Lag0035384 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035384
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr3: 20663773 .. 20664716 (-)
RNA-Seq Expression	Lag0035384
Synteny	Lag0035384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGATTCGAAACACGGGTCTTCTTAAATTTCCTAGGAGGATGAAGTCAAATCTCGACAGAAGAGAAAAGAGCCTGTACTGTCTTTTCCATCGAGATCATGGGCAATCAACCAAAATTGTATTTAGTTGAAGGATGAAATCGAGGCACTAATCCAGAATGGATATTTAAAGGAGTTCGTCGCCAAAACTAGGGCCAAGGCTGACCAAAGATGGTCGAGACAAAGAAGAACCCCCACGAAAGATCATAACCATCTCTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATCGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTGTCCATCTAATAAAGGCACACCCCCCTTTGGAGTTCATTGAGGCTAAGGCAGCAAGTATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTGGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGAATGATGTCCTCTCTCTAACAGCCTTTAAAGAAATGCAGTTAGAGAGAGATTTTTTAAAGTCAAGCCTTACACCACTTGTAGCGTTTGGAGGAGAAAGAGTGACCCCAGAAGGTAGCATAGAACTTCCGATGACCTTTGGGGATGAATAGAATGCAGTAACAAAAATAATAAACTTCTTAGTTGTGAATTGCATGTCAACCTCAATCCTAGGAAGGCCAACCTTGCATTAAATGAAGGCCATAGCTACGACTTATTATCAGTTGCTGAAGTTTCCAACTCAGAATGGTGTGGGTGTTGTCAAAGAGAGCAGAAGGCATCAAGAGAGTGTTACTGGACAACGCTGAAAGAAGTTAAACCGATGAGGGCTGAGGCCAACAAGAGAATGAACCGAGGCCAAGCAGGGCACACTTCCACTAACAATGAATCTGAACTTATGGAGTTTTAG

mRNA sequence

ATGATGGAGATTCGAAACACGGGTCTTCTTAAATTTCCTAGGAGGATGAAGTCAAATCTCGACAGAAGAGAAAAGAGCCTGAGTTCGTCGCCAAAACTAGGGCCAAGGCTGACCAAAGATGGTCGAGACAAAGAAGAACCCCCACGAAAGATCATAACCATCTCTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATCGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTGTCCATCTAATAAAGGCACACCCCCCTTTGGAGTTCATTGAGGCTAAGGCAGCAAGTATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTGGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGAATGATGTCCTCTCTCTAACAGCCTTTAAAGAAATGCAGTTAGAGAGAGATTTTTTAAAGTCAAGCCTTACACCACTTGTAGCGTTTGGAGGAGAAAGAGTGACCCCAGAAGTTGCTGAAGTTTCCAACTCAGAATGGTGTGGGTGTTGTCAAAGAGAGCAGAAGGCATCAAGAGAGTGTTACTGGACAACGCTGAAAGAAGTTAAACCGATGAGGGCTGAGGCCAACAAGAGAATGAACCGAGGCCAAGCAGGGCACACTTCCACTAACAATGAATCTGAACTTATGGAGTTTTAG

Coding sequence (CDS)

ATGATGGAGATTCGAAACACGGGTCTTCTTAAATTTCCTAGGAGGATGAAGTCAAATCTCGACAGAAGAGAAAAGAGCCTGAGTTCGTCGCCAAAACTAGGGCCAAGGCTGACCAAAGATGGTCGAGACAAAGAAGAACCCCCACGAAAGATCATAACCATCTCTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATCGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTGTCCATCTAATAAAGGCACACCCCCCTTTGGAGTTCATTGAGGCTAAGGCAGCAAGTATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTGGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAAGCTCGAATGATGTCCTCTCTCTAACAGCCTTTAAAGAAATGCAGTTAGAGAGAGATTTTTTAAAGTCAAGCCTTACACCACTTGTAGCGTTTGGAGGAGAAAGAGTGACCCCAGAAGTTGCTGAAGTTTCCAACTCAGAATGGTGTGGGTGTTGTCAAAGAGAGCAGAAGGCATCAAGAGAGTGTTACTGGACAACGCTGAAAGAAGTTAAACCGATGAGGGCTGAGGCCAACAAGAGAATGAACCGAGGCCAAGCAGGGCACACTTCCACTAACAATGAATCTGAACTTATGGAGTTTTAG

Protein sequence

MMEIRNTGLLKFPRRMKSNLDRREKSLSSSPKLGPRLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPLEFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKSSLTPLVAFGGERVTPEVAEVSNSEWCGCCQREQKASRECYWTTLKEVKPMRAEANKRMNRGQAGHTSTNNESELMEF

Homology

[Close]

BLAST of Lag0035384 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-26
Identity = 80/201 (39.80%), Postives = 107/201 (53.23%), Query Frame = 0


Query: 1   MMEIRNTGLLKFPRRMKSNLDRREK----------------------SLSSSPKLG---- 60
           +MEI++  LLK+P RMK++  +R K                       +    + G    
Sbjct: 410 LMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKE 469

Query: 61  ----PRLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIK 120
               P+ T++G   + P R+I TI GGP    S RKRKA  REAR   E   +Y  +   
Sbjct: 470 YVEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTSREQNEVYHAYTTN 529

Query: 121 AHPPLEFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLER 172
               +EF E +A  +  PHNDALV+ L +ANVK+HR+L+DGGSS D++S TA+K M L  
Sbjct: 530 RPVTIEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVDGGSSADIJSWTAYKAMDLXE 589

[Close]

BLAST of Lag0035384 vs. NCBI nr
Match: XP_022158828.1 (uncharacterized protein LOC111025292 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-25
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 36  RLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPL 95
           + T++  + + P R+I TI GGP    S RKRKA  REA+       +Y  +++     +
Sbjct: 51  KATQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVAI 110

Query: 96  EFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKS 155
           EF E +A  +  PHNDALV+TL +AN K+HRIL+DGGSS D++S TA+K M L    LKS
Sbjct: 111 EFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLKS 170

Query: 156 SLTPLVAFGGERVTPE 172
           SL PLV FGGERV P+
Sbjct: 171 SLAPLVGFGGERVFPK 186

[Close]

BLAST of Lag0035384 vs. NCBI nr
Match: XP_022158827.1 (uncharacterized protein LOC111025291 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-25
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 36  RLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPL 95
           + T++  + + P R+I TI GGP    S RKRKA  REA+       +Y  +++     +
Sbjct: 51  KATQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVAI 110

Query: 96  EFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKS 155
           EF E +A  +  PHNDALV+TL +AN K+HRIL+DGGSS D++S TA+K M L    LKS
Sbjct: 111 EFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLKS 170

Query: 156 SLTPLVAFGGERVTPE 172
           SL PLV FGGERV P+
Sbjct: 171 SLAPLVGFGGERVFPK 186

[Close]

BLAST of Lag0035384 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 57  GPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPLEFIEAKAASIHQPHNDALVVT 116
           GP    S RKRKA  REAR       +Y  ++      +EF E +A  +  PHNDALV+T
Sbjct: 3   GPIERESGRKRKANVREARASLGQSEVYHAYVADRSMKIEFSEGEATHVLHPHNDALVIT 62

Query: 117 LMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKSSLTPLVAFGGERVTPE 172
           L +AN K+HRIL+DGGSS D+ SLTA+K M L  + LKSSLTPL+ FGGER+ P+
Sbjct: 63  LKIANAKVHRILVDGGSSTDISSLTAYKAMDLGEEVLKSSLTPLIGFGGERIIPK 117

[Close]

BLAST of Lag0035384 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 35  PRLTKDG-RDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHP 94
           P+ T++G  D + P R+I TI GGP      RKRKA  RE R       +Y   + K   
Sbjct: 72  PKATQNGENDSKSPAREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAKQPA 131

Query: 95  PLEFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFL 154
            +EF E +A  +  PHND LV+TL +AN K+HRIL+DGGSS D++SLTA+K M L     
Sbjct: 132 KIEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGERGR 191

Query: 155 KSSLTPLVAFGGERVTPE 172
           KSS   LV F GERV PE
Sbjct: 192 KSSPASLVRFRGERVIPE 209

[Close]

BLAST of Lag0035384 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-27
Identity = 81/201 (40.30%), Postives = 107/201 (53.23%), Query Frame = 0


Query: 1   MMEIRNTGLLKFPRRMKSNLDRREK----------------------SLSSSPKLG---- 60
           +MEI++  LLK+P RMK++  +R K                       +    + G    
Sbjct: 410 LMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKE 469

Query: 61  ----PRLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIK 120
               P+ T++G   + P R+I TI GGP    S RKRKA  REAR   E   +Y  +   
Sbjct: 470 YVEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTSREQNEVYHAYTTN 529

Query: 121 AHPPLEFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLER 172
               +EF E +A  +  PHNDALV+ L +ANVK+HR+L+DGGSS D+LS TA+K M L  
Sbjct: 530 RPVTIEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVDGGSSADILSWTAYKAMDLXE 589

[Close]

BLAST of Lag0035384 vs. ExPASy TrEMBL
Match: A0A6J1DX67 (uncharacterized protein LOC111025292 OS=Momordica charantia OX=3673 GN=LOC111025292 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.6e-26
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 36  RLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPL 95
           + T++  + + P R+I TI GGP    S RKRKA  REA+       +Y  +++     +
Sbjct: 51  KATQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVAI 110

Query: 96  EFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKS 155
           EF E +A  +  PHNDALV+TL +AN K+HRIL+DGGSS D++S TA+K M L    LKS
Sbjct: 111 EFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLKS 170

Query: 156 SLTPLVAFGGERVTPE 172
           SL PLV FGGERV P+
Sbjct: 171 SLAPLVGFGGERVFPK 186

[Close]

BLAST of Lag0035384 vs. ExPASy TrEMBL
Match: A0A6J1DY78 (uncharacterized protein LOC111025291 OS=Momordica charantia OX=3673 GN=LOC111025291 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.6e-26
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 36  RLTKDGRDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPL 95
           + T++  + + P R+I TI GGP    S RKRKA  REA+       +Y  +++     +
Sbjct: 51  KATQNSENDKSPAREIRTIMGGPIERESGRKRKADVREAKASLGQNEVYHAYIMNQSVAI 110

Query: 96  EFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKS 155
           EF E +A  +  PHNDALV+TL +AN K+HRIL+DGGSS D++S TA+K M L    LKS
Sbjct: 111 EFSEDEATHLLHPHNDALVITLKIANXKVHRILVDGGSSADIISWTAYKAMDLGEKVLKS 170

Query: 156 SLTPLVAFGGERVTPE 172
           SL PLV FGGERV P+
Sbjct: 171 SLAPLVGFGGERVFPK 186

[Close]

BLAST of Lag0035384 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 57  GPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHPPLEFIEAKAASIHQPHNDALVVT 116
           GP    S RKRKA  REAR       +Y  ++      +EF E +A  +  PHNDALV+T
Sbjct: 3   GPIERESGRKRKANVREARASLGQSEVYHAYVADRSMKIEFSEGEATHVLHPHNDALVIT 62

Query: 117 LMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFLKSSLTPLVAFGGERVTPE 172
           L +AN K+HRIL+DGGSS D+ SLTA+K M L  + LKSSLTPL+ FGGER+ P+
Sbjct: 63  LKIANAKVHRILVDGGSSTDISSLTAYKAMDLGEEVLKSSLTPLIGFGGERIIPK 117

[Close]

BLAST of Lag0035384 vs. ExPASy TrEMBL
Match: A0A6J1D8C9 (uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018300 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 35  PRLTKDG-RDKEEPPRKIITISGGPAGGGSSRKRKAIAREARFEPEYRGMYFVHLIKAHP 94
           P+ T++G  D + P R+I TI GGP      RKRKA  RE R       +Y   + K   
Sbjct: 72  PKATQNGENDSKSPAREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAKQPA 131

Query: 95  PLEFIEAKAASIHQPHNDALVVTLMVANVKIHRILIDGGSSNDVLSLTAFKEMQLERDFL 154
            +EF E +A  +  PHND LV+TL +AN K+HRIL+DGGSS D++SLTA+K M L     
Sbjct: 132 KIEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGERGR 191

Query: 155 KSSLTPLVAFGGERVTPE 172
           KSS   LV F GERV PE
Sbjct: 192 KSSPASLVRFRGERVIPE 209

The following BLAST results are available for this feature:

BLAST of Lag0035384 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	2.3e-26	39.80	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022158828.1	2.0e-25	48.53	uncharacterized protein LOC111025292 [Momordica charantia]	[more]
XP_022158827.1	2.0e-25	48.53	uncharacterized protein LOC111025291 [Momordica charantia]	[more]
XP_022146774.1	5.4e-23	52.17	uncharacterized protein LOC111015901 [Momordica charantia]	[more]
XP_022150028.1	1.2e-22	47.83	uncharacterized protein LOC111018300 [Momordica charantia]	[more]

BLAST of Lag0035384 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0035384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	8.7e-27	40.30	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DX67	9.6e-26	48.53	uncharacterized protein LOC111025292 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DY78	9.6e-26	48.53	uncharacterized protein LOC111025291 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CZ14	2.6e-23	52.17	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1D8C9	5.8e-23	47.83	uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Lag0035384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035384.1	Lag0035384.1	mRNA