Lag0034545 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034545
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Calcium-transporting ATPase
Location	chr3: 8271029 .. 8275190 (-)
RNA-Seq Expression	Lag0034545
Synteny	Lag0034545

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACCTTTTCGATAGAGGCCAGCGCTATGATTATTGCTCTGAAAGTAAGATGCCTTCACACAATAAATTTATCGCAAAATTCTTCAACGTTGTCTATTTAGTTCAATATCTATTGGATACTGTACAAAAAAGGTCTCTGTTCAAATTTCCAACTGATGCAATGATCCTTTCCATCGAATGTAGTGCTTTTTTCGTCTCAAACATCTTTAATTTTATTTGCAACAAATAATTACACAATATCTCAAATCTCACTGCCAATTCTCCTACAACAACTTACCAACACTAAAGAAAGGAGGGTGAATGCCTCTATTAGTTAAACTGGGATGGACAATCTAATCCAAATTTATGATTGTAGGTTTCTAGCCTCATTTTCTTTGTCTGTCACATGAATTAAAAAATTTGTAACAAGAAAAGCCTCCTGTCATGACTTCTCTTCTAATTGAGTTACAACTGGTGCTTTTATCCGGAGGAGCTTTGAGATTTGAAATGTTGTAATTTGCTTGATGTGTTCCTTATTGTTTGTTTTTTACTTAAATGAGAGTTTGTTTTAATTAGCTCATTTCCTGGCATGCTTTCAGTTAAAGTGCAGTTAATGTTCTAATAATTAAAGAAGCTAATCTCTTTATGGTTAGGCAATATTCTCTTATCTTTGTTAATTAACTCATTTTCTGACATGCTTTCAATAAATGCTTTCAGTTAAAAGTGCAGTCAAACTTAAATGGGAGCTGAAGAAGCCAGTGTTTATTCATTGTGCTTATGGTATAAGTAATAATTTGTTAAAGTACTCTGGTTTTTTAGTGCATTGTTGTTTATAGGGGTGGAACGAAGAAGGAAGAATAATTAAATTGCCTACTCTTAGTTTGTTTAGATGCAAAAAGTTGTTTAAATGAGTTTAAGAGTTTGAATTTTTCCCTCGGTAAAAAATTGATGGTTTTTTATCTGGTTGGTTTTTGGATCGGATTGGATGACTATGCTTCTGTGATGATATTGTTTGATGCTTGTGTTTGGAAGACAATTTCATTTTTTGTTCAACCTGAATTGTTCCCTTAGATTACTTCTCACTTGATTCTTAATTTGTATACTCTTCCATGGATTTATCCAGAGTGTGTGCTAGAATGATGCTAACGCATGAGGCTGACTATTTTATGCCCTAAAATCTTGTAATTCGACCTCCTATTCCACCGCCCGATAGTTGTTTAAAATGCCCACCAAAGAAACTGTGCTGCTTGATTTCTTGATTGTTTTTAACATCCAGTTGTTCTTACTTGGTTCATGGGTTAGGTAGTATAAAAGTGTCAAACTGGGTTTAGGTTTGGTGTATAGGTTTATTTATATCAGACTATAAGTTTGCTAACTCATGGATTATATAAACTAAACCTTTAGAAACCTCCTCTCAAGGTACATATGTACTTTTACATATTACAAATCCATAAACTAAACATTTAGGTAAACCCAATTTGTTGTAACTCATTACTCTACAAAATTTAAGCATGAGTTACACAAATTCAAGTTTCCCAACCCTAAACTTACAAATCTAGACTTATTAAAACTAGGAACCCAAATATCTTCCAAGTGCACAAAGATTGAAAAGTGTAGAAAGTAATATTTATACTGAAATGAATTCAAATTTAGAACAGTACAACCTAGAGGTTTTTTTCCTTCTTTTTTTAAAGGAATATTACATTATAAATACGAGGGTGGAGATTCAAACTTGGTAGAGATGTCTTTGCCTTTGAGCTCAAATTGGCAAATACCGTAAAATGACCCCTTTAACTTCGAGCTTACTGAAGTTGTGTTCCTGTTATGTTTGCACTCTCTTTATGTATGTCCTCCTCTTTGCAAGTTTCCATAGTTTTCATAGTCCAAAATCTGATAGGTTACTGGAGATGCAAGTTTGTACTTCTTGCCTTAAGTCCACCAGTAAGTTGATTTTGTTTTACTTGATAATTAACATTTTTTTTTAATCATGAATTCAGGTTTGGGCTCTGGAATGACAAAGGTTAATCCTTTGGCAGAAATCAAATCTTTTATGTGCATACCATATGCAAGTTCTCTTCAAATCTTATATTAATGTTATGTATAAGTTCCATTCGTTTAAAAATCATATGATGATTTATATGTTCTTTTGTCATCAAATCTTATATTACCGATATGTATAAAAATTGCTAGCATTTATTTACTTGTGAAGTTTCCACACACACCCATTTGCTGGAAACTTGTGCATAAACAAAACTACTAGTAGGGAAATTTTTTCAAATCTTGCAGTGATCAATTACTTGACTAGGAATCGCTAGCATTTATTTGGTTGTTTGGTGGCACGATGTCCTTGATAAGCACAACCTTTCAACTACTCCTTGTTGACATACTTTGTTGAACCTTAGGTTGCTTCCCTCTAATTTCTGCATATTTCATTGTCAGATAGATGTCATTACGGAGTGTGAAAAATTACACTAGATGGGACCTAGACGTTATGATTATGCTGGTACAAGAGTGTTCTTGAGGCATAGGTATCTTCAGTCAGCTTTACTTAATAAACATCCAAAGTTCTTTTGAAACAGAGACGTCATTGTAAGTTCACAATTATTCCAATAATTTCACATACATGAAACTAATCTTTGTACTCAATTTCATGCTAACAAATTAAACACATCAATTTATGTAGCAGATAGATATAAATCCATTAGAACTTCAAATTTTGGCCTGCTAATCTATTGATGGAGGTTTTTAAATTGTAATAACTGATGCATTGTCTCTATTGGGATTTGTTTTGATTCTCGAGCTTTCTGCTAACAATTTTTTTACTTCAATCTCTGCTCTAATGAAAAAAAAGAAGATGAAGTTGAGTCCAAAAGAAGTTGAATGGTACTAAATTATGTTTTGGGTTGGTTTGTTTTGTTCTTGTATTTTGATGTTTTGAAGTTTCTACTTATTGTTCCTATTTTGGATCATCTTTATTTCTAATTTAATTTATTAGATTGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCTATAGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAACATTTTAGTGAATATGTTTGTTGCGAAGTACTTGTACTAAGATGAGCTTTGTCATGAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTCATTTTTTTCATTTCTTCTTCAAGATTGAACCATTATATTGAAGTTTCTTCGTTATCTGGTGTCGGTGCATGTATGATATATTCTACTTCTGTTATTAGTATATTAGGTACTCTTGCATTACGGAGTATAAAAGGAATATCCTTTTGTGCTTCAACATATAAAATCAGAATCAAATAATCAATAAAATTTGGCCTCTTCTTTCTCCATATATCTTAGGAACTATTTGTCTTGTCATTATTCTTGTCATTTGAAATCCGATGTTTTTGTTAAAACCACATCAGGGTTACTTGTTCATTAGAAATATGAGGTTTTGAGTGTCAGTATTTGGATTTTTTGGCAGGTTGTGTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAAGTATGTTAATGTTTTTACATTGAGTTGTTACGTTCTTGTATTTAGTTCTTTTAATGAGTTGTTATGCTCTTGTGTTTAGTTTCATTGAATTCTTATAAGTTTAGTTTCACTTACTTTCCATTGAATTGTTGTGTTTATGAGGTTCAGTACATTGTTGCACTTAGTTTTTTCATTCAAAAAGTTTCGATGATTTGAGATAAGTGCAAAAGTTTGAGTTGTTATAAGTTTAGTTTCACTTGTTTTCCATTGAGTTTTTATGTTTATGAGGTTTGCTACATTGTTGCACTCAAGTTCATTATTTTTTATTAGTTGTTTCATTTAAAAGTATGGATGATTTGAGATAATTTCATAAGTTTTTGTTGTTATGTTTGTTATGTGAGTTCTTGTTTCGGTTGTATCGAACGTAATTACAATTTGTTTTTCTTAGGTTCTTCAAGTTCGATGTACGAGCAAGATTACGCTGACAAGAAAGGAAGCTGCATGTACGAGAATTTTTGTTTTTCTTAA

mRNA sequence

ATGGAGGACCTTTTCGATAGAGGCCAGCGCTATGATTATTGCTCTGAAATTAAAAGTGCAGTCAAACTTAAATGGGAGCTGAAGAAGCCAGTGTTTATTCATTGTGCTTATGGTTTGGGCTCTGGAATGACAAAGATGGGACCTAGACGTTATGATTATGCTGGTACAAGAGTGTTCTTGAGGCATAGATTGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCTATAGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAACATTTTAGTGAATATGTTTGTTGCGAAGTTGTGTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAAGTTCTTCAAGTTCGATGTACGAGCAAGATTACGCTGACAAGAAAGGAAGCTGCATGTACGAGAATTTTTGTTTTTCTTAA

Coding sequence (CDS)

ATGGAGGACCTTTTCGATAGAGGCCAGCGCTATGATTATTGCTCTGAAATTAAAAGTGCAGTCAAACTTAAATGGGAGCTGAAGAAGCCAGTGTTTATTCATTGTGCTTATGGTTTGGGCTCTGGAATGACAAAGATGGGACCTAGACGTTATGATTATGCTGGTACAAGAGTGTTCTTGAGGCATAGATTGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCTATAGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAACATTTTAGTGAATATGTTTGTTGCGAAGTTGTGTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAAGTTCTTCAAGTTCGATGTACGAGCAAGATTACGCTGACAAGAAAGGAAGCTGCATGTACGAGAATTTTTGTTTTTCTTAA

Protein sequence

MEDLFDRGQRYDYCSEIKSAVKLKWELKKPVFIHCAYGLGSGMTKMGPRRYDYAGTRVFLRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEEHFSEYVCCEVVFTLIVFRPFVGEIIIGKVKESDANGLRSSSSSMYEQDYADKKGSCMYENFCFS

Homology

[Close]

BLAST of Lag0034545 vs. NCBI nr
Match: KAG6598903.1 (Calcium-transporting ATPase 8, plasma membrane-type, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 60  LRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           +++  RAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPE+
Sbjct: 455 MKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPED 500

[Close]

BLAST of Lag0034545 vs. NCBI nr
Match: XP_022996601.1 (calcium-transporting ATPase 10, plasma membrane-type-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 60  LRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           +++  RAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPE+
Sbjct: 630 MKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPED 675

[Close]

BLAST of Lag0034545 vs. NCBI nr
Match: XP_022929647.1 (calcium-transporting ATPase 10, plasma membrane-type-like [Cucurbita moschata] >XP_022929648.1 calcium-transporting ATPase 10, plasma membrane-type-like [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 60  LRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           +++  RAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPE+
Sbjct: 631 MKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPED 676

[Close]

BLAST of Lag0034545 vs. NCBI nr
Match: KAG7029861.1 (Calcium-transporting ATPase 10, plasma membrane-type [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 60  LRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           +++  RAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPE+
Sbjct: 631 MKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPED 676

[Close]

BLAST of Lag0034545 vs. NCBI nr
Match: XP_038875898.1 (calcium-transporting ATPase 8, plasma membrane-type-like [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 60  LRHRLRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           +++  RAIEDMASRSLRCVAIAYRS EPENVPDGEEQLSKWALPEE
Sbjct: 278 MKYFKRAIEDMASRSLRCVAIAYRSVEPENVPDGEEQLSKWALPEE 323

[Close]

BLAST of Lag0034545 vs. ExPASy Swiss-Prot
Match: Q9SZR1 (Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA10 PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 66  AIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           AI+DMA+RSLRCVAIA+R+FE + +P  EEQLS+W LPE+
Sbjct: 635 AIDDMAARSLRCVAIAFRTFEADKIPTDEEQLSRWELPED 674

[Close]

BLAST of Lag0034545 vs. ExPASy Swiss-Prot
Match: Q9LF79 (Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA8 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 67  IEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           I DMA R+LRCVA+A+R++E E VP GEE LSKW LPE+
Sbjct: 633 INDMAGRTLRCVALAFRTYEAEKVPTGEE-LSKWVLPED 670

[Close]

BLAST of Lag0034545 vs. ExPASy Swiss-Prot
Match: Q9LU41 (Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA9 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 66  AIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEEHFSEYVCCEVVFTLIVFRPF 125
           AI+ MA  SLRCVAIA R+ E   VP  +E L KWALPE+   E +   +V      RP 
Sbjct: 648 AIDSMAKNSLRCVAIACRTQELNQVPKEQEDLDKWALPED---ELILLAIVGIKDPCRPG 707

Query: 126 VGEII 131
           V E +
Sbjct: 708 VREAV 709

[Close]

BLAST of Lag0034545 vs. ExPASy Swiss-Prot
Match: Q7X8B5 (Calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica OX=39947 GN=ACA5 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 67  IEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEE 106
           IEDMA+ SLRCVA AYR++E  +VP  E++ + W LPE+
Sbjct: 643 IEDMAASSLRCVAFAYRTYEMVDVP-SEDRRADWILPED 680

The following BLAST results are available for this feature:

BLAST of Lag0034545 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598903.1	3.7e-13	86.96	Calcium-transporting ATPase 8, plasma membrane-type, partial [Cucurbita argyrosp...	[more]
XP_022996601.1	3.7e-13	86.96	calcium-transporting ATPase 10, plasma membrane-type-like [Cucurbita maxima]	[more]
XP_022929647.1	3.7e-13	86.96	calcium-transporting ATPase 10, plasma membrane-type-like [Cucurbita moschata] >...	[more]
KAG7029861.1	3.7e-13	86.96	Calcium-transporting ATPase 10, plasma membrane-type [Cucurbita argyrosperma sub...	[more]
XP_038875898.1	1.1e-12	86.96	calcium-transporting ATPase 8, plasma membrane-type-like [Benincasa hispida]	[more]

BLAST of Lag0034545 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZR1	2.6e-09	67.50	Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana OX=...	[more]
Q9LF79	2.4e-07	66.67	Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana OX=3...	[more]
Q9LU41	2.2e-05	46.15	Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana OX=3...	[more]
Q7X8B5	1.9e-04	56.41	Calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japon...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034545.1	Lag0034545.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
cellular_component	GO:0005887	integral component of plasma membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0005388	P-type calcium transporter activity