Lag0034596 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034596
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein ELF4-LIKE
Location	chr3: 8752645 .. 8752989 (-)
RNA-Seq Expression	Lag0034596
Synteny	Lag0034596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTGACACATTTTCAGGGCTTGGCAGTAGTGCACAGATTGATAGCAAGATTTTACAGACATTTCAAAAGAATTTTGTTCAAGTCCAAAACATATTGGATCAAAACAAGCTGCTCATCAGTGAGATAAACCAAAACCACGAGTCAAAGATCCCTGACAATCTTAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCTTTGAAGTCAGATGGAAAAGCAGGCCAGAAGAGAAACAGGGCTGTCTGA

mRNA sequence

ATGGAGGGTGACACATTTTCAGGGCTTGGCAGTAGTGCACAGATTGATAGCAAGATTTTACAGACATTTCAAAAGAATTTTGTTCAAGTCCAAAACATATTGGATCAAAACAAGCTGCTCATCAGTGAGATAAACCAAAACCACGAGTCAAAGATCCCTGACAATCTTAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCTTTGAAGTCAGATGGAAAAGCAGGCCAGAAGAGAAACAGGGCTGTCTGA

Coding sequence (CDS)

ATGGAGGGTGACACATTTTCAGGGCTTGGCAGTAGTGCACAGATTGATAGCAAGATTTTACAGACATTTCAAAAGAATTTTGTTCAAGTCCAAAACATATTGGATCAAAACAAGCTGCTCATCAGTGAGATAAACCAAAACCACGAGTCAAAGATCCCTGACAATCTTAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCTTTGAAGTCAGATGGAAAAGCAGGCCAGAAGAGAAACAGGGCTGTCTGA

Protein sequence

MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAV

Homology

[Close]

BLAST of Lag0034596 vs. NCBI nr
Match: XP_022961237.1 (protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961238.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961239.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022987288.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022987289.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022987290.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_023516901.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023516902.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023516903.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >KAG6590027.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023688.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGLGSSAQID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]

BLAST of Lag0034596 vs. NCBI nr
Match: XP_022933909.1 (protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933910.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933911.1 protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022968596.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022968604.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_022968613.1 protein ELF4-LIKE 4-like [Cucurbita maxima] >XP_023529215.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023529216.1 protein ELF4-LIKE 4-like [Cucurbita pepo subsp. pepo] >KAG6588067.1 Protein ELF4-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+AQIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAV 115
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAV
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAV 114

[Close]

BLAST of Lag0034596 vs. NCBI nr
Match: XP_004144022.1 (protein ELF4-LIKE 4 [Cucumis sativus] >XP_008450908.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_008450909.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_008450910.1 PREDICTED: protein ELF4-LIKE 4 [Cucumis melo] >XP_011660014.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_031736193.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_031736194.1 protein ELF4-LIKE 4 [Cucumis sativus] >XP_038878351.1 protein ELF4-LIKE 4 [Benincasa hispida] >XP_038878352.1 protein ELF4-LIKE 4 [Benincasa hispida] >KAA0055791.1 protein ELF4-LIKE 4-like isoform X2 [Cucumis melo var. makuwa] >KGN66281.1 hypothetical protein Csa_007334 [Cucumis sativus] >TYK10042.1 protein ELF4-LIKE 4-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGLGSS QIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]

BLAST of Lag0034596 vs. NCBI nr
Match: KAG7021961.1 (Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSG+GS+AQIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGIGSTAQIDSKILQTFHKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA
Sbjct: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 113

[Close]

BLAST of Lag0034596 vs. NCBI nr
Match: XP_022147541.1 (protein ELF4-LIKE 4 [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 9.0e-48
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGDTFSGLGS AQID KILQ FQKNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNV
Sbjct: 1   MEGDTFSGLGSGAQIDGKILQRFQKNFVQVQSILDQNKLLISEINQNHESKIPDNLNRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRAV 115
           GLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSGALKSDGKAGQKRNR V
Sbjct: 61  GLIRELNNNIRRVVDLYADLSYNFTRSVEVSSEGDSSGALKSDGKAGQKRNRVV 114

[Close]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-37
Identity = 81/113 (71.68%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKRNRA 114
           GLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG LKSDGKA QKR R+
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRS 113

[Close]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-35
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MEGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNV 60
           MEGD +SG G   Q+D K+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKA-GQKRNRA 114
           GLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G LKSDGKA  QKR R+
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRS 118

[Close]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MEGDTFSG-LGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRN 60
          MEGDT S  +GS  Q+D KILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RN
Sbjct: 1  MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61 VGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS 98
          VGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSS 98

[Close]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 16  DSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVD 75
           D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 76  LYADLSCSFTRSMEVSSEGDSSG 99
           +Y+DL+ SF+        G   G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGG 104

[Close]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-13
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 2   EGDTFSGLGSSAQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVG 61
           E D      S+A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVG
Sbjct: 20  ENDGEDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVG 79

Query: 62  LIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS 98
           LI E+N NI +V+++Y+DLS +F +  +     + +GD++
Sbjct: 80  LINEINGNISQVMEIYSDLSLNFAKKFDQRRRTTKDGDTT 119

The following BLAST results are available for this feature:

BLAST of Lag0034596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961237.1	1.8e-51	99.12	protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022961238.1 protein ELF4-LIKE ...	[more]
XP_022933909.1	2.3e-51	97.37	protein ELF4-LIKE 4-like [Cucurbita moschata] >XP_022933910.1 protein ELF4-LIKE ...	[more]
XP_004144022.1	3.0e-51	99.12	protein ELF4-LIKE 4 [Cucumis sativus] >XP_008450908.1 PREDICTED: protein ELF4-LI...	[more]
KAG7021961.1	1.1e-50	97.35	Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022147541.1	9.0e-48	92.98	protein ELF4-LIKE 4 [Momordica charantia]	[more]

BLAST of Lag0034596 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q570U6	5.7e-37	71.68	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	9.1e-35	70.18	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
Q8S8F5	1.3e-33	76.53	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
O04211	2.0e-13	42.17	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	3.4e-13	40.00	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 14..95 e-value: 2.8E-39 score: 132.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..114
None	No IPR available	PANTHER	PTHR33469:SF16	PROTEIN ELF4-LIKE 3	coord: 1..113
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034596.1	Lag0034596.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005634	nucleus