Lag0035006 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0035006
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionATP synthase epsilon chain, chloroplastic
Locationchr3: 13529361 .. 13529666 (+)
RNA-Seq ExpressionLag0035006
SyntenyLag0035006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAATCCTCCCCCGACGAGTTTTTGGAAACTAAATACGGACGCAGCCTGTGTCCCATCCTCTCCGTTGACAGGACTAGGGGCATAGGTGGTTTTGCTAGAATAGACAATAATGAGGTCACTGTTTTAGTAAACGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAACTCATCAAACTCTTGAAATAGTGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTTAGACGAGCTAGGACACGAGTAGAGGCTATCAATGACGTACCTAGTTAA

mRNA sequence

ATGTTGGAATCCTCCCCCGACGAGTTTTTGGAAACTAAATACGGACGCAGCCTGTGTCCCATCCTCTCCGTTGACAGGACTAGGGGCATAGGTGGTTTTGCTAGAATAGACAATAATGAGGTCACTGTTTTAGTAAACGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAACTCATCAAACTCTTGAAATAGTGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTTAGACGAGCTAGGACACGAGTAGAGGCTATCAATGACGTACCTAGTTAA

Coding sequence (CDS)

ATGTTGGAATCCTCCCCCGACGAGTTTTTGGAAACTAAATACGGACGCAGCCTGTGTCCCATCCTCTCCGTTGACAGGACTAGGGGCATAGGTGGTTTTGCTAGAATAGACAATAATGAGGTCACTGTTTTAGTAAACGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAACTCATCAAACTCTTGAAATAGTGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTTAGACGAGCTAGGACACGAGTAGAGGCTATCAATGACGTACCTAGTTAA

Protein sequence

MLESSPDEFLETKYGRSLCPILSVDRTRGIGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRARTRVEAINDVPS
Homology
BLAST of Lag0035006 vs. NCBI nr
Match: YP_009751744.1 (CF1 subunit epsilon [Herpetospermum pedunculosum] >QIT04477.1 CF1 subunit epsilon [Herpetospermum pedunculosum] >QJR52962.1 ATP synthase CF1 epsilon subunit [Herpetospermum pedunculosum])

HSP 1 Score: 124.0 bits (310), Expect = 7.3e-25
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVTVLVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 65  MGGFARIGNNEVTVLVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 124

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 125 RTRVEAINGVPS 136

BLAST of Lag0035006 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-25
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 65  MGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 124

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 125 RTRVEAINGVPS 136

BLAST of Lag0035006 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-25
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 65  MGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 124

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 125 RTRVEAINGVPS 136

BLAST of Lag0035006 vs. NCBI nr
Match: ALO22128.1 (AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia] >QZL38791.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia])

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-25
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 67  MGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 126

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 127 RTRVEAINGVPS 138

BLAST of Lag0035006 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 123.6 bits (309), Expect = 9.5e-25
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 65  MGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 124

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 125 RTRVEAINGVPS 136

BLAST of Lag0035006 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNEVT+LVNDAEKASDIDPQE  QTLEI EANLRKAQGKRQTIEANLALRRA
Sbjct: 65  MGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRA 124

Query: 90  RTRVEAINDVPS 102
           RTRVEAIN VPS
Sbjct: 125 RTRVEAINGVPS 136

BLAST of Lag0035006 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-25
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNE+T+LVNDAEK SDIDPQE  QTLEI EANLRKA+GKRQTIEANLALRRA
Sbjct: 63  MGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLALRRA 122

Query: 90  RTRVEAINDV 100
           RTRVEA+N +
Sbjct: 123 RTRVEALNTI 132

BLAST of Lag0035006 vs. ExPASy Swiss-Prot
Match: Q2PMU9 (ATP synthase epsilon chain, chloroplastic OS=Glycine max OX=3847 GN=atpE PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI+NNE+TVLVNDAEK SDIDPQE  QTLEI EANL KA+GKRQTIEANLALRRA
Sbjct: 64  MGGFARINNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLNKAEGKRQTIEANLALRRA 123

Query: 90  RTRVEAIN 98
           RTRVEAIN
Sbjct: 124 RTRVEAIN 131

BLAST of Lag0035006 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNE+T+LVNDAEK SDIDPQE  +TLE+ EANLRKA+GKRQTIEANLALRRA
Sbjct: 63  MGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLALRRA 122

Query: 90  RTRVEAINDV 100
           RTRVEAIN +
Sbjct: 123 RTRVEAINAI 132

BLAST of Lag0035006 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 30  IGGFARIDNNEVTVLVNDAEKASDIDPQETHQTLEIVEANLRKAQGKRQTIEANLALRRA 89
           +GGFARI NNE+T+LVNDAEK SDIDPQE  Q LEI EANLRKA+GKRQTIEANLALRRA
Sbjct: 63  MGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLALRRA 122

Query: 90  RTRVEAINDV 100
           RTRVEAIN +
Sbjct: 123 RTRVEAINAI 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009751744.17.3e-2591.67CF1 subunit epsilon [Herpetospermum pedunculosum] >QIT04477.1 CF1 subunit epsilo... [more]
YP_009752081.19.5e-2590.28CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo... [more]
ASY96329.19.5e-2590.28ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis][more]
ALO22128.19.5e-2590.28AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbi... [more]
YP_004841789.19.5e-2590.28ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ... [more]
Match NameE-valueIdentityDescription
Q4VZG91.2e-2790.28ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
P094687.6e-2582.86ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp... [more]
Q2PMU97.6e-2586.76ATP synthase epsilon chain, chloroplastic OS=Glycine max OX=3847 GN=atpE PE=3 SV... [more]
Q49KZ21.3e-2481.43ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
A0ZZ411.3e-2482.86ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableGENE3D6.10.140.480coord: 56..100
e-value: 4.9E-23
score: 82.4
NoneNo IPR availablePANTHERPTHR13822:SF10ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 30..97
IPR001469ATP synthase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 30..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0035006.1Lag0035006.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism