Lag0035227 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035227
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	chr3: 17078639 .. 17080615 (+)
RNA-Seq Expression	Lag0035227
Synteny	Lag0035227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAAGCCATCTGCTTCACAAAGAAAGAACACAATTCTTCTGCTATTCTAAGAACCTGCCGCTGCCTTCCACTACTGCTTCTGTACCACCAAACACCAAAAAAACCACCACTCCACGTTACTGCTCTCGGTAAGCATAACTGAACAAATAATGATGTGGGCCAATATTCTACAAAATTGTTTGGACAAAATATTTGGGCCTTTTACAACATAATAATTTAAGCCCAATAATGATGGATATGCTGGAGTCACGTTCAACAGTTATTTTTCGAGTTGCTCTATTGATACATTTAACCATTTACCTTGTTACCCCAGATTAATATATATAAAAGTTGTAGTACTAAATAAATATTTAGTTTTTATCAATAAATAAATAAATATTTAGTCTTTTACTTCATGGAATTAAACTTGAAAGACATGGATAAGTATGACAAATTTCATAAACTTAAATCATTTAAATAAATATTCTCATGTGCATTTGATGAATTATAAAATATATATTTGATACAAAATTATTCGAGCTTCATAGAAAGAAAACGCTAGAGTGAGATTTTTATTAAACTTTATGAATTTTGAGACATTTATTGTGATCGGATGATTTTTGTTTAATAATCAATACTTAATTTCGTTCCAAACTTGATTTTTTCATTGAAATTAGTTGGTTTTAGAAGATTTTCACCCTACATCATAATTAAATTTAGTAGAACACAATCAACCTAGTAGAATTGAAACATAGGGACAAAAATTACTAACACTCGTCTAAATTCAGTTTTATCATTTTAAACAAACATAAGTACATTTTTCAAGTGATTGTCTCGTGAGATTAGTTGAGGTGTGTATAAGCTGGTCTAGACACTGATATCAAAAAAAAAAAAAAAAAAACATAAGTATAATTCAACCGTTAAGGTATTACTAACTTTCTTTGAGATTAAAAGTTCAAATCTCAACCGACTTATATTCCTTATCTAAAGATTTTTAAAAAATAGCTTTTGTCAGTTTAGGTTTAATTATATTTTATTCCCATTATTTTAATACTCTGTTCCTAATTACGTATTTCTTACAAGCCACAGGCTCGCAGTCGCAGCTGATTAATGATGTCGGATGCCTTTATTTTAAAGCAAAGAAATCTACTGAATCAGATTTTTCACATAATCACATCTCACACATTCATTCTCAGCCGAAAGCCCATTTCAAAGATTTACTAAAATTTTCTCTCTTTTTTTTAACATTAAATCGAAAAACATTCCGCCAATTCCACCAATTCCACCAATTCCAGCCATGGGCTTTGTGCTTCACTCACCATCAACATCAAAATCTCACCTCTAAACCCTCCATTTTCACAATTTTTCTCCCAAATTCGAAGACCCCATCTCAAATCTCTCTATGAAAAGATCTCCAACAATCCCCTCCAAGTTTATGTTCCCAATTCAACCCCATCTCTCAAAACCCATTTCATGTTCTGAATCGATCTCTTCCTCAAGTTACTAAAACCCCATTTCTCACTGCTCAACAGTTCGAATTCCTTTGCAGTTGCATGATGTCTAGATATGGCGCCGGATTCTCCCTCGTTTTGCTGCTTTTTCTCGCTGGTTTGGCGACTGGGAATGAAATGAGCTTCACGCAAGTGAGTTCCCTTTTGAGCATTTCCTCTAATTCATTGATCCCATTTGCTTTTTTCTGAGTTTAATTTGATGGGGTTTGTTGATTGTTTTGATTCTCAGTCAAATGGGTCTGTAGCAGAGATGGTGCCACTGATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAAACTGGGGAGCTTCCAAATATGTGCTCCTTGCACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCCAACAGGCCATTTGGTTTCTGCTCATTCACTCCCAAATCCTGTAATTGCTTTGGATGCAATATCTAG

mRNA sequence

ATGCCCACAAGCCATCTGCTTCACAAAGAAAGAACACAATTCTTCTGCTATTCTAAGAACCTGCCGCTGCCTTCCACTACTGCTTCTGTACCACCAAACACCAAAAAAACCACCACTCCACGTTACTGCTCTCGTTGCATGATGTCTAGATATGGCGCCGGATTCTCCCTCGTTTTGCTGCTTTTTCTCGCTGGTTTGGCGACTGGGAATGAAATGAGCTTCACGCAATCAAATGGGTCTGTAGCAGAGATGGTGCCACTGATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAAACTGGGGAGCTTCCAAATATGTGCTCCTTGCACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCCAACAGGCCATTTGGTTTCTGCTCATTCACTCCCAAATCCTGTAATTGCTTTGGATGCAATATCTAG

Coding sequence (CDS)

ATGCCCACAAGCCATCTGCTTCACAAAGAAAGAACACAATTCTTCTGCTATTCTAAGAACCTGCCGCTGCCTTCCACTACTGCTTCTGTACCACCAAACACCAAAAAAACCACCACTCCACGTTACTGCTCTCGTTGCATGATGTCTAGATATGGCGCCGGATTCTCCCTCGTTTTGCTGCTTTTTCTCGCTGGTTTGGCGACTGGGAATGAAATGAGCTTCACGCAATCAAATGGGTCTGTAGCAGAGATGGTGCCACTGATTGAGGAAGGGAAAATGAATATGATGGAGATGAATGAGACTAGAAGGAAACTGGGGAGCTTCCAAATATGTGCTCCTTGCACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCCAACAGGCCATTTGGTTTCTGCTCATTCACTCCCAAATCCTGTAATTGCTTTGGATGCAATATCTAG

Protein sequence

MPTSHLLHKERTQFFCYSKNLPLPSTTASVPPNTKKTTTPRYCSRCMMSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI

Homology

[Close]

BLAST of Lag0035227 vs. NCBI nr
Match: XP_038879730.1 (uncharacterized protein LOC120071488 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 5.6e-56
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 47  MMSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLG 106
           MMS YGAGF LV LLFLAGLATGNE+SFTQSNGSVAEMVPLIEEGKM ++EMNETRRKLG
Sbjct: 2   MMSSYGAGFFLVFLLFLAGLATGNELSFTQSNGSVAEMVPLIEEGKMKIIEMNETRRKLG 61

Query: 107 SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 160
           SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 62  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 114

[Close]

BLAST of Lag0035227 vs. NCBI nr
Match: XP_022988273.1 (uncharacterized protein LOC111485573 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 7.4e-56
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 47  MMSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLG 106
           M+SRYGAGFSLV LLFLA  ATGNE+SFTQSNGSVA MVPLIEEGKM MMEMNETRRKLG
Sbjct: 2   MLSRYGAGFSLVFLLFLADFATGNELSFTQSNGSVAAMVPLIEEGKMTMMEMNETRRKLG 61

Query: 107 SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 160
           SFQ+CAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 62  SFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 114

[Close]

BLAST of Lag0035227 vs. NCBI nr
Match: XP_004142564.1 (uncharacterized protein LOC101221700 [Cucumis sativus] >KGN66680.1 hypothetical protein Csa_007449 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 9.6e-56
Identity = 104/113 (92.04%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 47  MMSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLG 106
           MMS YGAGFS + LLFLA LATGN++SFTQSNGSVAEMVPLIEEGKMNMMEMNETRR+LG
Sbjct: 4   MMSSYGAGFSFLFLLFLAVLATGNQLSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRRLG 63

Query: 107 SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 160
           SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Lag0035227 vs. NCBI nr
Match: XP_008443711.1 (PREDICTED: uncharacterized protein LOC103487235 isoform X1 [Cucumis melo] >ADN33846.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 47  MMSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLG 106
           MMS YGAGFS + LLFL  LATGNE+SFTQSNGSVAEMVPLIEEGKMN+MEMNETRR+LG
Sbjct: 4   MMSSYGAGFSFLFLLFLTVLATGNELSFTQSNGSVAEMVPLIEEGKMNVMEMNETRRRLG 63

Query: 107 SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 160
           SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 64  SFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 116

[Close]

BLAST of Lag0035227 vs. NCBI nr
Match: KAG6590092.1 (hypothetical protein SDJN03_15515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 48  MSRYGAGFSLVLLLFLAGLATGNEMSFTQSNGSVAEMVPLIEEGKMNMMEMNETRRKLGS 107
           MSRYGAGFSLV+LLFLA LATGNE+SFTQSNGS A MVPLIEEG+M MMEMNETRRKLGS
Sbjct: 1   MSRYGAGFSLVVLLFLADLATGNELSFTQSNGSEAAMVPLIEEGEMTMMEMNETRRKLGS 60

Query: 108 FQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNI 160
           FQ+CAPCTCCGGAKGLC PSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCN+
Sbjct: 61  FQVCAPCTCCGGAKGLCFPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 112

The following BLAST results are available for this feature:

BLAST of Lag0035227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879730.1	5.6e-56	92.92	uncharacterized protein LOC120071488 [Benincasa hispida]	[more]
XP_022988273.1	7.4e-56	92.04	uncharacterized protein LOC111485573 [Cucurbita maxima]	[more]
XP_004142564.1	9.6e-56	92.04	uncharacterized protein LOC101221700 [Cucumis sativus] >KGN66680.1 hypothetical ...	[more]
XP_008443711.1	3.7e-55	91.15	PREDICTED: uncharacterized protein LOC103487235 isoform X1 [Cucumis melo] >ADN33...	[more]
KAG6590092.1	1.1e-54	91.07	hypothetical protein SDJN03_15515, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0035227 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 54..158
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 54..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035227.1	Lag0035227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity