Lag0034984 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034984
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr3: 13292500 .. 13294320 (+)
RNA-Seq Expression	Lag0034984
Synteny	Lag0034984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGTCCGTTGAAGAATTCGGAGTCGTCAACGGAGGTGTGTTTCTCAATTGCTTAATTTTTTTGCCAATGTACTGGTATTTTATAGAACAAAATTATATTGTGAACGATCCAATTGCTTCCGCTATAACGAAATTAGGAATTCCAATCCTTCACATTCACCATGGCTTTTGATGATTTGCTTGAAAATTGAGAGATATTCAACCTAATTAATGAGGAGGAATCCACTGAAGTTGAGGTTGATCGACATACGACTTTGGTTACTAGTCAATCATTAGACTTTAGCCTAATAGGGAAACTGTCTGCCCCTCGAATTATATCAGGCGATGTGATGCAGCGCCTTCAAGGCGGCTTGGAACATTCCAAACAGTTTATTAGTGGAAAGGATGGGACTAAATCTGTTTCTTTTCTTTATGCAAACGAAAGCTGATCAAACACGTGTTCTGTCAGGGGCCATGGTTTTTTCGATAAATTCCTCATAGCTTTATCGAAACCCACCCCAATGGTGAAGCCTACAGCTATGAAGTTCAAATTTGCACATTTTTTGGTTCATTTTTGTGACCTCCCAATGGATTTATATAATCGATCGATGGCGGAAAGACTGGGCAACGCGATTGGCCAGTTTCAGGAGTACGATAATGGGGGGTGAGGATACGGATGGAAGGAGAGTCTTAGGGTTCGAATTATCCTCGATATCACACGCCCTTTTTTCGTGACATTAAGGTACGTCTTGATGATCCTTTGGGTAGTGTTTGGACTCCTATCAAATATGAGAAGCTACCAGAAATTTGTTCTTATTGCGGCCGAATAGGACACGTTACAAAGAACTTCACTTTTTCCTTTGTTGACGATGGTTCCTCATCTCAGTGCCAAGAATACGGGATGTGGATGTCTTTTACTAGACGATCTTCAAATGTGTTCCGATCTCCGAGTACAAGCCCAATGGGTAATAATAGGATAATGATGGAGGCTTCACCAAATCAAATTGTTTCTCCATCACGCAATCAAGCAGCAAACGCGGGACAAGATGCAGGTCTGGACAACCAACAAAAATCACCTCCGATGACTGGTTCCGACAGCCGACCGATGGACATTTCATCGACGACGGAAGAACATGTAACAGTCCTTGTGAAGGTCAATACCCAATCAGTTAATGCCCATCAAAATGACATTAATGTTATTGATCTCTCAAAAGTCAAGAAGAAACTTGAATATGAGATTGAAATCGTAAATTCACCGTCTGACAGTCAAGAGGCGGTTTATGCAATAAATGGGCTGAACGTTTTCTCGTTCTCTTCCGTTAGTGGGACGATGAAACAAGCTAAATCAGTGCATCCAATATTATCGAGTAAGGCTTCGGTTACCAGCTCAAATGATTATGCTCCAACAACCGACCTAAATGTTTATGCTCCAACGACTGACCAAAAGGCTTTTGCTCCATCAGCTGGTTTCTACTCCCTTTCTAACCACGTGAATGAACTGAAATAACAAAATGGTCCTATACAGAAGATTAGGGATGTCAAGGCACTGTAGGATTGGGCCAGCATTCTTGCAAAGCCAATTGCTGACATGGGTAAGGCTCCTGTCACAACATCCTATCTATAAAAAATAGGCCCAAATATCAAGAGCTGGAAACGCAGAGCCCGACAAGCGAATGTGGACCCTTGTTCAAGCAAGACCTTTGACGACCAAAAGAAAAGAATGGGAGAAGGTCTGGTAGGAGGAACACTAAAGCGGACCCGAACTGAGGAGAATGACATATCCAATATCAACAAACCAACGGTGGATGCTGTTGAGCAGTCCCACCGAGAGCCATGA

mRNA sequence

ATGGTGGTGTCCGTTGAAGAATTCGGAGTCGTCAACGGAGGCGATGTGATGCAGCGCCTTCAAGGCGGCTTGGAACATTCCAAACAGTTTATTAGTGGAAAGGATGGGACTAAATCTGTACGTCTTGATGATCCTTTGGGTAGTGTTTGGACTCCTATCAAATATGAGAAGCTACCAGAAATTTGTTCTTATTGCGGCCGAATAGGACACGTTACAAAGAACTTCACTTTTTCCTTTGTTGACGATGGTTCCTCATCTCAGTGCCAAGAATACGGGATGTGGATGTCTTTTACTAGACGATCTTCAAATGTGTTCCGATCTCCGAGTACAAGCCCAATGGGTAATAATAGGATAATGATGGAGGCTTCACCAAATCAAATTGTTTCTCCATCACGCAATCAAGCAGCAAACGCGGGACAAGATGCAGGTCTGGACAACCAACAAAAATCACCTCCGATGACTGGTTCCGACAGCCGACCGATGGACATTTCATCGACGACGGAAGAACATGTAACAGTCCTTGTGAAGGTCAATACCCAATCAGTTAATGCCCATCAAAATGACATTAATGTTATTGATCTCTCAAAAGTCAAGAAGAAACTTGAATATGAGATTGAAATCGTAAATTCACCGTCTGACAGTCAAGAGGCGGTTTATGCAATAAATGGGCTGAACGTTTTCTCGTTCTCTTCCGTTAGTGGGACGATGAAACAAGCTAAATCAGTGCATCCAATATTATCGAGTAAGGCTTCGGTTACCAGCTCAAATGATTATGCTCCAACAACCGACCTAAATGTTTATGCTCCAACGACTGACCAAAAGGCTTTTGCTCCATCAGCTGGCCCAAATATCAAGAGCTGGAAACGCAGAGCCCGACAAGCGAATGTGGACCCTTGTTCAAGCAAGACCTTTGACGACCAAAAGAAAAGAATGGGAGAAGGTCTGGTAGGAGGAACACTAAAGCGGACCCGAACTGAGGAGAATGACATATCCAATATCAACAAACCAACGGTGGATGCTGTTGAGCAGTCCCACCGAGAGCCATGA

Coding sequence (CDS)

ATGGTGGTGTCCGTTGAAGAATTCGGAGTCGTCAACGGAGGCGATGTGATGCAGCGCCTTCAAGGCGGCTTGGAACATTCCAAACAGTTTATTAGTGGAAAGGATGGGACTAAATCTGTACGTCTTGATGATCCTTTGGGTAGTGTTTGGACTCCTATCAAATATGAGAAGCTACCAGAAATTTGTTCTTATTGCGGCCGAATAGGACACGTTACAAAGAACTTCACTTTTTCCTTTGTTGACGATGGTTCCTCATCTCAGTGCCAAGAATACGGGATGTGGATGTCTTTTACTAGACGATCTTCAAATGTGTTCCGATCTCCGAGTACAAGCCCAATGGGTAATAATAGGATAATGATGGAGGCTTCACCAAATCAAATTGTTTCTCCATCACGCAATCAAGCAGCAAACGCGGGACAAGATGCAGGTCTGGACAACCAACAAAAATCACCTCCGATGACTGGTTCCGACAGCCGACCGATGGACATTTCATCGACGACGGAAGAACATGTAACAGTCCTTGTGAAGGTCAATACCCAATCAGTTAATGCCCATCAAAATGACATTAATGTTATTGATCTCTCAAAAGTCAAGAAGAAACTTGAATATGAGATTGAAATCGTAAATTCACCGTCTGACAGTCAAGAGGCGGTTTATGCAATAAATGGGCTGAACGTTTTCTCGTTCTCTTCCGTTAGTGGGACGATGAAACAAGCTAAATCAGTGCATCCAATATTATCGAGTAAGGCTTCGGTTACCAGCTCAAATGATTATGCTCCAACAACCGACCTAAATGTTTATGCTCCAACGACTGACCAAAAGGCTTTTGCTCCATCAGCTGGCCCAAATATCAAGAGCTGGAAACGCAGAGCCCGACAAGCGAATGTGGACCCTTGTTCAAGCAAGACCTTTGACGACCAAAAGAAAAGAATGGGAGAAGGTCTGGTAGGAGGAACACTAAAGCGGACCCGAACTGAGGAGAATGACATATCCAATATCAACAAACCAACGGTGGATGCTGTTGAGCAGTCCCACCGAGAGCCATGA

Protein sequence

MVVSVEEFGVVNGGDVMQRLQGGLEHSKQFISGKDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFTRRSSNVFRSPSTSPMGNNRIMMEASPNQIVSPSRNQAANAGQDAGLDNQQKSPPMTGSDSRPMDISSTTEEHVTVLVKVNTQSVNAHQNDINVIDLSKVKKKLEYEIEIVNSPSDSQEAVYAINGLNVFSFSSVSGTMKQAKSVHPILSSKASVTSSNDYAPTTDLNVYAPTTDQKAFAPSAGPNIKSWKRRARQANVDPCSSKTFDDQKKRMGEGLVGGTLKRTRTEENDISNINKPTVDAVEQSHREP

Homology

[Close]

BLAST of Lag0034984 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-04
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 40  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT- 99
           + LD P+G  W PI+YE+LP+   +CGR+ H+ K+ +   VD  S S+  +YG W+ F  
Sbjct: 190 LNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVD--SVSKNLQYGPWLRFQG 249

Query: 100 -RRSSNV 105
            + SSN+
Sbjct: 250 HKNSSNI 254

[Close]

BLAST of Lag0034984 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-04
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 40  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF 98
           + +D P+G  W PI+YE+LP+ C +CG IGH + +    ++     S+   EYG W+ F
Sbjct: 189 INIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRF 247

[Close]

BLAST of Lag0034984 vs. NCBI nr
Match: OMO73078.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-04
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 34  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGM 93
           K G    R D P   +W   KYE+LP++C  CGRIGHV K+  +   D       + YG 
Sbjct: 250 KTGFNLKRRDKPY--IWVSFKYERLPDLCFTCGRIGHVAKDCIYRLDDQPK----ENYGH 309

Query: 94  WMSFTRRSSNVFRS 108
           WM  T+     F S
Sbjct: 310 WMKATQAKQKQFSS 317

[Close]

BLAST of Lag0034984 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.3e-05
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 40  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGMWMSFT- 99
           + LD P+G  W PI+YE+LP+   +CGR+ H+ K+ +   VD  S S+  +YG W+ F  
Sbjct: 190 LNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVD--SVSKNLQYGPWLRFQG 249

Query: 100 -RRSSNV 105
            + SSN+
Sbjct: 250 HKNSSNI 254

[Close]

BLAST of Lag0034984 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 40  VRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQC-QEYGMWMSF 98
           + +D P+G  W PI+YE+LP+ C +CG IGH + +    ++     S+   EYG W+ F
Sbjct: 189 INIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRF 247

[Close]

BLAST of Lag0034984 vs. ExPASy TrEMBL
Match: A0A1R3HRY4 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_17479 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 34  KDGTKSVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKNFTFSFVDDGSSSQCQEYGM 93
           K G    R D P   +W   KYE+LP++C  CGRIGHV K+  +   D       + YG 
Sbjct: 250 KTGFNLKRRDKPY--IWVSFKYERLPDLCFTCGRIGHVAKDCIYRLDDQPK----ENYGH 309

Query: 94  WMSFTRRSSNVFRS 108
           WM  T+     F S
Sbjct: 310 WMKATQAKQKQFSS 317

The following BLAST results are available for this feature:

BLAST of Lag0034984 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132681.1	1.3e-04	40.30	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022156185.1	2.9e-04	37.29	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
OMO73078.1	8.4e-04	37.84	reverse transcriptase [Corchorus capsularis]	[more]

BLAST of Lag0034984 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0034984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSZ1	6.3e-05	40.30	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DU55	1.4e-04	37.29	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1R3HRY4	4.1e-04	37.84	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_17479 PE=4 SV...	[more]

BLAST of Lag0034984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 50..75 e-value: 2.6E-7 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034984.1	Lag0034984.1	mRNA