Lag0033780 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033780
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	chr3: 1798601 .. 1799062 (-)
RNA-Seq Expression	Lag0033780
Synteny	Lag0033780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATCAAGTCCCTTGCCGTTGTTTGTTTTTTACTCTCTTTCTCCGCCATTGTCTCTGAAGGCCGTGTGGCCAGGAAGGATCTCGGCATTGACCTTGGAGGACTCGGAGTTGGACTCGGAGCTGGAATAGGCTTGGGCTTAGGTGGAAGTGGGTCCGGATCGGGCTCCGGCTCCGGGTCTGGATCCGGATCCGGATCTGGGTCGAGTTCATCTTCTTCTTCATCATCATACTCCTCCAGCTCCGGGTCCGGAGCTGGGTCCGAAGCAGGGTCCTACGCTGGTTCGTACGCAGGGTCTCGGGCAGGCTCAGGTTCGGATAGGAACAGGAATGGAGGTTCGGGGTACGGTTCGGGATACGGCGAAGGTTCAGGCAGAGGAAGCGGCAACGGTGGCGGTGAGGGATATGGGGAAGGCCATGGATACGGCGAGGGACGTGGTTATGGCGGGGGCAACTGA

mRNA sequence

ATGGCTTCAATCAAGTCCCTTGCCGTTGTTTGTTTTTTACTCTCTTTCTCCGCCATTGTCTCTGAAGGCCGTGTGGCCAGGAAGGATCTCGGCATTGACCTTGGAGGACTCGGAGTTGGACTCGGAGCTGGAATAGGCTTGGGCTTAGGTGGAAGTGGGTCCGGATCGGGCTCCGGCTCCGGGTCTGGATCCGGATCCGGATCTGGGTCGAGTTCATCTTCTTCTTCATCATCATACTCCTCCAGCTCCGGGTCCGGAGCTGGGTCCGAAGCAGGGTCCTACGCTGGTTCGTACGCAGGGTCTCGGGCAGGCTCAGGTTCGGATAGGAACAGGAATGGAGGTTCGGGGTACGGTTCGGGATACGGCGAAGGTTCAGGCAGAGGAAGCGGCAACGGTGGCGGTGAGGGATATGGGGAAGGCCATGGATACGGCGAGGGACGTGGTTATGGCGGGGGCAACTGA

Coding sequence (CDS)

ATGGCTTCAATCAAGTCCCTTGCCGTTGTTTGTTTTTTACTCTCTTTCTCCGCCATTGTCTCTGAAGGCCGTGTGGCCAGGAAGGATCTCGGCATTGACCTTGGAGGACTCGGAGTTGGACTCGGAGCTGGAATAGGCTTGGGCTTAGGTGGAAGTGGGTCCGGATCGGGCTCCGGCTCCGGGTCTGGATCCGGATCCGGATCTGGGTCGAGTTCATCTTCTTCTTCATCATCATACTCCTCCAGCTCCGGGTCCGGAGCTGGGTCCGAAGCAGGGTCCTACGCTGGTTCGTACGCAGGGTCTCGGGCAGGCTCAGGTTCGGATAGGAACAGGAATGGAGGTTCGGGGTACGGTTCGGGATACGGCGAAGGTTCAGGCAGAGGAAGCGGCAACGGTGGCGGTGAGGGATATGGGGAAGGCCATGGATACGGCGAGGGACGTGGTTATGGCGGGGGCAACTGA

Protein sequence

MASIKSLAVVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSGSGSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSYAGSYAGSRAGSGSDRNRNGGSGYGSGYGEGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN

Homology

[Close]

BLAST of Lag0033780 vs. NCBI nr
Match: XP_008443813.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40
Identity = 137/154 (88.96%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MASIKSLA-VVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSG 60
           MASIKSLA VVC LLSFS  +SEGRVARKDLGIDLGGLGVGLGAGIGLG+GGSGSGSGSG
Sbjct: 1   MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSYAGSYAGSRAGSGSDRNRNGGSGYGS 120
           SGSGSGSGS SSSSS SS  SSSSGSGAGSEAGSYAGSYAGSRAGSGS  NRNGGSGYGS
Sbjct: 61  SGSGSGSGSSSSSSSYSS--SSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGS 120

Query: 121 GYGEGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 154
           GYG GSGRG  NG GEGYGEGHGYGEG GYGGGN
Sbjct: 121 GYGGGSGRGGSNGNGEGYGEGHGYGEGHGYGGGN 152

[Close]

BLAST of Lag0033780 vs. NCBI nr
Match: XP_023515819.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40
Identity = 136/153 (88.89%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MASIKSLAVVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSGS 60
           MASI SL VVCFLLSFSAIVS+ RVARKDLG+DLGGLGVG+G GIGLGLG  GSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLG--GSGSGSGS 60

Query: 61  GSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSYAGSYAGSRAGSGSDRNRNGGSGYGSG 120
           GSGSGSGSGSSSSSSSSSYSSSSGSG+G  AGS AGSYAGSRAGS S RNRNGGSG GSG
Sbjct: 61  GSGSGSGSGSSSSSSSSSYSSSSGSGSG--AGSEAGSYAGSRAGSASGRNRNGGSGSGSG 120

Query: 121 YGEGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 154
           YG GSGRGSGNGGGEGYGEGHGYGEGRGYGGGN
Sbjct: 121 YGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 149

[Close]

BLAST of Lag0033780 vs. NCBI nr
Match: XP_023515817.1 (cell wall protein IFF6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 138/169 (81.66%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MASIKSLAVVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSGS 60
           MASI SL VVCFLLSFSAIVS+ RVARKDLG+DLGGLGVG+G GIGLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSAIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSY----------------AGSYAGSRAG 120
           GSGSGSGS SSSSSSS S SS SGSGAGSEAGSY                AGSYAGSRAG
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAG 120

Query: 121 SGSDRNRNGGSGYGSGYGEGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 154
           S S RNRNGGSG GSGYG GSGRGSGNGGGEGYGEGHGYGEGRGYGGGN
Sbjct: 121 SASGRNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 169

[Close]

BLAST of Lag0033780 vs. NCBI nr
Match: XP_004146660.2 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_020101 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 9.3e-40
Identity = 138/155 (89.03%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MASIKSLA-VVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSG 60
           MASIKSLA VVC LLSFSAI+SEGRVARKDLGIDLGG+GVGLG GIGLG+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSYAGSYAGSRAGSGSDRNRNGGSGYGS 120
           SGSGSGSGS SSSSS SS  SSSSGSGAGSEAGSYAGSYAGSRAGSGS  NRNGGSGYGS
Sbjct: 61  SGSGSGSGSSSSSSSYSS--SSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGS 120

Query: 121 GYGEGSGRGSG-NGGGEGYGEGHGYGEGRGYGGGN 154
           GYG GSGRG G N  GEGYGEGHGYGEGRGYGGGN
Sbjct: 121 GYGGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGGN 153

[Close]

BLAST of Lag0033780 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-39
Identity = 134/153 (87.58%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MASIKSLAVVCFLLSFSAIVSEGRVARKDLGIDLGGLGVGLGAGIGLGLGGSGSGSGSGS 60
           MASI SL VVCFLLSFS I+S+ RVARKDLG+DLGGLGVG+G GIGLGLG  GSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLG--GSGSGSGS 60

Query: 61  GSGSGSGSGSSSSSSSSSYSSSSGSGAGSEAGSYAGSYAGSRAGSGSDRNRNGGSGYGSG 120
           GSGSGSGSGSSSSSSSSSYSSSSGSG+G  AGS AGSYAGSRAGSGS  NRNGGSG GSG
Sbjct: 61  GSGSGSGSGSSSSSSSSSYSSSSGSGSG--AGSEAGSYAGSRAGSGSGPNRNGGSGSGSG 120

Query: 121 YGEGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 154
           YG GSGRGSGNGGGEGYGEGHGYGEGRGYGGGN
Sbjct: 121 YGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGGN 149

The following BLAST results are available for this feature:

BLAST of Lag0033780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443813.1	1.4e-40	88.96	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]
XP_023515819.1	1.4e-40	88.89	putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo ...	[more]
XP_023515817.1	1.9e-40	81.66	cell wall protein IFF6-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_004146660.2	9.3e-40	89.03	glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypoth...	[more]
XP_022921883.1	1.2e-39	87.58	putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch...	[more]

BLAST of Lag0033780 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..90
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..153
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033780.1	Lag0033780.1	mRNA