Lag0033605 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0033605
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein transport protein Sec61 subunit gamma
Locationchr3: 513360 .. 513705 (+)
RNA-Seq ExpressionLag0033605
SyntenyLag0033605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCAATGGTATGCCTTTCCTTTACCTCCTCCGTTTTTGTGATATATTCCAATCCATTTGAATGAATAGAAAGATTAGGAACTACATTGTATTGTATTCTGTTTTACGAATCTGATGAATATTGCGGCAACGATTTCGACACAGAATTTACTAAGGTGGCCTTCCGTACGGCAACCGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATCTTCATTCCGATTAACAATATCATCGTCGGATCTGGATAG

mRNA sequence

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCAATGAATTTACTAAGGTGGCCTTCCGTACGGCAACCGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATCTTCATTCCGATTAACAATATCATCGTCGGATCTGGATAG

Coding sequence (CDS)

ATGGATGCCATTGATTCAGTCGTCGATCCTCTCAGAGATTTCGCTAAGGATAGCGTTCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCAATGAATTTACTAAGGTGGCCTTCCGTACGGCAACCGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATCTTCATTCCGATTAACAATATCATCGTCGGATCTGGATAG

Protein sequence

MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIPINNIIVGSG
Homology
[Close]
BLAST of Lag0033605 vs. NCBI nr
Match: KAF8036972.1 (hypothetical protein BT93_B0024 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 133.3 bits (334), Expect = 8.2e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1   MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
           MDA+DSVVDPLRDFAKDSVRLVKRCHKPDR EFTKVAFRTA GFVVMGFVGFFVKLIFIP
Sbjct: 72  MDAVDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 131

Query: 61  INNIIVGSG 70
           INNIIVGSG
Sbjct: 132 INNIIVGSG 140

[Close]
BLAST of Lag0033605 vs. NCBI nr
Match: XP_042954211.1 (protein transport protein Sec61 subunit gamma [Carya illinoinensis] >KAG2676234.1 hypothetical protein I3760_12G043100 [Carya illinoinensis] >KAG2676235.1 hypothetical protein I3760_12G043100 [Carya illinoinensis] >KAG6633366.1 hypothetical protein CIPAW_12G043700 [Carya illinoinensis] >KAG6684029.1 hypothetical protein I3842_12G042200 [Carya illinoinensis] >KAG6684030.1 hypothetical protein I3842_12G042200 [Carya illinoinensis])

HSP 1 Score: 133.3 bits (334), Expect = 8.2e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDA+DSVVDPLRDFAKDSVRLVKRCHKPDR EFTKVAFRTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAVDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 70
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

[Close]
BLAST of Lag0033605 vs. NCBI nr
Match: XP_010249036.1 (PREDICTED: protein transport protein Sec61 subunit gamma-like [Nelumbo nucifera] >DAD30546.1 TPA_asm: hypothetical protein HUJ06_009397 [Nelumbo nucifera])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDA+DSVVDPLRDFAKDSVRLVKRCHKPDR EFTKVAFRTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDALDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 70
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

[Close]
BLAST of Lag0033605 vs. NCBI nr
Match: XP_020248575.1 (protein transport protein Sec61 subunit gamma [Asparagus officinalis])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDA+DSVVDPLRDFAKDSVRLVKRCHKPDR EFTKVAFRTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAMDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 70
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

[Close]
BLAST of Lag0033605 vs. NCBI nr
Match: XP_008789708.1 (protein transport protein Sec61 subunit gamma-like [Phoenix dactylifera])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDA+DSVVDPLRDFAKDS+RLVKRCHKPDR EFTKVAFRTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDALDSVVDPLRDFAKDSMRLVKRCHKPDRKEFTKVAFRTAVGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 70
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

[Close]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match: P38385 (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDA+DSVVDPLR+FAKDSVRLVKRCHKPDR EFTKVA RTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 70
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

[Close]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match: P0DI74 (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-29
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDAIDSVVDPLRDFAKDS+RLVKRCHKPDR EFTKVA RTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 69
          INNIIVG+
Sbjct: 61 INNIIVGA 68

[Close]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match: P0DI75 (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-29
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MDAIDSVVDPLRDFAKDS+RLVKRCHKPDR EFTKVA RTA GFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 69
          INNIIVG+
Sbjct: 61 INNIIVGA 68

[Close]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match: Q9SMP2 (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.5e-27
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          M+AIDS +DPLRDFAK SVRLV+RCHKPDR EFTKVA RTA GFVVMGFVGFFVKL+FIP
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 61 INNIIVGS 69
          INNIIVGS
Sbjct: 61 INNIIVGS 68

[Close]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match: Q7Z1B8 (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=213494 GN=SEC61G PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRNEFTKVAFRTATGFVVMGFVGFFVKLIFIP 60
          MD +   ++P R FAKDS+RLVKRC KPDR EF K+A  TA GF +MGF+GFFVKLI IP
Sbjct: 1  MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 69
          INNIIVGS
Sbjct: 61 INNIIVGS 68

The following BLAST results are available for this feature:
BLAST of Lag0033605 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF8036972.18.2e-2895.65hypothetical protein BT93_B0024 [Corymbia citriodora subsp. variegata][more]
XP_042954211.18.2e-2895.65protein transport protein Sec61 subunit gamma [Carya illinoinensis] >KAG2676234.... [more]
XP_010249036.11.1e-2795.65PREDICTED: protein transport protein Sec61 subunit gamma-like [Nelumbo nucifera]... [more]
XP_020248575.11.4e-2795.65protein transport protein Sec61 subunit gamma [Asparagus officinalis][more]
XP_008789708.11.8e-2794.20protein transport protein Sec61 subunit gamma-like [Phoenix dactylifera][more]
BLAST of Lag0033605 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P383852.6e-2992.75Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX... [more]
P0DI747.7e-2992.65Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 ... [more]
P0DI757.7e-2992.65Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9SMP25.5e-2786.76Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 ... [more]
Q7Z1B83.8e-2069.12Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=21349... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023391Protein translocase SecE domain superfamilyGENE3D1.20.5.820Preprotein translocase SecE subunitcoord: 7..68
e-value: 2.5E-30
score: 105.9
IPR023391Protein translocase SecE domain superfamilySUPERFAMILY103456Preprotein translocase SecE subunitcoord: 4..65
IPR008158Protein translocase SEC61 complex, gamma subunitTIGRFAMTIGR00327TIGR00327coord: 8..66
e-value: 4.6E-15
score: 53.1
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitPFAMPF00584SecEcoord: 13..65
e-value: 6.8E-13
score: 48.3
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitPROSITEPS01067SECE_SEC61Gcoord: 14..42
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitHAMAPMF_00422SecEcoord: 9..64
score: 12.48865
NoneNo IPR availablePANTHERPTHR12309SEC61 GAMMA SUBUNITcoord: 1..69
NoneNo IPR availablePANTHERPTHR12309:SF24PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0033605.1Lag0033605.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031204 posttranslational protein targeting to membrane, translocation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006605 protein targeting
biological_process GO:0015031 protein transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0071261 Ssh1 translocon complex
cellular_component GO:0016020 membrane
molecular_function GO:0008320 protein transmembrane transporter activity