Lag0034113 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034113
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	dCTP pyrophosphatase 1
Location	chr3: 4521706 .. 4522218 (-)
RNA-Seq Expression	Lag0034113
Synteny	Lag0034113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTCGCTGTTCTTACGAACCTGAGAAAACCGCCAAAGACGTCTCACTGCAAGAACTTCGAGACAGACTCGCAGAGTTCGCCCGAGTGCGAGGATGGGAGCAATACCACAGCCCTAGAAACCTGCTCCTAGCACTTGTAATCAATCAAACAAACAACACATTGAAATTAACATCTCGATCTCCAATTTCGACCTAAAAACAAACAAAATCACTACACAGAATAGGAATAATCTCGATCTTACATGTTGTCGTTGTTCGCTTGCAGGTCGGTGAGGTCGGAGAGCTATCGGAGATATTCCAGTGGAAGGGGGAAGTGGAGAGGGGGCTGCCGAACTGGAGCGCGGCGGAGAAAGAGCATTTGGAAGAAGAAGTGTCGGATGTGTTGCTCTATTTGGTGCGTCTCGCCGACGTGTGTGGCCTTGATCTCGGCCATGCGGCGCTCTCGAAGATCGTAAAAAATGCGAACAAGTATCCGGTCGCCGCCGCTTTCGCTCGCGCGCTGCCGTGA

mRNA sequence

ATGGAGAGTCGCTGTTCTTACGAACCTGAGAAAACCGCCAAAGACGTCTCACTGCAAGAACTTCGAGACAGACTCGCAGAGTTCGCCCGAGTGCGAGGATGGGAGCAATACCACAGCCCTAGAAACCTGCTCCTAGCACTTGTCGGTGAGGTCGGAGAGCTATCGGAGATATTCCAGTGGAAGGGGGAAGTGGAGAGGGGGCTGCCGAACTGGAGCGCGGCGGAGAAAGAGCATTTGGAAGAAGAAGTGTCGGATGTGTTGCTCTATTTGGTGCGTCTCGCCGACGTGTGTGGCCTTGATCTCGGCCATGCGGCGCTCTCGAAGATCGTAAAAAATGCGAACAAGTATCCGGTCGCCGCCGCTTTCGCTCGCGCGCTGCCGTGA

Coding sequence (CDS)

ATGGAGAGTCGCTGTTCTTACGAACCTGAGAAAACCGCCAAAGACGTCTCACTGCAAGAACTTCGAGACAGACTCGCAGAGTTCGCCCGAGTGCGAGGATGGGAGCAATACCACAGCCCTAGAAACCTGCTCCTAGCACTTGTCGGTGAGGTCGGAGAGCTATCGGAGATATTCCAGTGGAAGGGGGAAGTGGAGAGGGGGCTGCCGAACTGGAGCGCGGCGGAGAAAGAGCATTTGGAAGAAGAAGTGTCGGATGTGTTGCTCTATTTGGTGCGTCTCGCCGACGTGTGTGGCCTTGATCTCGGCCATGCGGCGCTCTCGAAGATCGTAAAAAATGCGAACAAGTATCCGGTCGCCGCCGCTTTCGCTCGCGCGCTGCCGTGA

Protein sequence

MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWKGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAAAFARALP

Homology

[Close]

BLAST of Lag0034113 vs. NCBI nr
Match: XP_038880679.1 (dCTP pyrophosphatase 1-like [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60
           MES  SYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW
Sbjct: 1   MESH-SYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60

Query: 61  KGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAA 120
           KGEVERGLPNWSAAE+EHLEEEVSDVLLYLVRLADVCGLDLGHAALSK+VKNANKYPV A
Sbjct: 61  KGEVERGLPNWSAAEREHLEEEVSDVLLYLVRLADVCGLDLGHAALSKLVKNANKYPV-A 120

Query: 121 AFARALP 128
           AFARALP
Sbjct: 121 AFARALP 125

[Close]

BLAST of Lag0034113 vs. NCBI nr
Match: XP_004138182.1 (dCTP pyrophosphatase 1 [Cucumis sativus] >KGN63700.1 hypothetical protein Csa_013122 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60
           ME+R SYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW
Sbjct: 1   MENR-SYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60

Query: 61  KGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAA 120
           KGEVERGLPNWSAAE+EHLEEEVSDVLLYLVRLADVCGLDLGHAALSK+VKNANKYPV A
Sbjct: 61  KGEVERGLPNWSAAEREHLEEEVSDVLLYLVRLADVCGLDLGHAALSKLVKNANKYPV-A 120

Query: 121 AFARALP 128
           AF RALP
Sbjct: 121 AFTRALP 125

[Close]

BLAST of Lag0034113 vs. NCBI nr
Match: XP_022921755.1 (dCTP pyrophosphatase 1-like [Cucurbita moschata] >XP_023515610.1 dCTP pyrophosphatase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60
           ME+R SYEPEKTAKDVSLQELRD LAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW
Sbjct: 1   MENR-SYEPEKTAKDVSLQELRDMLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60

Query: 61  KGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAA 120
           KGEVERGLPNWSAAE+EHLEEEVSDVLLYLVRLADVCGLDLGHAALSK+VKNANKYPV A
Sbjct: 61  KGEVERGLPNWSAAEREHLEEEVSDVLLYLVRLADVCGLDLGHAALSKLVKNANKYPV-A 120

Query: 121 AFARALP 128
           AFARALP
Sbjct: 121 AFARALP 125

[Close]

BLAST of Lag0034113 vs. NCBI nr
Match: XP_022933743.1 (dCTP pyrophosphatase 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 2.8e-58
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60
           MESR SYEPEKTAKDVSL ELRDRLAEFA+VRGWEQYHSPRNLLLALVGEVGELSEIFQW
Sbjct: 1   MESR-SYEPEKTAKDVSLHELRDRLAEFAQVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60

Query: 61  KGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAA 120
           KGEVERGLPNWSAAE+EHLEEE+SDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPV A
Sbjct: 61  KGEVERGLPNWSAAEREHLEEELSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPV-A 120

Query: 121 AFARALP 128
           AFARALP
Sbjct: 121 AFARALP 125

[Close]

BLAST of Lag0034113 vs. NCBI nr
Match: XP_022987438.1 (dCTP pyrophosphatase 1-like [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 8.2e-58
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60
           ME+R SYEPEKTAKDVSLQELRD L EFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW
Sbjct: 1   MENR-SYEPEKTAKDVSLQELRDMLEEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQW 60

Query: 61  KGEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAA 120
           KGEVERGLPNWSAAE+EHLEEEVSDVLLYLVRLADVCGLDLGHAALSK+VKNANKYPV A
Sbjct: 61  KGEVERGLPNWSAAEREHLEEEVSDVLLYLVRLADVCGLDLGHAALSKLVKNANKYPV-A 120

Query: 121 AFARALP 128
           AFARALP
Sbjct: 121 AFARALP 125

[Close]

BLAST of Lag0034113 vs. ExPASy Swiss-Prot
Match: Q91VC0 (dCTP pyrophosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dctpp1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 6   SYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWKGEVE 65
           S+ PE T     L+++R   AEFA  R WEQ+H PRNLLLALVGEVGEL+E+FQWK + E
Sbjct: 24  SFSPEPT-----LEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDAE 83

Query: 66  RGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPV 119
            G   W   E+  L+EE+SDVL+YLV LA  C +DL  A +SK+  N  +YPV
Sbjct: 84  PGPQAWQPKERAALQEELSDVLIYLVALAARCHVDLPRAVISKMDTNRQRYPV 131

[Close]

BLAST of Lag0034113 vs. ExPASy Swiss-Prot
Match: Q9QY93 (dCTP pyrophosphatase 1 OS=Mus musculus OX=10090 GN=Dctpp1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-26
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 2   ESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWK 61
           E   +  P + + + +L+++R   AEFA  R WEQ+H PRNLLLALVGEVGEL+E+FQWK
Sbjct: 15  EDSAAARPFRFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWK 74

Query: 62  GEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPV 119
            + E G   W   E+  L+EE+SDVL+YLV LA  C +DL  A +SK+  N  +YPV
Sbjct: 75  SDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYPV 131

[Close]

BLAST of Lag0034113 vs. ExPASy Swiss-Prot
Match: Q9H773 (dCTP pyrophosphatase 1 OS=Homo sapiens OX=9606 GN=DCTPP1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-26
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 4   RCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWKGE 63
           R S+ PE T     L+++R   AEFA  R WEQ+H PRNLLLALVGEVGEL+E+FQWK +
Sbjct: 22  RFSFSPEPT-----LEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTD 81

Query: 64  VERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPVAAA 122
            E G   WS  E+  L+EE+SDVL+YLV LA  C +DL  A LSK+  N  +YP   A
Sbjct: 82  GEPGPQGWSPRERAALQEELSDVLIYLVALAARCRVDLPLAVLSKMDINRRRYPAHLA 134

[Close]

BLAST of Lag0034113 vs. ExPASy Swiss-Prot
Match: Q32KY6 (dCTP pyrophosphatase 1 OS=Bos taurus OX=9913 GN=DCTPP1 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-26
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 2   ESRCSYEPEKTAKDVSLQELRDRLAEFARVRGWEQYHSPRNLLLALVGEVGELSEIFQWK 61
           ES  +  P   + + +L+++R   AEFA  R WEQ+H PRNLLLALVGEVGEL+E+FQWK
Sbjct: 14  ESTTATGPFSFSSEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWK 73

Query: 62  GEVERGLPNWSAAEKEHLEEEVSDVLLYLVRLADVCGLDLGHAALSKIVKNANKYPV 119
            + E G   WS  E+  L+EE+SD+L+YLV LA  C +DL  A L K+  N  +YPV
Sbjct: 74  PDEEPGPQAWSPRERAALQEELSDILIYLVALAARCRVDLPQAVLCKMDTNRRRYPV 130

The following BLAST results are available for this feature:

BLAST of Lag0034113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880679.1	7.4e-59	96.06	dCTP pyrophosphatase 1-like [Benincasa hispida]	[more]
XP_004138182.1	1.3e-58	95.28	dCTP pyrophosphatase 1 [Cucumis sativus] >KGN63700.1 hypothetical protein Csa_01...	[more]
XP_022921755.1	2.2e-58	95.28	dCTP pyrophosphatase 1-like [Cucurbita moschata] >XP_023515610.1 dCTP pyrophosph...	[more]
XP_022933743.1	2.8e-58	95.28	dCTP pyrophosphatase 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022987438.1	8.2e-58	94.49	dCTP pyrophosphatase 1-like [Cucurbita maxima]	[more]

BLAST of Lag0034113 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91VC0	1.7e-26	53.98	dCTP pyrophosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dctpp1 PE=2 SV=1	[more]
Q9QY93	2.3e-26	50.43	dCTP pyrophosphatase 1 OS=Mus musculus OX=10090 GN=Dctpp1 PE=1 SV=1	[more]
Q9H773	3.9e-26	54.24	dCTP pyrophosphatase 1 OS=Homo sapiens OX=9606 GN=DCTPP1 PE=1 SV=1	[more]
Q32KY6	5.0e-26	51.28	dCTP pyrophosphatase 1 OS=Bos taurus OX=9913 GN=DCTPP1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1080		coord: 4..112 e-value: 7.3E-39 score: 134.1
None	No IPR available	PANTHER	PTHR14552:SF24	DCTP PYROPHOSPHATASE 1	coord: 9..121
None	No IPR available	PANTHER	PTHR14552	FAMILY NOT NAMED	coord: 9..121
None	No IPR available	SUPERFAMILY	101386	all-alpha NTP pyrophosphatases	coord: 16..120
IPR025984	dCTP pyrophosphatase 1	PIRSF	PIRSF029826	UCP029826_pph	coord: 8..125 e-value: 1.5E-45 score: 151.8
IPR025984	dCTP pyrophosphatase 1	PFAM	PF12643	MazG-like	coord: 50..121 e-value: 3.9E-8 score: 33.4
IPR025984	dCTP pyrophosphatase 1	CDD	cd11537	NTP-PPase_RS21-C6_like	coord: 22..112 e-value: 5.6455E-44 score: 136.882

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034113.1	Lag0034113.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006253	dCTP catabolic process
biological_process	GO:0042262	DNA protection
biological_process	GO:0009143	nucleoside triphosphate catabolic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0047840	dCTP diphosphatase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0047429	nucleoside-triphosphate diphosphatase activity