Lag0033912 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033912
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	galacturonokinase
Location	chr3: 2907901 .. 2910168 (-)
RNA-Seq Expression	Lag0033912
Synteny	Lag0033912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGCCATCCTGGCCTTCGGAGGAAGAGGTAATTCTTAAAGCTTGTCTTGATTTGCAACGTGGTTGCATTGTTCTCGTGTGGATTTCGTTGGTTTTTGGATTGTTTGTTGTTCGTTTTGATTGGTTTGGATGTTTTCGACACTGGCGTTTTACGTGTTTTGTTAAATAATTTGTGGCTGGAAAACTCGAGTTGATTTTGATTCACTTAGTATATTCTGTCTTGGATCCGTGCATCGTTGGTTAGCTCAATGCTATTGCTATTATGGTGATCGAATGGGAGATTGTTCGTGGCATGATTCTTACTATCTTTTGATTTTATATTGGATCTCTCCTGGTTCATTTGTAATTGACCTGCCTGGTTGTTTTAGCTAAATGGAATCAAGAAGATCGTTTCGGAAATGTCCAAGAGAAGCACGGAGGACGTTCGTATAGTTGTCTCTCCGTATCGAATTTGTCCATTGGGAGCTCACATTGATCATCAGGTTAGTCCGCTATGATGGATTCGAAAAATTTGCATCCAGAGTCTCGTTGAAGTTCATATCGATGCAATTAAGTCAGTAAGAGTAGTGGCATTTTGCTTGATTTTCATTTATTAGCTTTATATTAGTTAATAATGGAGTTGATTTCACTTTCTGGAATTTATTTCTAAGATGACATTGAAGTTCTTTTGAACTCTTCTGTTGGTCGCTAGGGTGGCAATGTTTCAGCGATGGCGATAAATAAGGGAGTGCTTTTAGGATTTGTTCCTTCTGGCGATGCTCAGGTAATGATCGTGCAATTACAAAATTCTCTGTAGCCATTTAATTTACCGTAGGATTCAGAGTCTCAAAATCAGCTACTCACATATCGATTAAAAGGAAAAATGACATGCGATACCTGTTACTTTTGATCTAAATGGATGTTTAAAACCATGGTTGTTATGTATATTGCCAGTATTTTAGTTTCTTGGGTTTTTCAACTCCAGCCTTTTAACTTTCTCTGCACATGAAGATATTGATCTCTACCTGTTTATATTTCTTCACAAATGATCTAATATGCCAGAATAACATATTTGGAGCTCTTGTAGGTTGTACTCCGTTCGGGTCAGTTCAAAGGAGATGTTAATTTCAGGTGTGATATACTCTCTAAATTTTTTTTCTTCCATATCTTACAACCCTCGTGGAAGTATGCATCAAATAAAACCCTGGTAATAGTTTTGTCATTTATAGGTGAAAACTGCAGGCTTTTCATTCCTGAATTCATGTAAATAAGTCATCGCCATAATATTGCCTATAGGCTGAGATGAAATAATCCTAGTTCCATGCAATATCAAATGAAAAGCTTGTAATGCTGCTGTGGTGGTGAATTGTCTGTGAAACAGCCCAATGAAGCCAATTCATGTTTACTAGAAATAACTTAATTACTAGCTTAACGAGGCTGTCTCCAACCGGGTCATTCCCTCCCTCTGCATCCAGTCATTCTCAAAGAAAGTTTCTACTGTAGTTTGTTCGATTCTTTCTAACCATTTCTGCTTAGGTTGAAGATCTATTCTCCTTGGATCTTATTGCTTGCTTTTATTATATCACTATATAGCTTAGAATACAAAGGGGATGAAAATTATATGTATAAAGTTTCAATTTGTAAGTTCCTTTTCCTTTCTAAACTAGAATTTTTTGTTATTTTGTATTTCCCCCAAATTTTGTGAGAAATGAAATCATGCTTGCTTCAAATGATGTAAAATGCAGTAGGACTTGTGTGTCTACATTTTCAAAGAGGTCTTCAAATGCATAATTTTCTTGCACACTGTTACTATACATGTTATCCCATAATGACCATTCATTGACTTATGTCGTGAAAACTGCAGAGTTGATGAAAACCAGAATCCAGACCACACTAGGAACAAGAAGGAAGGGACTGATGCAAATGGTCATGTTAAATTGCAAGAGGAAAATAACTGGGGAAGGTATGCTAGAGGAGCAGTGTATGCACTGCAAAAAAAGAACAACGTCTTTTTCAGGTTAGAGACTTTTCTTTGTTTTGGATTTCATTACTAGTTTTTGATGAACCCAGTTTAAAAGTCAGTGCCAAATAGTATATAAAATTGCACAATGCATATTGTTTTCTTTCATTGAACAATTAACTTGTTCTAGACCAATTAGCAGCCAAAGTAGTTCAGCTTTATAACTTGGAGACTTGGAGTCATTATCTAATATTTTGGCTGCAAGCATCAACTGGAATTTGGAATGCCCTTAGGTTGTCTGTTTTGGCTGATGCTTTTGAATGA

mRNA sequence

ATGGGGAAGCCATCCTGGCCTTCGGAGGAAGAGCTAAATGGAATCAAGAAGATCGTTTCGGAAATGTCCAAGAGAAGCACGGAGGACGTTCGTATAGTTGTCTCTCCGTATCGAATTTGTCCATTGGGAGCTCACATTGATCATCAGGGTGGCAATGTTTCAGCGATGGCGATAAATAAGGGAGTGCTTTTAGGATTTGTTCCTTCTGGCGATGCTCAGGTTGTACTCCGTTCGGGTCAGTTCAAAGGAGATGTTAATTTCAGAGTTGATGAAAACCAGAATCCAGACCACACTAGGAACAAGAAGGAAGGGACTGATGCAAATGGTCATGTTAAATTGCAAGAGGAAAATAACTGGGGAAGGTATGCTAGAGGAGCAGTGTATGCACTGCAAAAAAAGAACAACGTCTTTTTCAGGTTGTCTGTTTTGGCTGATGCTTTTGAATGA

Coding sequence (CDS)

ATGGGGAAGCCATCCTGGCCTTCGGAGGAAGAGCTAAATGGAATCAAGAAGATCGTTTCGGAAATGTCCAAGAGAAGCACGGAGGACGTTCGTATAGTTGTCTCTCCGTATCGAATTTGTCCATTGGGAGCTCACATTGATCATCAGGGTGGCAATGTTTCAGCGATGGCGATAAATAAGGGAGTGCTTTTAGGATTTGTTCCTTCTGGCGATGCTCAGGTTGTACTCCGTTCGGGTCAGTTCAAAGGAGATGTTAATTTCAGAGTTGATGAAAACCAGAATCCAGACCACACTAGGAACAAGAAGGAAGGGACTGATGCAAATGGTCATGTTAAATTGCAAGAGGAAAATAACTGGGGAAGGTATGCTAGAGGAGCAGTGTATGCACTGCAAAAAAAGAACAACGTCTTTTTCAGGTTGTCTGTTTTGGCTGATGCTTTTGAATGA

Protein sequence

MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINKGVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWGRYARGAVYALQKKNNVFFRLSVLADAFE

Homology

[Close]

BLAST of Lag0033912 vs. NCBI nr
Match: XP_038879629.1 (galacturonokinase isoform X1 [Benincasa hispida])

HSP 1 Score: 244.6 bits (623), Expect = 5.4e-61
Identity = 119/135 (88.15%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60
           MGKPSWPSE+ELNGIK IVSEMSKRS EDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK
Sbjct: 1   MGKPSWPSEDELNGIKTIVSEMSKRSKEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60

Query: 61  GVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWG 120
           GVLLGFVPSGDAQVVLRS QFKGDVNFRVDENQ P+H  NKKEGT+ANGH KL+++NNWG
Sbjct: 61  GVLLGFVPSGDAQVVLRSAQFKGDVNFRVDENQYPNHFINKKEGTNANGHAKLKDDNNWG 120

Query: 121 RYARGAVYALQKKNN 136
           RYARGAVYALQ+K +
Sbjct: 121 RYARGAVYALQQKEH 135

[Close]

BLAST of Lag0033912 vs. NCBI nr
Match: XP_038879630.1 (galacturonokinase isoform X2 [Benincasa hispida])

HSP 1 Score: 244.6 bits (623), Expect = 5.4e-61
Identity = 119/135 (88.15%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60
           MGKPSWPSE+ELNGIK IVSEMSKRS EDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK
Sbjct: 1   MGKPSWPSEDELNGIKTIVSEMSKRSKEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60

Query: 61  GVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWG 120
           GVLLGFVPSGDAQVVLRS QFKGDVNFRVDENQ P+H  NKKEGT+ANGH KL+++NNWG
Sbjct: 61  GVLLGFVPSGDAQVVLRSAQFKGDVNFRVDENQYPNHFINKKEGTNANGHAKLKDDNNWG 120

Query: 121 RYARGAVYALQKKNN 136
           RYARGAVYALQ+K +
Sbjct: 121 RYARGAVYALQQKEH 135

[Close]

BLAST of Lag0033912 vs. NCBI nr
Match: XP_004149677.1 (galacturonokinase [Cucumis sativus] >KGN65517.1 hypothetical protein Csa_019593 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 7.8e-60
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60
           MGKPSWPSEEELNGIK IVSEMSKRS EDVR+VVSPYRICPLGAHIDHQGGNVSAMAINK
Sbjct: 1   MGKPSWPSEEELNGIKTIVSEMSKRSKEDVRVVVSPYRICPLGAHIDHQGGNVSAMAINK 60

Query: 61  GVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWG 120
           GVLLGFVPSGD QVVLRS QFKGDVNFRVDE   P+H  NKKEGT+ NGH KLQE+NNWG
Sbjct: 61  GVLLGFVPSGDVQVVLRSAQFKGDVNFRVDEKLYPNHCSNKKEGTNENGHAKLQEDNNWG 120

Query: 121 RYARGAVYALQKKNN 136
           RYARGAVYALQ+K +
Sbjct: 121 RYARGAVYALQEKEH 135

[Close]

BLAST of Lag0033912 vs. NCBI nr
Match: KAA0058173.1 (galacturonokinase [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60
           MGKPSWPSEEELNGIK IVS+MSKRS EDVR+VVSPYRICPLGAHIDHQGGNVSAMAINK
Sbjct: 134 MGKPSWPSEEELNGIKTIVSDMSKRSKEDVRVVVSPYRICPLGAHIDHQGGNVSAMAINK 193

Query: 61  GVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWG 120
           GVLLGFVPSGD QVVLRS QFKGDVNFRVDE   P+   NKKEGT+ANG  KLQE+NNWG
Sbjct: 194 GVLLGFVPSGDVQVVLRSAQFKGDVNFRVDEKLYPNLCSNKKEGTNANGLAKLQEDNNWG 253

Query: 121 RYARGAVYALQKKNN 136
           RYARGAVYALQ+K +
Sbjct: 254 RYARGAVYALQEKEH 268

[Close]

BLAST of Lag0033912 vs. NCBI nr
Match: XP_016901439.1 (PREDICTED: galacturonokinase [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MGKPSWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINK 60
           MGKPSWPSEEELNGIK IVS+MSKRS EDVR+VVSPYRICPLGAHIDHQGGNVSAMAINK
Sbjct: 1   MGKPSWPSEEELNGIKTIVSDMSKRSKEDVRVVVSPYRICPLGAHIDHQGGNVSAMAINK 60

Query: 61  GVLLGFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWG 120
           GVLLGFVPSGD QVVLRS QFKGDVNFRVDE   P+   NKKEGT+ANG  KLQE+NNWG
Sbjct: 61  GVLLGFVPSGDVQVVLRSAQFKGDVNFRVDEKLYPNLCSNKKEGTNANGLAKLQEDNNWG 120

Query: 121 RYARGAVYALQKKNN 136
           RYARGAVYALQ+K +
Sbjct: 121 RYARGAVYALQEKEH 135

[Close]

BLAST of Lag0033912 vs. ExPASy Swiss-Prot
Match: Q8VYG2 (Galacturonokinase OS=Arabidopsis thaliana OX=3702 GN=GALAK PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 84/132 (63.64%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 5   SWPSEEELNGIKKIVSEMSKRSTEDVRIVVSPYRICPLGAHIDHQGGNVSAMAINKGVLL 64
           SWP++ ELN IK+ V++MS R   +VR+VV+PYRICPLGAHIDHQGG VSAM INKG+LL
Sbjct: 2   SWPTDSELNSIKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILL 61

Query: 65  GFVPSGDAQVVLRSGQFKGDVNFRVDENQNPDHTRNKKEGTDANGHVKLQEENNWGRYAR 124
           GFVPSGD QV LRS QF+G+V FRVDE Q+P    NK     A+     +E++ WG YAR
Sbjct: 62  GFVPSGDTQVQLRSAQFEGEVCFRVDEIQHPIGLANK---NGASTPSPSKEKSIWGTYAR 121

Query: 125 GAVYALQ--KKN 135
           GAVYALQ  KKN
Sbjct: 122 GAVYALQSSKKN 130

The following BLAST results are available for this feature:

BLAST of Lag0033912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879629.1	5.4e-61	88.15	galacturonokinase isoform X1 [Benincasa hispida]	[more]
XP_038879630.1	5.4e-61	88.15	galacturonokinase isoform X2 [Benincasa hispida]	[more]
XP_004149677.1	7.8e-60	86.67	galacturonokinase [Cucumis sativus] >KGN65517.1 hypothetical protein Csa_019593 ...	[more]
KAA0058173.1	1.6e-57	85.19	galacturonokinase [Cucumis melo var. makuwa]	[more]
XP_016901439.1	1.6e-57	85.19	PREDICTED: galacturonokinase [Cucumis melo]	[more]

BLAST of Lag0033912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYG2	3.0e-38	63.64	Galacturonokinase OS=Arabidopsis thaliana OX=3702 GN=GALAK PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 19..145 e-value: 5.0E-16 score: 60.7
IPR019539	Galactokinase, N-terminal domain	PFAM	PF10509	GalKase_gal_bdg	coord: 29..63 e-value: 1.8E-9 score: 37.0
None	No IPR available	PANTHER	PTHR10457	MEVALONATE KINASE/GALACTOKINASE	coord: 11..136
IPR000705	Galactokinase	PANTHER	PTHR10457:SF6	GALACTOKINASE	coord: 11..136
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 29..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033912.1	Lag0033912.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0046396	D-galacturonate metabolic process
biological_process	GO:0006012	galactose metabolic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004335	galactokinase activity
molecular_function	GO:0047912	galacturonokinase activity