Lag0033805 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033805
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glutamate receptor
Location	chr3: 1977729 .. 1978274 (-)
RNA-Seq Expression	Lag0033805
Synteny	Lag0033805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTTCATTTTGGTTGATTTGGGGTTTGTTGATTTGGGTTGGATTGAGCTTTGCAACCGTAGCTGATGAGGAGGATGGATATCATGAGCCGAAGAATGGAAACAGGACAAGTAGGGCTAAGGTGAATTTGATACATGTAGGGGCAGTGGTTGATGAGCTGACTCCATCCATCGGCGGGGCTGCACAGAGATGCATCAAAATGGCACTGGCGGATTTCTATGCAGTGCATCCCAATTATCGCAACAAATTGGTTGTGCATATCAGAGATTCACAGGACGTGGTTGGCGCAACGTCCGCTGGTGAGTTTTTCCTCTGCCTTGATTTGCTTAATTTTGTTCAGGCTAATGAATTAAATGTGGCTCGTGATCCAGGGAAGAAATCAAAGGATTTTAATTTATATATATATATATATATATATATATATATACTAGTTATTTTATTTGGATCAAAAAACGGACTGAATCAGTCGGATTATGAAGCCGACGCCGACTCTCGTCCAAGAAACCGACGGAGTCAGTCCGTCGGAGGTGATCGACGGTAA

mRNA sequence

ATGAAGGCTTCATTTTGGTTGATTTGGGGTTTGTTGATTTGGGTTGGATTGAGCTTTGCAACCGTAGCTGATGAGGAGGATGGATATCATGAGCCGAAGAATGGAAACAGGACAAGTAGGGCTAAGGTGAATTTGATACATGTAGGGGCAGTGGTTGATGAGCTGACTCCATCCATCGGCGGGGCTGCACAGAGATGCATCAAAATGGCACTGGCGGATTTCTATGCAGTGCATCCCAATTATCGCAACAAATTGGTTGTGCATATCAGAGATTCACAGGACGTGGTTGGCGCAACGTCCGCTGCCGACGCCGACTCTCGTCCAAGAAACCGACGGAGTCAGTCCGTCGGAGGTGATCGACGGTAA

Coding sequence (CDS)

ATGAAGGCTTCATTTTGGTTGATTTGGGGTTTGTTGATTTGGGTTGGATTGAGCTTTGCAACCGTAGCTGATGAGGAGGATGGATATCATGAGCCGAAGAATGGAAACAGGACAAGTAGGGCTAAGGTGAATTTGATACATGTAGGGGCAGTGGTTGATGAGCTGACTCCATCCATCGGCGGGGCTGCACAGAGATGCATCAAAATGGCACTGGCGGATTTCTATGCAGTGCATCCCAATTATCGCAACAAATTGGTTGTGCATATCAGAGATTCACAGGACGTGGTTGGCGCAACGTCCGCTGCCGACGCCGACTCTCGTCCAAGAAACCGACGGAGTCAGTCCGTCGGAGGTGATCGACGGTAA

Protein sequence

MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIGGAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSAADADSRPRNRRSQSVGGDRR

Homology

[Close]

BLAST of Lag0033805 vs. NCBI nr
Match: XP_022971646.1 (glutamate receptor 2.2-like [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIG 60
           +KA FWLIWGLLIWVGLS A   D E+   E  N NRT+   VNLIHVGAVVD+LTPSIG
Sbjct: 9   IKAPFWLIWGLLIWVGLSCAAKIDVEE---EVMNENRTA---VNLIHVGAVVDKLTPSIG 68

Query: 61  GAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSA 102
           GAA++CI+MAL DFYA HP YRN+L++HIRDSQDVV ATSA
Sbjct: 69  GAAEKCIQMALTDFYAAHPYYRNRLIMHIRDSQDVVAATSA 103

[Close]

BLAST of Lag0033805 vs. NCBI nr
Match: KAG6587778.1 (hypothetical protein SDJN03_16343, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIG 60
           +KA FWLIWGLLIWVGLS      + DG  E  N NRT+   VNLIHVGAVVD+LTPSIG
Sbjct: 9   LKAPFWLIWGLLIWVGLSCGA---KIDGEEEVMNENRTT---VNLIHVGAVVDKLTPSIG 68

Query: 61  GAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSAAD 104
           GAA++CI+MAL DFYA HP+YRN+LV+ IRDSQDVV ATSA +
Sbjct: 69  GAAEKCIQMALTDFYAAHPHYRNRLVMKIRDSQDVVAATSAGE 105

[Close]

BLAST of Lag0033805 vs. NCBI nr
Match: KAG7035719.1 (Glutamate receptor 2.2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIG 60
           +KA FWLIWGLLIWVGLS      + DG  E  N NRT+   VNLIHVGAVVD+LTPSIG
Sbjct: 9   LKAPFWLIWGLLIWVGLSCGA---KIDGEEEVMNENRTT---VNLIHVGAVVDKLTPSIG 68

Query: 61  GAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSA 102
           GAA++CI+MAL DFYA HP+YRN+LV+ IRDSQDVV ATSA
Sbjct: 69  GAAEKCIQMALTDFYAAHPHYRNRLVMKIRDSQDVVAATSA 103

[Close]

BLAST of Lag0033805 vs. NCBI nr
Match: XP_022928927.1 (glutamate receptor 2.2-like [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIG 60
           +KA FWLIWGLLIWVGLS      + DG  E  N NRT+   VNLIHVGAVVD+LTPSIG
Sbjct: 9   LKAPFWLIWGLLIWVGLSCGA---KIDGEEEVMNENRTT---VNLIHVGAVVDKLTPSIG 68

Query: 61  GAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSA 102
           GAA++CI+MAL DFYA HP+YRN+LV+ IRDSQDVV ATSA
Sbjct: 69  GAAEKCIQMALTDFYAAHPHYRNRLVMKIRDSQDVVAATSA 103

[Close]

BLAST of Lag0033805 vs. NCBI nr
Match: XP_023530388.1 (glutamate receptor 2.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-29
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKASFWLIWGLLIWVGLSFATVADEEDGYHEPKNGNRTSRAKVNLIHVGAVVDELTPSIG 60
           ++A FWLIWGLLIWVGLS A    + DG  E  N NRT+   VN IHVGAVVD+LTPSIG
Sbjct: 9   LRAPFWLIWGLLIWVGLSCAA---KIDGEEEVMNENRTA---VNFIHVGAVVDKLTPSIG 68

Query: 61  GAAQRCIKMALADFYAVHPNYRNKLVVHIRDSQDVVGATSA 102
           GAA++CI+MAL DFYA HP+YRN+L++ IRDSQDVV ATSA
Sbjct: 69  GAAEKCIQMALTDFYAAHPHYRNRLIMQIRDSQDVVAATSA 103

[Close]

BLAST of Lag0033805 vs. ExPASy Swiss-Prot
Match: Q9SHV1 (Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 31  EPKNGNRTSRAKVNLIHVGAVVDELTPSIGGAAQRCIKMALADFYAVHPNYRNKLVVHIR 90
           E   G    + +VN+     VV ++  S    A  CI M+LADFY+  P ++ +LVV++ 
Sbjct: 20  ESSRGQDNGKTQVNI----GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVG 79

Query: 91  DSQ-DVVGATSAA 103
           DS+ DVVGA +AA
Sbjct: 80  DSKNDVVGAATAA 88

[Close]

BLAST of Lag0033805 vs. ExPASy Swiss-Prot
Match: O81078 (Glutamate receptor 2.9 OS=Arabidopsis thaliana OX=3702 GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-06
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 36  NRTSRAKVNLIHVGAVVDELTPSIGGAAQRCIKMALADFYAVHPNYRNKLVVHIRDS-QD 95
           N+TS  KV       VV +L  +        IKMA++DFYA HPNY  +L +H+RDS +D
Sbjct: 25  NQTSEIKV------GVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMED 84

Query: 96  VVGATSAA 103
            V A++AA
Sbjct: 85  TVQASAAA 86

[Close]

BLAST of Lag0033805 vs. ExPASy Swiss-Prot
Match: Q9C5V5 (Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 42  KVNLIHVGAVVDELTPSIGGAAQRCIKMALADFYAVHPNYRNKLVVHIRDS-QDVVGATS 101
           +++ I VG V+D L  +        I +AL+DFY  HPNYR +L +H+RDS +D V A++
Sbjct: 29  QISEIKVGVVLD-LNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASA 88

Query: 102 AA 103
           AA
Sbjct: 89  AA 89

The following BLAST results are available for this feature:

BLAST of Lag0033805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971646.1	2.4e-30	71.29	glutamate receptor 2.2-like [Cucurbita maxima]	[more]
KAG6587778.1	1.5e-29	68.93	hypothetical protein SDJN03_16343, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035719.1	2.0e-29	70.30	Glutamate receptor 2.2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928927.1	2.0e-29	70.30	glutamate receptor 2.2-like [Cucurbita moschata]	[more]
XP_023530388.1	4.5e-29	68.32	glutamate receptor 2.2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0033805 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHV1	2.5e-06	39.73	Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1	[more]
O81078	4.2e-06	44.12	Glutamate receptor 2.9 OS=Arabidopsis thaliana OX=3702 GN=GLR2.9 PE=2 SV=1	[more]
Q9C5V5	9.4e-06	43.55	Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..121
None	No IPR available	PANTHER	PTHR34836	OS06G0188250 PROTEIN	coord: 35..102
None	No IPR available	PANTHER	PTHR34836:SF1	OS06G0188250 PROTEIN	coord: 35..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033805.1	Lag0033805.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity