTTTTGCCCTAGGGATCAAAATGTTGTTGCTGATCTGTTGGCGCGCATGGCTATCCCTTCCCCTCCCCTTATTCCCGCGTTGGAATCCTCTCCCATGGTGGAAGAAGGAGTGGGTTTTTGGTATGGGCCTCCCCCATCTAGCATTAAAGGCATCTTAAAGGAGGTTGGTGTATCCAATTTTATTTTTCCTTAA

Coding sequence (CDS)

ATGCTGGAGGCGAAGGCTGTCCTTGAAGGCCTGAAATTCACCATTTCGGTTGTTGATTTTGGTATTAATTTGAGCCACCTTTCGCTGTTAGTGGAATCAAATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCGGAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGAAGATGAATTTCAAGGAGGTTTCCTTTTTGTTTTGCCCTAGGGATCAAAATGTTGTTGCTGATCTGTTGGCGCGCATGGCTATCCCTTCCCCTCCCCTTATTCCCGCGTTGGAATCCTCTCCCATGGTGGAAGAAGGAGTGGGTTTTTGGTATGGGCCTCCCCCATCTAGCATTAAAGGCATCTTAAAGGAGGTTGGTGTATCCAATTTTATTTTTCCTTAA

Protein sequence

MLEAKAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRNLKMNFKEVSFLFCPRDQNVVADLLARMAIPSPPLIPALESSPMVEEGVGFWYGPPPSSIKGILKEVGVSNFIFP
Homology
[Close]
BLAST of Lag0035405 vs. NCBI nr
Match: XP_042962749.1 (uncharacterized protein LOC122297028 [Carya illinoinensis])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 0 

Query: 2    LEAKAVLEGLKFTISVVDFGINLSHLSLLVESNAISVVNLLNEEDEDISEISFLIEEIRN 61
            +EA AVL GL+F +    +GIN     L++ES+ + ++N+LN   E +S+ +++I+EIR 
Sbjct: 1041 IEATAVLRGLQFGL---QWGIN----KLVMESDCLFLINVLNSSSECLSDFAYVIDEIRR 1100

Query: 62   LKMNFKEVSFLFCPRDQNVVADLLARMA 90
            ++  F E+SF+   R  N VA  LAR A
Sbjct: 1101 IRSYFHEISFVHVCRQGNNVAHGLARFA 1121

The following BLAST results are available for this feature:
BLAST of Lag0035405 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_042962749.11.1e-0439.77uncharacterized protein LOC122297028 [Carya illinoinensis][more]
BLAST of Lag0035405 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..92
e-value: 2.0E-7
score: 33.0
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..89
e-value: 2.6E-12
score: 46.7
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..87
e-value: 1.46098E-14
score: 63.4872
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035405.1Lag0035405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity