Lag0035309 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035309
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA-binding protein 39-like
Location	chr3: 18528386 .. 18529493 (+)
RNA-Seq Expression	Lag0035309
Synteny	Lag0035309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGTTGATTCGGAGAGGGATCAAAGAACTGTATTTGCTTATCAGGTTGATGAATTCCTCTGTTATTTCCTTACCTTTCATGTTTCTGTTTATATTATGCTTACCATTTTTGTTCTCCTCTATATTCTTTGTGCAGAGGCCTTTGAAGGCCAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGGTATTTGAAACTTATTACTGAAGAGAAGTATTTGAGTGTTTATTTTTTCTTTTGCTAAAAATTAACAATTAAAGGTATTAGCAGTCCTACTTTCATCTATATAATTTCCATGTGTCATGCCGCTCATACTTGTTCACCTCTATAGCATGTAGAAGCATTTTTGTTGCAATGTTATTGCTACAAACGTTATGATTGCATAGATATTGAGATAGATTTGCTTCGTATTGCAGTTATTGTTCCTCTGCCTTCAGTTTCGAAACTATAATCAATTTCTTCTATCTCAACATTATGTTTATATGGGGTGAGTGAAAATGTATGAGTTCTGTTGTCATCTCATTGATGGCTAAATGGTGCTTTGCCTCGAGTGTAAAGAATGGAAACCTTTATTTCTTATCTCTTTGTTGGCTTCCCAAATAACCTGCTCTCATTGTTCTTGCAAATTTCAGGTTAGAGATGTCCGGTTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTGGTCTTGGGATGAGCAATTTTTATATTGTATGCTTGTGATCTTGTTAATTTGGTTATTCACTTAGTAGTTTTCAAGTATCAAATTTAACTGTATTTTTTTAATGAACTAGCAATGCAAAAATGATGAGGGATGGTGGGAATACTATGCAGTCATGTTTAATCAATTCATGTTGCTTTTTCAAGGTAGATGTCTATTGTTCTCTCTAGTCAACTACTTCTTGGCCAACCTGTAATGGTTAAACCTTCCGAGGCTGAAAAGTATCTTGTTCAATCAAATACGTCGGGGGCCTCTAGTGCAGGGCCATATGGAGCAGTAGACAGAAAACTTTATGTTAGAAATCTACATTTTAACATGACTGAGACTCACCTTATTGAGATCAATTAA

mRNA sequence

ATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGTTGATTCGGAGAGGGATCAAAGAACTGTATTTGCTTATCAGAGGCCTTTGAAGGCCAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGATATTGAGATAGATTTGCTTCGTATTGCAGTTATTGTTCCTCTGCCTTCAGTTAGAGATGTCCGGTTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGTCAACTACTTCTTGGCCAACCTGTAATGGTTAAACCTTCCGAGGCTGAAAAGTATCTTGTTCAATCAAATACGTCGGGGGCCTCTAGTGCAGGGCCATATGGAGCAGTAGACAGAAAACTTTATGTTAGAAATCTACATTTTAACATGACTGAGACTCACCTTATTGAGATCAATTAA

Coding sequence (CDS)

ATGAAGGAAAAGAAAGACATGGTGGAGCCAGAAGTTGATTCGGAGAGGGATCAAAGAACTGTATTTGCTTATCAGAGGCCTTTGAAGGCCAGATGTTTACGAATTCTTTTCAAAAGCGGGAAAGATATTGAGATAGATTTGCTTCGTATTGCAGTTATTGTTCCTCTGCCTTCAGTTAGAGATGTCCGGTTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGTCAACTACTTCTTGGCCAACCTGTAATGGTTAAACCTTCCGAGGCTGAAAAGTATCTTGTTCAATCAAATACGTCGGGGGCCTCTAGTGCAGGGCCATATGGAGCAGTAGACAGAAAACTTTATGTTAGAAATCTACATTTTAACATGACTGAGACTCACCTTATTGAGATCAATTAA

Protein sequence

MKEKKDMVEPEVDSERDQRTVFAYQRPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVRDVRLIMDRNSRRSKGVGQLLLGQPVMVKPSEAEKYLVQSNTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEIN

Homology

[Close]

BLAST of Lag0035309 vs. NCBI nr
Match: XP_022133416.1 (RNA-binding protein 39 isoform X2 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 102/155 (65.81%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKAR---CLRILFKSGKDIEIDLLRIAVIVPLP 60
           MKEKKDMVEPE D ERDQRTVFAYQ PLKA          K+GK                
Sbjct: 217 MKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------------- 276

Query: 61  SVRDVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQS 120
            VRDVRLIMDRNSRRSKGV                  GQLLLGQPVMVKPSEAEK LVQS
Sbjct: 277 -VRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS 336

Query: 121 NTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEI 135
           NTSGAS AGPYGAVDRKLYV NLHFNMTETHL EI
Sbjct: 337 NTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREI 354

[Close]

BLAST of Lag0035309 vs. NCBI nr
Match: XP_038881755.1 (RNA-binding protein 39 isoform X1 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 102/155 (65.81%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKAR---CLRILFKSGKDIEIDLLRIAVIVPLP 60
           MKEKKDMVEPE D ERDQRTVFAYQ PLKA          K+GK                
Sbjct: 211 MKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------------- 270

Query: 61  SVRDVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQS 120
            VRDVRLIMDRNSRRSKGV                  GQLLLGQPVMVKPSEAEK LVQS
Sbjct: 271 -VRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS 330

Query: 121 NTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEI 135
           NTSGAS AGPYGAVDRKLYV NLHFNMTETHL EI
Sbjct: 331 NTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREI 348

[Close]

BLAST of Lag0035309 vs. NCBI nr
Match: XP_022133415.1 (RNA-binding protein 39 isoform X1 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 102/155 (65.81%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKAR---CLRILFKSGKDIEIDLLRIAVIVPLP 60
           MKEKKDMVEPE D ERDQRTVFAYQ PLKA          K+GK                
Sbjct: 217 MKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------------- 276

Query: 61  SVRDVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQS 120
            VRDVRLIMDRNSRRSKGV                  GQLLLGQPVMVKPSEAEK LVQS
Sbjct: 277 -VRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS 336

Query: 121 NTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEI 135
           NTSGAS AGPYGAVDRKLYV NLHFNMTETHL EI
Sbjct: 337 NTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREI 354

[Close]

BLAST of Lag0035309 vs. NCBI nr
Match: XP_038881758.1 (probable RNA-binding protein 23 isoform X3 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 102/155 (65.81%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKAR---CLRILFKSGKDIEIDLLRIAVIVPLP 60
           MKEKKDMVEPE D ERDQRTVFAYQ PLKA          K+GK                
Sbjct: 211 MKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------------- 270

Query: 61  SVRDVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQS 120
            VRDVRLIMDRNSRRSKGV                  GQLLLGQPVMVKPSEAEK LVQS
Sbjct: 271 -VRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS 330

Query: 121 NTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEI 135
           NTSGAS AGPYGAVDRKLYV NLHFNMTETHL EI
Sbjct: 331 NTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREI 348

[Close]

BLAST of Lag0035309 vs. NCBI nr
Match: XP_038881757.1 (RNA-binding protein 39 isoform X2 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 102/155 (65.81%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKAR---CLRILFKSGKDIEIDLLRIAVIVPLP 60
           MKEKKDMVEPE D ERDQRTVFAYQ PLKA          K+GK                
Sbjct: 211 MKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------------- 270

Query: 61  SVRDVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQS 120
            VRDVRLIMDRNSRRSKGV                  GQLLLGQPVMVKPSEAEK LVQS
Sbjct: 271 -VRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS 330

Query: 121 NTSGASSAGPYGAVDRKLYVRNLHFNMTETHLIEI 135
           NTSGAS AGPYGAVDRKLYV NLHFNMTETHL EI
Sbjct: 331 NTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREI 348

[Close]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 55/151 (36.42%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVR 60
           ++E  D + PE   ERD RTVF  Q   + R         +D+E           +  VR
Sbjct: 138 VREPIDNLTPE---ERDARTVFCMQLAARIR--------PRDLE------EFFSTVGKVR 197

Query: 61  DVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEK--YLVQSN 120
           DVR+I DRNSRRSKG+                  GQ +LG P++V+ S+AEK      +N
Sbjct: 198 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 257

Query: 121 TSGASSAGPYGAVDRKLYVRNLHFNMTETHL 132
                SAGP      +LYV +LHFN+TE  L
Sbjct: 258 NLQKGSAGP-----MRLYVGSLHFNITEDML 266

[Close]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 55/151 (36.42%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVR 60
           ++E  D + PE   ERD RTVF  Q   + R         +D+E           +  VR
Sbjct: 138 VREPIDNLTPE---ERDARTVFCMQLAARIR--------PRDLE------EFFSTVGKVR 197

Query: 61  DVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEK--YLVQSN 120
           DVR+I DRNSRRSKG+                  GQ +LG P++V+ S+AEK      +N
Sbjct: 198 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 257

Query: 121 TSGASSAGPYGAVDRKLYVRNLHFNMTETHL 132
                SAGP      +LYV +LHFN+TE  L
Sbjct: 258 NLQKGSAGP-----MRLYVGSLHFNITEDML 266

[Close]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 55/151 (36.42%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVR 60
           ++E  D + PE   ERD RTVF  Q   + R         +D+E           +  VR
Sbjct: 138 VREPIDNLTPE---ERDARTVFCMQLAARIR--------PRDLE------EFFSTVGKVR 197

Query: 61  DVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEK--YLVQSN 120
           DVR+I DRNSRRSKG+                  GQ +LG P++V+ S+AEK      +N
Sbjct: 198 DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN 257

Query: 121 TSGASSAGPYGAVDRKLYVRNLHFNMTETHL 132
                SAGP      +LYV +LHFN+TE  L
Sbjct: 258 NLQKGSAGP-----MRLYVGSLHFNITEDML 266

[Close]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-10
Identity = 54/151 (35.76%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 1   MKEKKDMVEPEVDSERDQRTVFAYQRPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVR 60
           ++E  D + PE   ERD RTVF  Q   + R         +D+E     +        VR
Sbjct: 151 VREPVDNLSPE---ERDARTVFCMQLAARIR--------PRDLEDFFSAVG------KVR 210

Query: 61  DVRLIMDRNSRRSKGV------------------GQLLLGQPVMVKPSEAEK--YLVQSN 120
           DVR+I DRNSRRSKG+                  GQ LLG P++V+ S+AEK      +N
Sbjct: 211 DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMAN 270

Query: 121 TSGASSAGPYGAVDRKLYVRNLHFNMTETHL 132
                + GP      +LYV +LHFN+TE  L
Sbjct: 271 NLQKGNGGP-----MRLYVGSLHFNITEDML 279

[Close]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 41/136 (30.15%), Postives = 59/136 (43.38%), Query Frame = 0


Query: 13  DSERDQRTVFAYQ--RPLKARCLRILFKSGKDIEIDLLRIAVIVPLPSVRDVRLIMDRNS 72
           + ERD+RTVF  Q    L +R L   F+                    VRD +++ D+ S
Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQA----------------GPVRDAQIVRDKIS 293

Query: 73  RRSKGV------------------GQLLLGQPVMVKPSEAEKYLVQSNTSGASSAGPYGA 129
            RSKGV                  G+ LLG PV+V+ +EAEK       +  + A     
Sbjct: 294 GRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEI 353

The following BLAST results are available for this feature:

BLAST of Lag0035309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133416.1	9.1e-39	65.81	RNA-binding protein 39 isoform X2 [Momordica charantia]	[more]
XP_038881755.1	9.1e-39	65.81	RNA-binding protein 39 isoform X1 [Benincasa hispida]	[more]
XP_022133415.1	9.1e-39	65.81	RNA-binding protein 39 isoform X1 [Momordica charantia]	[more]
XP_038881758.1	9.1e-39	65.81	probable RNA-binding protein 23 isoform X3 [Benincasa hispida]	[more]
XP_038881757.1	9.1e-39	65.81	RNA-binding protein 39 isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0035309 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14498	4.1e-10	36.42	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
Q8VH51	4.1e-10	36.42	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
Q5RC80	4.1e-10	36.42	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q86U06	7.0e-10	35.76	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]
O13845	2.0e-04	30.15	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..134
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..134
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 58..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035309.1	Lag0035309.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding