Lag0034942 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034942
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr3: 12694362 .. 12694727 (-)
RNA-Seq ExpressionLag0034942
SyntenyLag0034942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCTGATGAAAATCAAACTCTAACGACGAAACCCTCCTTAGAAACAAATGACGACGAAAATACTGTGGTTATTGTTTATAAAGAAGAGTACCCTGATTCAGAAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAATTAAGCTGGAAAGTTCCAGGGAGTTATTCCTTTAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAAGATCATCATTTTCATCATCGTCGTCATCCTCGCATCAGAAGAAACTTCGTCTCAAGGAGTTCTTTTGGAGAAGATCAAGGAGGATGACAAAATCCTCGATATAG

mRNA sequence

ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCTGATGAAAATCAAACTCTAACGACGAAACCCTCCTTAGAAACAAATGACGACGAAAATACTGTGGTTATTGTTTATAAAGAAGAGTACCCTGATTCAGAAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAATTAAGCTGGAAAGTTCCAGGGAGTTATTCCTTTAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAAGATCATCATTTTCATCATCGTCGTCATCCTCGCATCAGAAGAAACTTCGTCTCAAGGAGTTCTTTTGGAGAAGATCAAGGAGGATGACAAAATCCTCGATATAG

Coding sequence (CDS)

ATGTTGGTGAAATATGCTTCAATAGAAGACTCCAACTCTGATGAAAATCAAACTCTAACGACGAAACCCTCCTTAGAAACAAATGACGACGAAAATACTGTGGTTATTGTTTATAAAGAAGAGTACCCTGATTCAGAAAAATCTATAGAAAGTGAAGCTAAAATATATGACCAATTAAGCTGGAAAGTTCCAGGGAGTTATTCCTTTAGAGAATTTGATGAAGTCACTTGGTTGGAAGAGTTGACAGATAAATCATCATCAAGATCATCATTTTCATCATCGTCGTCATCCTCGCATCAGAAGAAACTTCGTCTCAAGGAGTTCTTTTGGAGAAGATCAAGGAGGATGACAAAATCCTCGATATAG

Protein sequence

MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVYKEEYPDSEKSIESEAKIYDQLSWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSSSSSHQKKLRLKEFFWRRSRRMTKSSI
Homology
BLAST of Lag0034942 vs. NCBI nr
Match: XP_023548989.1 (uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 55/96 (57.29%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 1   MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVY-KEEYPDSEKSIESEAKIYDQL 60
           +LVKY+  EDS  DE QT+TTK  LE ND+EN VV  Y +EEYPDSEKS+E+E       
Sbjct: 103 ILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENE------- 162

Query: 61  SWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSS 96
              V  S S  EFDE TWL   TDKSSS S  SSSS
Sbjct: 163 ---VAESVSSEEFDEATWLIGWTDKSSSYSLTSSSS 188

BLAST of Lag0034942 vs. NCBI nr
Match: KAG6575810.1 (hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 59/109 (54.13%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 1   MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVY-KEEYPDSEKSIESEAKIYDQL 60
           MLVKY+ +EDS  DE QTLTTK   E ND+EN VV  Y +EEY DSEKS+E+E       
Sbjct: 104 MLVKYSPLEDSVFDETQTLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENE------- 163

Query: 61  SWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSSSSSHQKKLRLKEF 109
              V  S+S  EFDE TWL   TDKSS     SSSSSSS ++ L  K F
Sbjct: 164 ---VGESFSSEEFDEATWLIGWTDKSS-----SSSSSSSLEEVLSQKAF 197

BLAST of Lag0034942 vs. NCBI nr
Match: KAG7014352.1 (hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 1   MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVY-KEEYPDSEKSIESEAKIYDQL 60
           MLVKY+S +DS  DE QTLTTK   E ND+EN VV  Y +EEY DSEKS+E+E       
Sbjct: 183 MLVKYSSSKDSVFDETQTLTTKSIPEKNDEENVVVNNYEEEEYTDSEKSVENE------- 242

Query: 61  SWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSSSSSHQKKLRLKEF 109
              V  S+S  EFDE TWL   TDKS   SS+S +SSSS ++ L  K F
Sbjct: 243 ---VAESFSSEEFDEATWLIGWTDKS---SSYSLTSSSSLEEILSQKAF 278

BLAST of Lag0034942 vs. NCBI nr
Match: XP_022991241.1 (uncharacterized protein LOC111487956 [Cucurbita maxima])

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-10
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 1   MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVY-KEEYPDSEKSIESEAKIYDQL 60
           MLVKY+ +EDS  DE QTLTTK   E ND+EN VV  Y +EEY DSEKS+E+        
Sbjct: 101 MLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVVNNYEEEEYTDSEKSVEN-------- 160

Query: 61  SWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSSSSSHQKKLRLKE 108
              V  S+S  EFDE TWL   TDKS   SS+S +SSSS ++ L  K+
Sbjct: 161 --GVAESFSSEEFDEATWLIGWTDKS---SSYSLTSSSSLEEALSQKD 195

BLAST of Lag0034942 vs. NCBI nr
Match: XP_038899634.1 (uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-10
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0

Query: 1   MLVKYASIEDSNSDENQTLTTKPSLETNDDENTVVIVYKE-EYPDSEKSIESEAKIYDQL 60
           M VKY SIEDS  +EN+ L T+  LE   +EN VV++Y+E EYP+SE+ IE+E + Y++ 
Sbjct: 110 MSVKYTSIEDS-KEENRPLMTEHILEKKKEENIVVVIYEEGEYPNSEEFIENEIQKYEES 169

Query: 61  SWKVPGSYSFREFDEVTWLEELTDKSSSRSSFSSSSSSSHQKKLRLKEF 109
           S KV  S+   EFD+ TWLEE T + S+ SS SSSSSSS +    +  F
Sbjct: 170 S-KVTKSFPSAEFDD-TWLEEWTYRPSTSSSSSSSSSSSEETSFSIGVF 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023548989.14.2e-1157.29uncharacterized protein LOC111807479 [Cucurbita pepo subsp. pepo][more]
KAG6575810.14.2e-1154.13hypothetical protein SDJN03_26449, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014352.11.2e-1053.21hypothetical protein SDJN02_24529, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022991241.17.9e-1051.85uncharacterized protein LOC111487956 [Cucurbita maxima][more]
XP_038899634.17.9e-1049.54uncharacterized G-patch domain protein DDB_G0278987-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034942.1Lag0034942.1mRNA