Lag0035270 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035270
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNucleotid_trans domain-containing protein
Locationchr3: 17836366 .. 17837628 (-)
RNA-Seq ExpressionLag0035270
SyntenyLag0035270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGTCTCCCACTCTTCGCCACCGTCGTGCCAGAGAAAGTTGCAAGACTCGACGATGACATCTCCAAATTGACGCTCGAATCCTCGTCGATTACCTCCAAGAGAAGCTCGGCGTTTTCGCTGCCACCTTCGCCCCTGTCGCTGTTGCAGTCACGCCCGACGTTGCTGTCGGCGAAGACGATGTGGTCGCTGCCGAGGAGGAGAAGATGGAGTTCGATGTTGTTAATAAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCAAAGGAGTTGATTGAAGGTTTGTTGAAGAAGTTTAAGTAAGGGGTTTCGGAGGAAGAGGCAGAGGATGCGAAGAAGCAGCTTGAAAAGGCTGGTGTGAATATTGTTATTTTTTTATTTGGCTGGTTAGTTTCTTGAATACTTAAGGTTTACTTACAATTTAGGCATTCTGGTGGAATTAGATATGGGCTTTTTTTAAAAAAAAAAAATTTATTTTTAACTGGTGAAGAATTTAGTTTAAATTTCATTAATGAATGCCTTCTTTTTCTTGAATTTGCCATTGTTGTGGCTCTGTTTGCATGCTTTGTTCTGTTGATTTTTCTTGCTCACAATGTGTTTGTCAAAATGCCAACAAGAAGCTTTGCTTAGGAACCTCCACTTTTTGCCTCGACCCTTTGTATTTTAAAGTGCTTTGGCATCATATTAGTCATGATATGAGCCATGTAAATGTATCCTCATTGATCTACTTAATGAACTAACCATCAAATTACAATGGCAAGCAATGTATCAACAATTTAGATTTGAGGTATGTTGTTCATACTACATTCCAGTAGGCGGGTACTGAAGGAAAGCGCCACAAACTGCGTGAGGCCATGGTTTTCTATGATCCTCCAGAATACTTTGATGCACCAGGTAAATTTTGTATGAGATGCGTGGATCATTCTTTTCTACTGCATGATGCACATCATTTTCCAAATCTCATGCGTAAAGGAGTTGAAGAATCCAAGTCATTCTGATTTGTTGTTCCTCACCTTTGAAAAGATTTTATCAGTTTATGTGCTTTTGTGTTACCTCCACATGGGTCATAACCGAATAAACTTGGAGTTGGTGTTTCTTGAAAGATTTTTAAATTTAGTTGTGGCTTCCTGATCACAACTGAATAGTTTGCCCCACTTTTGAAGATATTATGTGTCTGATGCGTTGATGTTTAGTAATCTTATTTTCTTGGGAAATTCTGCAGGAGTTACCTGTCATTTAAGATATCTATTCCTAAGAACATAA

mRNA sequence

ATGACTAGTCTCCCACTCTTCGCCACCGTCGTGCCAGAGAAAGTTGCAAGACTCGACGATGACATCTCCAAATTGACGCTCGAATCCTCGTCGATTACCTCCAAGAGAAGCTCGGCGTTTTCGCTGCCACCTTCGCCCCTGTCGCTGTTGCAGTCACGCCCGACGTTGCTGTCGGCGAAGACGATGTGGTCGCTGCCGAGGAGGAGAAGATGGAGTTCGATGTTGTTAATAAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCAAAGGAGTTGATTGAAGGAAAGCGCCACAAACTGCGTGAGGCCATGGTTTTCTATGATCCTCCAGAATACTTTGATGCACCAGGAGTTACCTGTCATTTAAGATATCTATTCCTAAGAACATAA

Coding sequence (CDS)

ATGACTAGTCTCCCACTCTTCGCCACCGTCGTGCCAGAGAAAGTTGCAAGACTCGACGATGACATCTCCAAATTGACGCTCGAATCCTCGTCGATTACCTCCAAGAGAAGCTCGGCGTTTTCGCTGCCACCTTCGCCCCTGTCGCTGTTGCAGTCACGCCCGACGTTGCTGTCGGCGAAGACGATGTGGTCGCTGCCGAGGAGGAGAAGATGGAGTTCGATGTTGTTAATAAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCAAAGGAGTTGATTGAAGGAAAGCGCCACAAACTGCGTGAGGCCATGGTTTTCTATGATCCTCCAGAATACTTTGATGCACCAGGAGTTACCTGTCATTTAAGATATCTATTCCTAAGAACATAA

Protein sequence

MTSLPLFATVVPEKVARLDDDISKLTLESSSITSKRSSAFSLPPSPLSLLQSRPTLLSAKTMWSLPRRRRWSSMLLIRALTSLALKEAKELIEGKRHKLREAMVFYDPPEYFDAPGVTCHLRYLFLRT
Homology
[Close]
BLAST of Lag0035270 vs. NCBI nr
Match: KAE8717230.1 (hypothetical protein F3Y22_tig00110057pilonHSYRG00292 [Hibiscus syriacus])

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPGVTCHLRYLFLR 128
           EGKRH+LREAMVFYDPPEY+DA   +CHL +LF R
Sbjct: 304 EGKRHRLREAMVFYDPPEYYDAREDSCHLNHLFQR 338

[Close]
BLAST of Lag0035270 vs. NCBI nr
Match: KAG7031650.1 (Arabinosyltransferase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPGVTC 120
           EGKRH+LREAMVFYDPPEYFD PG  C
Sbjct: 374 EGKRHRLREAMVFYDPPEYFDTPGKFC 400

[Close]
BLAST of Lag0035270 vs. NCBI nr
Match: XP_008444233.1 (PREDICTED: arabinosyltransferase XEG113 [Cucumis melo] >KAA0052240.1 arabinosyltransferase [Cucumis melo var. makuwa] >TYK01803.1 arabinosyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPG 117
           EGKRH+LREAMVFYDPPEYFDAPG
Sbjct: 373 EGKRHRLREAMVFYDPPEYFDAPG 396

[Close]
BLAST of Lag0035270 vs. NCBI nr
Match: KAF3454207.1 (hypothetical protein FNV43_RR04654 [Rhamnella rubrinervis])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPG 117
           EGKRH+LREAMVFYDPPEYFDAPG
Sbjct: 372 EGKRHRLREAMVFYDPPEYFDAPG 395

[Close]
BLAST of Lag0035270 vs. NCBI nr
Match: XP_022140507.1 (arabinosyltransferase XEG113 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPG 117
           EGKRH+LREAMVFYDPPEYFDAPG
Sbjct: 374 EGKRHRLREAMVFYDPPEYFDAPG 397

[Close]
BLAST of Lag0035270 vs. ExPASy Swiss-Prot
Match: Q8VXZ5 (Arabinosyltransferase XEG113 OS=Arabidopsis thaliana OX=3702 GN=XEG113 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-06
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 93  EGKRHKLREAMVFYDPPEYFDAPG 117
           EGKRH+LRE MVFYDPPEY+D+PG
Sbjct: 377 EGKRHRLREGMVFYDPPEYYDSPG 400

The following BLAST results are available for this feature:
BLAST of Lag0035270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8717230.14.3e-0674.29hypothetical protein F3Y22_tig00110057pilonHSYRG00292 [Hibiscus syriacus][more]
KAG7031650.11.4e-0485.19Arabinosyltransferase [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_008444233.12.4e-0495.83PREDICTED: arabinosyltransferase XEG113 [Cucumis melo] >KAA0052240.1 arabinosylt... [more]
KAF3454207.12.4e-0495.83hypothetical protein FNV43_RR04654 [Rhamnella rubrinervis][more]
XP_022140507.12.4e-0495.83arabinosyltransferase XEG113 [Momordica charantia][more]
BLAST of Lag0035270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VXZ54.5e-0683.33Arabinosyltransferase XEG113 OS=Arabidopsis thaliana OX=3702 GN=XEG113 PE=2 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035270.1Lag0035270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane