Lag0034518 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0034518
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description60S ribosomal protein L31
Locationchr3: 8065977 .. 8067095 (-)
RNA-Seq ExpressionLag0034518
SyntenyLag0034518
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGAAAACGAAGGGGAGGAAGGAGGAGGTGGTCACCAGAGAGTACACCATCAACCTACACAAGCGTCTGCATGGCTGGTACCAATTCGTTCTTGCTTTTTCTTCCCTGCGTATTTTTAACTTATTCGTCGCTATTATTGACTGATGTCATGCTGCCGCTCAATTAGATCTGTAAGCTGTTTGTTGATGTTCGGCCAATATCTATGCCGAGAGTTTTTCGGTTGCGTATGCTTTGATAATGTCTTATGAAACATTTTTTTCTTGATTTTAATTAGGAATTTAGCAACTGGTGTAGCAGGTCAACGTGGTTATTTGTGTGTGTATGTCACCAATATGTTAATTGTGAAATTTCTATAAGATAGGAACTTGGGGACAAAAGATAAATTTCATCGTGGATTTCCTTTCAGAACACGTATCTGTGATCTCAGGATAATAGAATGCACTGATAGTTAATTGGCCGTGGAGGGTATTGAAGATGGAGACGAGATCTAGAAGAATAATGATAGCAAAATTTTGTAAAATTTTTATATAAATATATACAACAAAAGGTAAATAGAAAAACATTTCAATATAGGTACTATTAAGTTTCACTTGGATTTCAATATAGGTACTATATGTATTGTTAAATATTGAACAAGCGGGCTGGTGGATGGTTTATGTGCTGTTTCCTTCTGTCACCACACACCTTTTCATTAGTAATTTCTAGTTCAGTGTTTGTAGTTCTTTCCCTTCATTGTATCAGTAGCACATCCAATTTCAATCATGAATTGGTCTTGGATTCGTAACTGTAACGACTCTCTAGTTCTCATGCTTTACTGGAATTCTAAATGACAGTACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAACGCAATGGGAACAAAGGATGTCAGGGTGGACGTGAAACTGAACAAACATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTTCGCATTGCACGCAAGAGGAATGACGACGAAGATGCAAAGGAAGAACTATATTCTCTTGTTACTGTTGCCGAAATCCCAGCAGAAGGTTTGAAAGGATTAGGGACCAAGGTCATCGATGAAGAAGATTGA

mRNA sequence

ATGGTTGAGAAAACGAAGGGGAGGAAGGAGGAGGTGGTCACCAGAGAGTACACCATCAACCTACACAAGCGTCTGCATGGCTGTACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAACGCAATGGGAACAAAGGATGTCAGGGTGGACGTGAAACTGAACAAACATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTTCGCATTGCACGCAAGAGGAATGACGACGAAGATGCAAAGGAAGAACTATATTCTCTTGTTACTGTTGCCGAAATCCCAGCAGAAGGTTTGAAAGGATTAGGGACCAAGGTCATCGATGAAGAAGATTGA

Coding sequence (CDS)

ATGGTTGAGAAAACGAAGGGGAGGAAGGAGGAGGTGGTCACCAGAGAGTACACCATCAACCTACACAAGCGTCTGCATGGCTGTACCTTCAAGAAGAAGGCTCCTAAGGCCATCAAGGAGATAAGGAAGTTTGCAGAGAACGCAATGGGAACAAAGGATGTCAGGGTGGACGTGAAACTGAACAAACATATCTGGAGCAGAGGAATTCGAAGTGTTCCAAGGAGAATTAGAGTTCGCATTGCACGCAAGAGGAATGACGACGAAGATGCAAAGGAAGAACTATATTCTCTTGTTACTGTTGCCGAAATCCCAGCAGAAGGTTTGAAAGGATTAGGGACCAAGGTCATCGATGAAGAAGATTGA

Protein sequence

MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Homology
[Close]
BLAST of Lag0034518 vs. NCBI nr
Match: XP_023531866.1 (60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo] >XP_023531867.1 60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo] >XP_023531868.1 60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]
BLAST of Lag0034518 vs. NCBI nr
Match: XP_038878471.1 (60S ribosomal protein L31 [Benincasa hispida] >XP_038878472.1 60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAE AMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]
BLAST of Lag0034518 vs. NCBI nr
Match: XP_004141039.1 (60S ribosomal protein L31 [Cucumis sativus] >KGN60552.1 hypothetical protein Csa_019297 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVI+EED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIEEED 120

[Close]
BLAST of Lag0034518 vs. NCBI nr
Match: XP_008450816.1 (PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928011.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928015.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022960857.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_023516766.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >XP_023516767.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >KAG6588019.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021916.1 60S ribosomal protein L31 [Cucurbita argyrosperma subsp. argyrosperma] >TYK10122.1 60S ribosomal protein L31 [Cucumis melo var. makuwa] >KAG7023639.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAE AMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120

[Close]
BLAST of Lag0034518 vs. NCBI nr
Match: KAG6589975.1 (60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAE AMGTKDVRVDVKL
Sbjct: 94  MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 153

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED
Sbjct: 154 NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 213

[Close]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-55
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           M +KTKGRKEEVVTREYTINLHKRLH CTFKKKAP AIKEIRKFA+ AMGTKDVRVDVKL
Sbjct: 1   MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVAEIPA+GLKGLGTK+I++ED
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120

[Close]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0 

Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAP AIKEIRKFA+ AMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 120
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVA+IPA  LKGLG ++I+E+D
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

[Close]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-53
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 5   TKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKLNKHI 64
           +K RKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFA+ AMGT DVRVDVKLNKHI
Sbjct: 6   SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHI 65

Query: 65  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 121
           WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct: 66  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

[Close]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 3.9e-52
Identity = 102/119 (85.71%), Postives = 110/119 (92.44%), Query Frame = 0 

Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKLN 61
           + + KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIRKFAE AMGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTKVI+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.6e-52
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKLN 61
           + + KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIRKFAE  MGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDEED 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGTK+I+EED
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

The following BLAST results are available for this feature:
BLAST of Lag0034518 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023531866.14.5e-5899.1760S ribosomal protein L31-like [Cucurbita pepo subsp. pepo] >XP_023531867.1 60S ... [more]
XP_038878471.17.8e-5899.1760S ribosomal protein L31 [Benincasa hispida] >XP_038878472.1 60S ribosomal prot... [more]
XP_004141039.11.3e-5798.3360S ribosomal protein L31 [Cucumis sativus] >KGN60552.1 hypothetical protein Csa... [more]
XP_008450816.12.3e-5798.33PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosoma... [more]
KAG6589975.12.3e-5798.3360S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lag0034518 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462901.7e-5590.0060S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1[more]
Q9MAV71.9e-5489.1760S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1[more]
Q9M5731.6e-5391.3860S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1[more]
P514203.9e-5285.7160S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2[more]
Q9STR18.6e-5284.8760S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000054Ribosomal protein L31eSMARTSM01380Ribosomal_L31e_2coord: 10..93
e-value: 1.2E-48
score: 177.7
IPR000054Ribosomal protein L31ePFAMPF01198Ribosomal_L31ecoord: 11..92
e-value: 2.6E-42
score: 142.9
IPR000054Ribosomal protein L31ePANTHERPTHR1095660S RIBOSOMAL PROTEIN L31coord: 1..120
IPR000054Ribosomal protein L31eCDDcd00463Ribosomal_L31ecoord: 9..92
e-value: 2.10091E-32
score: 107.27
IPR023621Ribosomal protein L31e domain superfamilyGENE3D3.10.440.10coord: 9..120
e-value: 1.4E-49
score: 168.7
IPR023621Ribosomal protein L31e domain superfamilySUPERFAMILY54575Ribosomal protein L31ecoord: 11..92
NoneNo IPR availablePANTHERPTHR10956:SF3360S RIBOSOMAL PROTEIN L31-2-RELATEDcoord: 1..120
IPR020052Ribosomal protein L31e, conserved sitePROSITEPS01144RIBOSOMAL_L31Ecoord: 54..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0034518.1Lag0034518.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome