Lag0034383 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034383
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr3: 6849652 .. 6850612 (-)
RNA-Seq Expression	Lag0034383
Synteny	Lag0034383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTTGTGCAGACCCGTCTCTTGGAAACTGGCGCTGTGCGGAGAGGATGTTCGATTACGTACAAGACCAATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATAACAAAAGGGGTATTTTTTATTTTGCTATTTCAATGTTGAGGGAAGATGAGTTGTGACTAGAGAATTTTACCTAGTCGTTTGTTTTGAAAGCCATTGGTTGCTTAAGGTGAAAAGATTCATGTGTTTGTGGTGAAGGCGGGGATGGATTATGATGATTATGTTTGTAATTCACTTATGGATATGTATGCTGAATTGAGCCAGATTGGGAGTGCTAAGAAGTTGTTCGACGAAATGCCGACTACAGATTATGTTTCTTGGAATGTTATGATTGCTGGGTATGTTAGGTGTCGGAGATTTGAGGATGCTTTGAATACATTTAAGGAAATGCAGCAAGAGAGCAATGAGAAACCCAGTGAAGCTGCTGTAGTTAGCACTCATTCTGCCTTTCTTCACGACCATGTAAGAAAGGAGCTTGGTTTTACCACTATAATCAACAATGCATTGTTAGATATGTGCACAAAATGTAGGTGTTTAAATATTGCCTGCTAGGTATTTGATGAAATGCCGATGAAAAATGTGATTTGTTGGACTAGCATGATTTCTTGCTTGTTCTGTGGACAACTGTTATTAATGGGTATGTTCATGGTGGTTGCTCTCCTTACAGGTTGTGCTCAGTTGGTAGCTCTAGAGCAAGGGAAATGGACTCATGGATGACAATGGATGCTGTGGTTGGTACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCATTATAAATTTTCTGTGAGTTAAAAGAGGACACAACATCTTGGACATCGATTATTTGCAGTCTCGGGGAATGGGAAGACTGGTGAAACACCAAGGCTGTTCACAGAAATGGAACTTGTACGAGCTTGA

mRNA sequence

ATGGCATTTTGTGCAGACCCGTCTCTTGGAAACTGGCGCTGTGCGGAGAGGATGTTCGATTACGTACAAGACCAATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATAACAAAAGGGGTGAAAAGATTCATGTGTTTGTGGTGAAGGCGGGGATGGATTATGATGATTATGTTTGTAATTCACTTATGGATATGTATGCTGAATTGAGCCAGATTGGGAGTGCTAAGAAGTTGTTCGACGAAATGCCGACTACAGATTATGTTTCTTGGAATGTTATGATTGCTGGGTATGTTAGGTGTCGGAGATTTGAGGATGCTTTGAATACATTTAAGGAAATGCAGCAAGAGAGCAATGAGAAACCCAGTGAAGCTGCTGTAGTTAGCACTCATTCTGCCTTTCTTCACGACCATCATGATTTCTTGCTTGTTCTGTGGACAACTGTTATTAATGGGTATGTTCATGGTGGTTGCTCTCCTTACAGGTTGTGCTCAGTTGGTAGCTCTAGAGCAAGGGAAATGGACTCATGGATGACAATGGATGCTGTGGTTGTCTCGGGGAATGGGAAGACTGGTGAAACACCAAGGCTGTTCACAGAAATGGAACTTGTACGAGCTTGA

Coding sequence (CDS)

ATGGCATTTTGTGCAGACCCGTCTCTTGGAAACTGGCGCTGTGCGGAGAGGATGTTCGATTACGTACAAGACCAATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATAACAAAAGGGGTGAAAAGATTCATGTGTTTGTGGTGAAGGCGGGGATGGATTATGATGATTATGTTTGTAATTCACTTATGGATATGTATGCTGAATTGAGCCAGATTGGGAGTGCTAAGAAGTTGTTCGACGAAATGCCGACTACAGATTATGTTTCTTGGAATGTTATGATTGCTGGGTATGTTAGGTGTCGGAGATTTGAGGATGCTTTGAATACATTTAAGGAAATGCAGCAAGAGAGCAATGAGAAACCCAGTGAAGCTGCTGTAGTTAGCACTCATTCTGCCTTTCTTCACGACCATCATGATTTCTTGCTTGTTCTGTGGACAACTGTTATTAATGGGTATGTTCATGGTGGTTGCTCTCCTTACAGGTTGTGCTCAGTTGGTAGCTCTAGAGCAAGGGAAATGGACTCATGGATGACAATGGATGCTGTGGTTGTCTCGGGGAATGGGAAGACTGGTGAAACACCAAGGCTGTTCACAGAAATGGAACTTGTACGAGCTTGA

Protein sequence

MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKRGEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSAFLHDHHDFLLVLWTTVINGYVHGGCSPYRLCSVGSSRAREMDSWMTMDAVVVSGNGKTGETPRLFTEMELVRA

Homology

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BLAST of Lag0034383 vs. NCBI nr
Match: KAG6592918.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-47
Identity = 105/173 (60.69%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  ERMFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 74  MAFCADPSVGNLRYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWP 133

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 134 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 193

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 194 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 246

[Close]

BLAST of Lag0034383 vs. NCBI nr
Match: KAG7025324.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-47
Identity = 105/173 (60.69%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  ERMFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 81  MAFCADPSVGNLRYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWP 140

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 141 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 200

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 201 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 253

[Close]

BLAST of Lag0034383 vs. NCBI nr
Match: XP_022960435.1 (pentatricopeptide repeat-containing protein At1g31430 [Cucurbita moschata] >XP_022960436.1 pentatricopeptide repeat-containing protein At1g31430 [Cucurbita moschata] >XP_022960437.1 pentatricopeptide repeat-containing protein At1g31430 [Cucurbita moschata] >XP_022960438.1 pentatricopeptide repeat-containing protein At1g31430 [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-47
Identity = 105/173 (60.69%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  ERMFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 81  MAFCADPSVGNLRYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWP 140

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 141 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 200

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 201 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 253

[Close]

BLAST of Lag0034383 vs. NCBI nr
Match: XP_023513900.1 (pentatricopeptide repeat-containing protein At1g31430 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513902.1 pentatricopeptide repeat-containing protein At1g31430 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46
Identity = 104/173 (60.12%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  E+MFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 81  MAFCADPSVGNLRYTEKMFDYIQGPSLFVYNVMVKAYAKRGSFRKVLLLFQRLREDELWP 140

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 141 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 200

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 201 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 253

[Close]

BLAST of Lag0034383 vs. NCBI nr
Match: XP_023513901.1 (pentatricopeptide repeat-containing protein At1g31430 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-46
Identity = 104/173 (60.12%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  E+MFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 1   MAFCADPSVGNLRYTEKMFDYIQGPSLFVYNVMVKAYAKRGSFRKVLLLFQRLREDELWP 60

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 61  DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 120

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 121 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 173

[Close]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot
Match: Q9C866 (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-23
Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = 0


Query: 18  MFDYVQDQSLFVYN----VMVKAYNK-----RGEKIHVFVVKAGMDYDDYVCNSLMDMYA 77
           +F  ++ Q L+  N    V++K+  +      GEK+H + VKAG+++D YV NSLM MYA
Sbjct: 33  LFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYA 92

Query: 78  ELSQIGSAKKLFDEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVV 137
            L +I    K+FDEMP  D VSWN +I+ YV   RFEDA+  FK M QESN K  E  +V
Sbjct: 93  SLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIV 152

Query: 138 STHSA---------------FLHDHHDFLLVLWTTVINGYVHGGCSPYRLCSVGSSRARE 197
           ST SA               F+    +  + +   +++ +   GC         S R + 
Sbjct: 153 STLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKN 212

Query: 198 MDSWMTMDAVVVSGNGKTGETPRLF 199
           +  W +M    VS  G+  E   LF
Sbjct: 213 VKCWTSMVFGYVS-TGRIDEARVLF 236

[Close]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot
Match: O64705 (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 8.5e-15
Identity = 65/195 (33.33%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 28  FVYNVMVKAYNKR-----GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDE 87
           F YN +  A  K      G  +H  + K G++ D ++ +SL+ MYA+  Q+G A+KLFDE
Sbjct: 133 FTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDE 192

Query: 88  MPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVS-----THSAFLHD 147
           +   D VSWN MI+GY      +DA++ F++M++E  E P E  +VS     +H   L  
Sbjct: 193 ITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFE-PDERTLVSMLGACSHLGDLRT 252

Query: 148 HHDFLLVLWTTVINGYVHGG---CSPYRLCSVGSSRAREMDSWMTMDAV-------VVSG 203
                 +  T  I      G    S Y  C    S  R  +  +  D V       V S 
Sbjct: 253 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 312

[Close]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot
Match: Q9ZUT5 (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 57/180 (31.67%), Postives = 81/180 (45.00%), Query Frame = 0


Query: 43  KIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDEMPTTDYVSWNVMIAGYVRCR 102
           ++H FV++ G D D +V N ++  Y +   I SA+K+FDEM   D VSWN MI+GY +  
Sbjct: 153 QVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSG 212

Query: 103 RFEDALNTFKEMQQESNEKPSEAAVVS----------------THSAFLHDHHDFLLVLW 162
            FED    +K M   S+ KP+   V+S                 H   + +H    L L 
Sbjct: 213 SFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLC 272

Query: 163 TTVINGYVHGGCSPYRLCSVGSSRAREMDSWMTMDAVV--VSGNGKTGETPRLFTEMELV 205
             VI  Y   G   Y           E DS +T  A++     +G   E   LF+EME +
Sbjct: 273 NAVIGFYAKCGSLDYARALF--DEMSEKDS-VTYGAIISGYMAHGLVKEAMALFSEMESI 329

[Close]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14
Identity = 60/198 (30.30%), Postives = 97/198 (48.99%), Query Frame = 0


Query: 22  VQDQSLFVYNVMVKAYNKRGEKIHVFVVKAGM-DYDDYVCNSLMDMYAELSQIGSAKKLF 81
           ++D S F+ N M+  Y   G  I  + +  GM  +D    NS++  +A+   I  A+ LF
Sbjct: 157 LEDDS-FIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLF 216

Query: 82  DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVS----------- 141
           DEMP  + VSWN MI+G+VR  RF+DAL+ F+EM QE + KP    +VS           
Sbjct: 217 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVKPDGFTMVSLLNACAYLGAS 276

Query: 142 -----THSAFLHDHHDFLLVLWTTVINGYVHGGCSPYRLCSVGSSRAREMDSWMTMDAVV 201
                 H   + +  +   ++ T +I+ Y   GC    L     +  +++  W +M  + 
Sbjct: 277 EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSM-ILG 336

Query: 202 VSGNGKTGETPRLFTEME 203
           ++ NG       LF+E+E
Sbjct: 337 LANNGFEERAMDLFSELE 351

[Close]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot
Match: Q7Y211 (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 40  RGEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDEMPTTDYVSWNVMIAGYV 99
           R E IH FVVK G+D D +V N+LMDMY+ L +I  A ++F +M   D V+WN MI GYV
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 100 RCRRFEDALNTFKEMQQESNEKPSEAAVVS 130
                EDAL    +MQ    +    A+ VS
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVS 512

[Close]

BLAST of Lag0034383 vs. ExPASy TrEMBL
Match: A0A6J1H7E9 (pentatricopeptide repeat-containing protein At1g31430 OS=Cucurbita moschata OX=3662 GN=LOC111461170 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 105/173 (60.69%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN R  ERMFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 81  MAFCADPSVGNLRYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWP 140

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 141 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 200

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 201 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 253

[Close]

BLAST of Lag0034383 vs. ExPASy TrEMBL
Match: A0A6J1KW17 (pentatricopeptide repeat-containing protein At1g31430 OS=Cucurbita maxima OX=3661 GN=LOC111498101 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 8.7e-47
Identity = 104/173 (60.12%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPS+GN    ERMFDY+Q  SLFVYNVMVKAY KR                    
Sbjct: 81  MAFCADPSVGNLHYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWP 140

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM  D YVCNSLMDMYAEL ++G+AKKLF
Sbjct: 141 DNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLF 200

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEMP  D VSWNV+I+GYVRCRRFEDA+N FKEMQQESNEKP EA VVST SA
Sbjct: 201 DEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSA 253

[Close]

BLAST of Lag0034383 vs. ExPASy TrEMBL
Match: A0A6J1CTE5 (pentatricopeptide repeat-containing protein At1g31430 OS=Momordica charantia OX=3673 GN=LOC111014415 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 8.7e-47
Identity = 104/173 (60.12%), Postives = 116/173 (67.05%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCADPSLGN R AER+FDY+Q+  LFVYNVMVKAY KR                    
Sbjct: 74  MAFCADPSLGNLRYAERVFDYIQEPCLFVYNVMVKAYAKRGIFRKVILLFQRLKEDGLWP 133

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEKIH FVVK GMD+D+YVCNSLMDMYAEL +I  A+KLF
Sbjct: 134 DNFTYPFVLKAIGCLRDLCHGEKIHGFVVKTGMDFDNYVCNSLMDMYAELGKIEYAEKLF 193

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEM T D VSWNV+I+GYVRCRRFEDA+NTFKEMQ+ESN KP EA +VST SA
Sbjct: 194 DEMHTKDSVSWNVLISGYVRCRRFEDAINTFKEMQRESNVKPGEAGIVSTLSA 246

[Close]

BLAST of Lag0034383 vs. ExPASy TrEMBL
Match: A0A1S3CPD2 (pentatricopeptide repeat-containing protein At1g31430 OS=Cucumis melo OX=3656 GN=LOC103502722 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 102/173 (58.96%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCAD SLGN R AE++FDYVQD SLFVYNVMVK Y KR                    
Sbjct: 74  MAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMVKMYAKRGLLRKVLLLFQQLREDQLWP 133

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM+ D+YVCNSLMDMY+EL  + +AKKLF
Sbjct: 134 DNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMNLDNYVCNSLMDMYSELGNVENAKKLF 193

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEM T D VSWNVMI+GYV CRRFEDA+NTF+EMQQE NEKP EA VVST SA
Sbjct: 194 DEMTTRDSVSWNVMISGYVGCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 246

[Close]

BLAST of Lag0034383 vs. ExPASy TrEMBL
Match: A0A5A7TXP7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00060 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 102/173 (58.96%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 1   MAFCADPSLGNWRCAERMFDYVQDQSLFVYNVMVKAYNKR-------------------- 60
           MAFCAD SLGN R AE++FDYVQD SLFVYNVMVK Y KR                    
Sbjct: 131 MAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMVKMYAKRGLLRKVLLLFQQLREDQLWP 190

Query: 61  --------------------GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLF 120
                               GEK+H FVVK GM+ D+YVCNSLMDMY+EL  + +AKKLF
Sbjct: 191 DNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMNLDNYVCNSLMDMYSELGNVENAKKLF 250

Query: 121 DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVSTHSA 134
           DEM T D VSWNVMI+GYV CRRFEDA+NTF+EMQQE NEKP EA VVST SA
Sbjct: 251 DEMTTRDSVSWNVMISGYVGCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 303

[Close]

BLAST of Lag0034383 vs. TAIR 10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = 0


Query: 18  MFDYVQDQSLFVYN----VMVKAYNK-----RGEKIHVFVVKAGMDYDDYVCNSLMDMYA 77
           +F  ++ Q L+  N    V++K+  +      GEK+H + VKAG+++D YV NSLM MYA
Sbjct: 33  LFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYA 92

Query: 78  ELSQIGSAKKLFDEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVV 137
            L +I    K+FDEMP  D VSWN +I+ YV   RFEDA+  FK M QESN K  E  +V
Sbjct: 93  SLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIV 152

Query: 138 STHSA---------------FLHDHHDFLLVLWTTVINGYVHGGCSPYRLCSVGSSRARE 197
           ST SA               F+    +  + +   +++ +   GC         S R + 
Sbjct: 153 STLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKN 212

Query: 198 MDSWMTMDAVVVSGNGKTGETPRLF 199
           +  W +M    VS  G+  E   LF
Sbjct: 213 VKCWTSMVFGYVS-TGRIDEARVLF 236

[Close]

BLAST of Lag0034383 vs. TAIR 10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-16
Identity = 65/195 (33.33%), Postives = 93/195 (47.69%), Query Frame = 0


Query: 28  FVYNVMVKAYNKR-----GEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDE 87
           F YN +  A  K      G  +H  + K G++ D ++ +SL+ MYA+  Q+G A+KLFDE
Sbjct: 133 FTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDE 192

Query: 88  MPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVS-----THSAFLHD 147
           +   D VSWN MI+GY      +DA++ F++M++E  E P E  +VS     +H   L  
Sbjct: 193 ITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFE-PDERTLVSMLGACSHLGDLRT 252

Query: 148 HHDFLLVLWTTVINGYVHGG---CSPYRLCSVGSSRAREMDSWMTMDAV-------VVSG 203
                 +  T  I      G    S Y  C    S  R  +  +  D V       V S 
Sbjct: 253 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQ 312

[Close]

BLAST of Lag0034383 vs. TAIR 10
Match: AT2G37310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 57/180 (31.67%), Postives = 81/180 (45.00%), Query Frame = 0


Query: 43  KIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDEMPTTDYVSWNVMIAGYVRCR 102
           ++H FV++ G D D +V N ++  Y +   I SA+K+FDEM   D VSWN MI+GY +  
Sbjct: 153 QVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSG 212

Query: 103 RFEDALNTFKEMQQESNEKPSEAAVVS----------------THSAFLHDHHDFLLVLW 162
            FED    +K M   S+ KP+   V+S                 H   + +H    L L 
Sbjct: 213 SFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLC 272

Query: 163 TTVINGYVHGGCSPYRLCSVGSSRAREMDSWMTMDAVV--VSGNGKTGETPRLFTEMELV 205
             VI  Y   G   Y           E DS +T  A++     +G   E   LF+EME +
Sbjct: 273 NAVIGFYAKCGSLDYARALF--DEMSEKDS-VTYGAIISGYMAHGLVKEAMALFSEMESI 329

[Close]

BLAST of Lag0034383 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 60/198 (30.30%), Postives = 97/198 (48.99%), Query Frame = 0


Query: 22  VQDQSLFVYNVMVKAYNKRGEKIHVFVVKAGM-DYDDYVCNSLMDMYAELSQIGSAKKLF 81
           ++D S F+ N M+  Y   G  I  + +  GM  +D    NS++  +A+   I  A+ LF
Sbjct: 157 LEDDS-FIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLF 216

Query: 82  DEMPTTDYVSWNVMIAGYVRCRRFEDALNTFKEMQQESNEKPSEAAVVS----------- 141
           DEMP  + VSWN MI+G+VR  RF+DAL+ F+EM QE + KP    +VS           
Sbjct: 217 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVKPDGFTMVSLLNACAYLGAS 276

Query: 142 -----THSAFLHDHHDFLLVLWTTVINGYVHGGCSPYRLCSVGSSRAREMDSWMTMDAVV 201
                 H   + +  +   ++ T +I+ Y   GC    L     +  +++  W +M  + 
Sbjct: 277 EQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSM-ILG 336

Query: 202 VSGNGKTGETPRLFTEME 203
           ++ NG       LF+E+E
Sbjct: 337 LANNGFEERAMDLFSELE 351

[Close]

BLAST of Lag0034383 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 40  RGEKIHVFVVKAGMDYDDYVCNSLMDMYAELSQIGSAKKLFDEMPTTDYVSWNVMIAGYV 99
           R E IH FVVK G+D D +V N+LMDMY+ L +I  A ++F +M   D V+WN MI GYV
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 100 RCRRFEDALNTFKEMQQESNEKPSEAAVVS 130
                EDAL    +MQ    +    A+ VS
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVS 512

The following BLAST results are available for this feature:

BLAST of Lag0034383 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592918.1	4.7e-47	60.69	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7025324.1	4.7e-47	60.69	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022960435.1	4.7e-47	60.69	pentatricopeptide repeat-containing protein At1g31430 [Cucurbita moschata] >XP_0...	[more]
XP_023513900.1	1.1e-46	60.12	pentatricopeptide repeat-containing protein At1g31430 isoform X1 [Cucurbita pepo...	[more]
XP_023513901.1	1.1e-46	60.12	pentatricopeptide repeat-containing protein At1g31430 isoform X2 [Cucurbita pepo...	[more]

BLAST of Lag0034383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C866	5.0e-23	35.12	Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX...	[more]
O64705	8.5e-15	33.33	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX...	[more]
Q9ZUT5	1.1e-14	31.67	Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	3.2e-14	30.30	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q7Y211	2.1e-13	45.56	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop...	[more]

BLAST of Lag0034383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7E9	2.3e-47	60.69	pentatricopeptide repeat-containing protein At1g31430 OS=Cucurbita moschata OX=3...	[more]
A0A6J1KW17	8.7e-47	60.12	pentatricopeptide repeat-containing protein At1g31430 OS=Cucurbita maxima OX=366...	[more]
A0A6J1CTE5	8.7e-47	60.12	pentatricopeptide repeat-containing protein At1g31430 OS=Momordica charantia OX=...	[more]
A0A1S3CPD2	4.8e-45	58.96	pentatricopeptide repeat-containing protein At1g31430 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7TXP7	4.8e-45	58.96	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lag0034383 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31430.1	3.5e-24	35.12	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G34400.1	6.0e-16	33.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G37310.1	7.9e-16	31.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G42920.1	2.3e-15	30.30	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G57430.1	1.5e-14	45.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 89..117 e-value: 2.9E-8 score: 33.4 coord: 59..83 e-value: 0.0036 score: 17.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 58..84 e-value: 3.4E-4 score: 18.6 coord: 89..123 e-value: 1.1E-8 score: 32.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 87..121 score: 11.125777
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 8..194 e-value: 5.0E-22 score: 80.7
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..38 coord: 39..133
None	No IPR available	PANTHER	PTHR47928:SF123	OS06G0597500 PROTEIN	coord: 1..38 coord: 39..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034383.1	Lag0034383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding