Lag0035035 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035035
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function, DUF538
Location	chr3: 13913856 .. 13914350 (-)
RNA-Seq Expression	Lag0035035
Synteny	Lag0035035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTCTCCAGAGCCCTCTCCCCTTTCTCACTGTTCCTTCTAATTCTCGCCATTTCCGCTCAAACCCACCTCTCCTTTTCCATAAGGGATACTCCCCTCGAGTCAACAGACATCCACGAACTTCTGCCCCTTTACGGTTTCCCAAAGGGTCTCTTACCCAACAATGTCAAGTCCTACACTCTCTCAGACGACGGCAGCTTCGAAATCGAACTCGAAAGCGAGTGTTATGTGAGGTTCGATTTGCTGGTCTATTACGATAAGAAAATCAAGGGGAAATTGAGCTATGGGTCTGTGGCGGATGTTTCTGGAATTCAAGCGGAGAAGCTGTTCTTGTGGGTCTCTGTTACTGGAATCAAGGCCAATCAGGGCTCCGAAACGATCGATTTTTATGTTGGGATTTTGTCTGAGACTTTGCCGGCCCAACAGTTCCAGCAGATTCCTGCATGTAGAAGGAAGGCTTGTCTAGAAGAAAGAACAGAGGCCATGTGA

mRNA sequence

ATGGCTTCCTTCTCCAGAGCCCTCTCCCCTTTCTCACTGTTCCTTCTAATTCTCGCCATTTCCGCTCAAACCCACCTCTCCTTTTCCATAAGGGATACTCCCCTCGAGTCAACAGACATCCACGAACTTCTGCCCCTTTACGGTTTCCCAAAGGGTCTCTTACCCAACAATGTCAAGTCCTACACTCTCTCAGACGACGGCAGCTTCGAAATCGAACTCGAAAGCGAGTGTTATGTGAGGTTCGATTTGCTGGTCTATTACGATAAGAAAATCAAGGGGAAATTGAGCTATGGGTCTGTGGCGGATGTTTCTGGAATTCAAGCGGAGAAGCTGTTCTTGTGGGTCTCTGTTACTGGAATCAAGGCCAATCAGGGCTCCGAAACGATCGATTTTTATGTTGGGATTTTGTCTGAGACTTTGCCGGCCCAACAGTTCCAGCAGATTCCTGCATGTAGAAGGAAGGCTTGTCTAGAAGAAAGAACAGAGGCCATGTGA

Coding sequence (CDS)

ATGGCTTCCTTCTCCAGAGCCCTCTCCCCTTTCTCACTGTTCCTTCTAATTCTCGCCATTTCCGCTCAAACCCACCTCTCCTTTTCCATAAGGGATACTCCCCTCGAGTCAACAGACATCCACGAACTTCTGCCCCTTTACGGTTTCCCAAAGGGTCTCTTACCCAACAATGTCAAGTCCTACACTCTCTCAGACGACGGCAGCTTCGAAATCGAACTCGAAAGCGAGTGTTATGTGAGGTTCGATTTGCTGGTCTATTACGATAAGAAAATCAAGGGGAAATTGAGCTATGGGTCTGTGGCGGATGTTTCTGGAATTCAAGCGGAGAAGCTGTTCTTGTGGGTCTCTGTTACTGGAATCAAGGCCAATCAGGGCTCCGAAACGATCGATTTTTATGTTGGGATTTTGTCTGAGACTTTGCCGGCCCAACAGTTCCAGCAGATTCCTGCATGTAGAAGGAAGGCTTGTCTAGAAGAAAGAACAGAGGCCATGTGA

Protein sequence

MASFSRALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDDGSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGSETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM

Homology

[Close]

BLAST of Lag0035035 vs. NCBI nr
Match: XP_023006181.1 (uncharacterized protein LOC111498989 [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 134/158 (84.81%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 7   ALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDD 66
           +LSPFSL LLIL I+AQTH++ S+RD  L STDIHELLPLYGFPKGLLPNNVKSYTLSDD
Sbjct: 3   SLSPFSLLLLILTITAQTHVASSVRDIALNSTDIHELLPLYGFPKGLLPNNVKSYTLSDD 62

Query: 67  GSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGS 126
           GSFEIELESECYV+FDLLVYY+K +KGKLSYGSVADVSGIQA+KLFLWVSVTGI+ANQGS
Sbjct: 63  GSFEIELESECYVKFDLLVYYEKIVKGKLSYGSVADVSGIQAKKLFLWVSVTGIEANQGS 122

Query: 127 ETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM 165
            TIDFYVG+LSETLPAQQFQ+IPAC RKAC  E TEAM
Sbjct: 123 GTIDFYVGVLSETLPAQQFQKIPACTRKACFGEGTEAM 160

[Close]

BLAST of Lag0035035 vs. NCBI nr
Match: XP_022933750.1 (uncharacterized protein LOC111441073 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 3.9e-68
Identity = 134/158 (84.81%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 7   ALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDD 66
           +LSPFSL LLIL I AQTHL+ S+RD  L STDIHELLPLYGFPKGLLPNNVKSYTLS D
Sbjct: 3   SLSPFSLLLLILTIIAQTHLASSVRDIALNSTDIHELLPLYGFPKGLLPNNVKSYTLSAD 62

Query: 67  GSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGS 126
           GSFEIELESECYV+FDLLVYYDK +KGKL YGSVADVSGIQA+KLFLWVSVTGIKANQGS
Sbjct: 63  GSFEIELESECYVKFDLLVYYDKIVKGKLRYGSVADVSGIQAKKLFLWVSVTGIKANQGS 122

Query: 127 ETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM 165
            TIDFYVG+LSETLPAQQFQ+IPAC R+ C+ ERTEAM
Sbjct: 123 GTIDFYVGVLSETLPAQQFQKIPACTREGCVGERTEAM 160

[Close]

BLAST of Lag0035035 vs. NCBI nr
Match: KAG7022156.1 (hypothetical protein SDJN02_15885, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 5.1e-68
Identity = 134/158 (84.81%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 7   ALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDD 66
           +LSPFSL LLIL I+AQTHL+ S RD  L STDIHELLPLYGFPKGLLPNNVKSYTLS D
Sbjct: 3   SLSPFSLLLLILTITAQTHLASSARDIALNSTDIHELLPLYGFPKGLLPNNVKSYTLSAD 62

Query: 67  GSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGS 126
           GSFEIELESECYV+FDLLVYYDK +KGKL YGSVADVSGIQA+KLFLWVSVTGIKANQGS
Sbjct: 63  GSFEIELESECYVKFDLLVYYDKIVKGKLRYGSVADVSGIQAKKLFLWVSVTGIKANQGS 122

Query: 127 ETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM 165
            TIDFYVG+LSETLPAQQFQ+IPAC R+ C+ ERTEAM
Sbjct: 123 GTIDFYVGVLSETLPAQQFQKIPACTREGCVGERTEAM 160

[Close]

BLAST of Lag0035035 vs. NCBI nr
Match: XP_023531629.1 (uncharacterized protein LOC111793813 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 6.6e-68
Identity = 134/158 (84.81%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 7   ALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDD 66
           +LS FSL LLIL I+AQTHL+ S+RD  L STDIHELLPLYGFPKGLLPNNVKSYTLS D
Sbjct: 3   SLSRFSLLLLILTITAQTHLASSVRDIALNSTDIHELLPLYGFPKGLLPNNVKSYTLSAD 62

Query: 67  GSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGS 126
           GSFEIELESECYV+FDLLVYYDK +KGKL YGSVADVSGI+A+KLFLWVSVTGI+ANQGS
Sbjct: 63  GSFEIELESECYVKFDLLVYYDKIVKGKLRYGSVADVSGIEAKKLFLWVSVTGIEANQGS 122

Query: 127 ETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM 165
            TIDFYVG+LSETLPAQQFQ+IPAC RKACL ERTEAM
Sbjct: 123 GTIDFYVGVLSETLPAQQFQKIPACTRKACLGERTEAM 160

[Close]

BLAST of Lag0035035 vs. NCBI nr
Match: KAG6588240.1 (hypothetical protein SDJN03_16805, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-67
Identity = 132/158 (83.54%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 7   ALSPFSLFLLILAISAQTHLSFSIRDTPLESTDIHELLPLYGFPKGLLPNNVKSYTLSDD 66
           +LSPFSL LLIL I+AQTH++ S RD  L STDIHELLPLYGFPKGLLPNNVKSYTLS D
Sbjct: 3   SLSPFSLLLLILTITAQTHVASSARDIALNSTDIHELLPLYGFPKGLLPNNVKSYTLSAD 62

Query: 67  GSFEIELESECYVRFDLLVYYDKKIKGKLSYGSVADVSGIQAEKLFLWVSVTGIKANQGS 126
           GSFEIELESECYV+FDLLVYYDK +KGKL YGSVADVSGIQA+KLFLWVSVTGIKANQGS
Sbjct: 63  GSFEIELESECYVKFDLLVYYDKIVKGKLRYGSVADVSGIQAKKLFLWVSVTGIKANQGS 122

Query: 127 ETIDFYVGILSETLPAQQFQQIPACRRKACLEERTEAM 165
            TIDFYVG+LSETLPAQQFQ+IP C R+ C+ ERTEAM
Sbjct: 123 GTIDFYVGVLSETLPAQQFQKIPGCTREGCVGERTEAM 160

The following BLAST results are available for this feature:

BLAST of Lag0035035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006181.1	1.0e-68	84.81	uncharacterized protein LOC111498989 [Cucurbita maxima]	[more]
XP_022933750.1	3.9e-68	84.81	uncharacterized protein LOC111441073 [Cucurbita moschata]	[more]
KAG7022156.1	5.1e-68	84.81	hypothetical protein SDJN02_15885, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023531629.1	6.6e-68	84.81	uncharacterized protein LOC111793813 [Cucurbita pepo subsp. pepo]	[more]
KAG6588240.1	3.3e-67	83.54	hypothetical protein SDJN03_16805, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0035035 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 41..146 e-value: 2.0E-30 score: 105.5
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 14..161
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 27..153 e-value: 1.4E-31 score: 111.0
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 14..153
None	No IPR available	PANTHER	PTHR31676:SF96	EXPRESSED PROTEIN	coord: 14..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035035.1	Lag0035035.1	mRNA