Lag0034378 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034378
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SOUL heme-binding family protein
Location	chr3: 6812562 .. 6813753 (-)
RNA-Seq Expression	Lag0034378
Synteny	Lag0034378

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGAGTGACCCTTGTAACTTATATGTTGTGAGGTCTCCAATTAGCGATGAGTGGAGTGACCCTTGAAGCTTATATATTATGAGGTCTCCACCAATCTTTCCGACGTGGGATCCTCAACAAACATCCACCTTTCCTATTTTCATGGCGGATTGAGAATTTCAATTCCTAATTCATCTTTTCAATGGTAGGATGGTTGGGATTCAGTTCGAAATAATGACTACTTTTCTCTGAAAGGGCTGTGGGATGTAATTAAACAGGTATGTATTCAAGTTAATCATCCACACGAGAGGAGATTTGATTTGATTTCTGATGTATTCTTGTGTCTTCAGTTTCGGTTTTATGAGACTCCAGAATTGGAATCGCCCAAATATCAGATATTGAAAAGGACTGCTAATTATGAGGTCTGTTTGTGTTTATGCTACCTCCTCTGTTCTTGGTCTTCTTTCCCCTGCTGAGTTGATGATTATAAGAATGTTGAAGCTTTCGATCTTAGGTTGAGTTTTGAAAGTGCCTTCATTTCATTGCAAGAAATCTGAGATGATATGCAGCTTCTAGCATTAAATTTAGATTTCAGTAATCATATAGAGATTTGTATCAATTTATGTTCAGGTGAGAAAATATTCACCATTTACACTGGTTGAAACGACTGGTGACAAGCTCTCTTGGTTTGGTGGATTCAATACGGTTGCAGGGTTAGTTTCTCTCCCCCCTTTCTTTCTCCCCCACCCAAACGCACATGCTTCAAACGTGGTCTTTGTCTTTGTTGACTCACACCGGATTTCCTGTGCCCCATACAACTTCCATCCTATTAGATAACATGAAGTTACATTTCAAAATTTATTGATAATGAGAGGAGTAATCGATGTGTATCTTATAAACGAGGTCTCCACTTATCTTTTCAATTTGAGATCTTAACCGGTCCAAACTATCCCCAAAAGTTTAACTAATCTTATATCAATACTTTAACTGTAACACCCGAGTTAGGAGGGGTACATGAATGAACCGAGGCCACATCCGAATGAGAGGGATCCTGAGGACATGAAAGTATGTTCAAGATAAGCTTAAAAGAATTGATAGATACTACCTATATCAACAAGGTGCACCTTCCTTTTCGATGACTCAATTATAGGAACTTTGAAGTTAAGCGTGCTTGGCTTGGAGAAGTTCTATGTTGGGTGACCTCCTAG

mRNA sequence

ATGAGTGGAGTGACCCTTGATGGTTGGGATTCAGTTCGAAATAATGACTACTTTTCTCTGAAAGGGCTGTGGGATGTAATTAAACAGTTTCGGTTTTATGAGACTCCAGAATTGGAATCGCCCAAATATCAGATATTGAAAAGGACTGCTAATTATGAGGTGAGAAAATATTCACCATTTACACTGGTTGAAACGACTGGTGACAAGCTCTCTTGGTTTGGTGGATTCAATACGGTTGCAGGGAACTTTGAAGTTAAGCGTGCTTGGCTTGGAGAAGTTCTATGTTGGGTGACCTCCTAG

Coding sequence (CDS)

ATGAGTGGAGTGACCCTTGATGGTTGGGATTCAGTTCGAAATAATGACTACTTTTCTCTGAAAGGGCTGTGGGATGTAATTAAACAGTTTCGGTTTTATGAGACTCCAGAATTGGAATCGCCCAAATATCAGATATTGAAAAGGACTGCTAATTATGAGGTGAGAAAATATTCACCATTTACACTGGTTGAAACGACTGGTGACAAGCTCTCTTGGTTTGGTGGATTCAATACGGTTGCAGGGAACTTTGAAGTTAAGCGTGCTTGGCTTGGAGAAGTTCTATGTTGGGTGACCTCCTAG

Protein sequence

MSGVTLDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVETTGDKLSWFGGFNTVAGNFEVKRAWLGEVLCWVTS

Homology

[Close]

BLAST of Lag0034378 vs. NCBI nr
Match: XP_022144956.1 (uncharacterized protein LOC111014503 isoform X1 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-26
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 6   LDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVET 65
           +D WDS++NNDYFSL+GL DV KQ RFY+TPELESPKY+ILKRTANYEVRKY+PF +VET
Sbjct: 185 VDLWDSIQNNDYFSLEGLLDVFKQLRFYKTPELESPKYEILKRTANYEVRKYTPFVVVET 244

Query: 66  TGDKLSWFGGFNTVAG 82
           +GDKLS   GFNTVAG
Sbjct: 245 SGDKLSGSAGFNTVAG 260

[Close]

BLAST of Lag0034378 vs. NCBI nr
Match: EOY30942.1 (SOUL heme-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6   LDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVET 65
           LD WDS+ NNDYFSL+GLWDV +Q R Y+TP+LE+P+YQILKRTANYEVRKY+PF +VET
Sbjct: 173 LDFWDSIENNDYFSLEGLWDVFRQLRIYKTPDLETPRYQILKRTANYEVRKYTPFIVVET 232

Query: 66  TGDKLSWFGGFNTVAG 82
            GDKLS   GFNTVAG
Sbjct: 233 DGDKLSGSTGFNTVAG 248

[Close]

BLAST of Lag0034378 vs. NCBI nr
Match: XP_017983851.1 (PREDICTED: heme-binding-like protein At3g10130, chloroplastic isoform X3 [Theobroma cacao])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6   LDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVET 65
           LD WDS+ NNDYFSL+GLWDV +Q R Y+TP+LE+P+YQILKRTANYEVRKY+PF +VET
Sbjct: 35  LDFWDSIENNDYFSLEGLWDVFRQLRIYKTPDLETPRYQILKRTANYEVRKYTPFIVVET 94

Query: 66  TGDKLSWFGGFNTVAG 82
            GDKLS   GFNTVAG
Sbjct: 95  DGDKLSGSTGFNTVAG 110

[Close]

BLAST of Lag0034378 vs. NCBI nr
Match: EOY30943.1 (SOUL heme-binding family protein isoform 3 [Theobroma cacao])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6   LDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVET 65
           LD WDS+ NNDYFSL+GLWDV +Q R Y+TP+LE+P+YQILKRTANYEVRKY+PF +VET
Sbjct: 187 LDFWDSIENNDYFSLEGLWDVFRQLRIYKTPDLETPRYQILKRTANYEVRKYTPFIVVET 246

Query: 66  TGDKLSWFGGFNTVAG 82
            GDKLS   GFNTVAG
Sbjct: 247 DGDKLSGSTGFNTVAG 262

[Close]

BLAST of Lag0034378 vs. NCBI nr
Match: EOY30944.1 (SOUL heme-binding family protein isoform 4 [Theobroma cacao])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6   LDGWDSVRNNDYFSLKGLWDVIKQFRFYETPELESPKYQILKRTANYEVRKYSPFTLVET 65
           LD WDS+ NNDYFSL+GLWDV +Q R Y+TP+LE+P+YQILKRTANYEVRKY+PF +VET
Sbjct: 173 LDFWDSIENNDYFSLEGLWDVFRQLRIYKTPDLETPRYQILKRTANYEVRKYTPFIVVET 232

Query: 66  TGDKLSWFGGFNTVAG 82
            GDKLS   GFNTVAG
Sbjct: 233 DGDKLSGSTGFNTVAG 248

The following BLAST results are available for this feature:

BLAST of Lag0034378 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144956.1	3.8e-26	77.63	uncharacterized protein LOC111014503 isoform X1 [Momordica charantia]	[more]
EOY30942.1	1.1e-25	75.00	SOUL heme-binding family protein isoform 2 [Theobroma cacao]	[more]
XP_017983851.1	1.1e-25	75.00	PREDICTED: heme-binding-like protein At3g10130, chloroplastic isoform X3 [Theobr...	[more]
EOY30943.1	1.1e-25	75.00	SOUL heme-binding family protein isoform 3 [Theobroma cacao]	[more]
EOY30944.1	1.1e-25	75.00	SOUL heme-binding family protein isoform 4 [Theobroma cacao]	[more]

BLAST of Lag0034378 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006917	SOUL haem-binding protein	PFAM	PF04832	SOUL	coord: 38..72 e-value: 1.5E-6 score: 28.4
IPR006917	SOUL haem-binding protein	PANTHER	PTHR11220	HEME-BINDING PROTEIN-RELATED	coord: 5..81
IPR011256	Regulatory factor, effector binding domain superfamily	GENE3D	3.20.80.10	Regulatory factor, effector binding domain	coord: 37..84 e-value: 4.2E-5 score: 25.2
IPR011256	Regulatory factor, effector binding domain superfamily	SUPERFAMILY	55136	Probable bacterial effector-binding domain	coord: 29..76
None	No IPR available	PANTHER	PTHR11220:SF50	SOUL HEME-BINDING FAMILY PROTEIN	coord: 5..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034378.1	Lag0034378.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity