Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTTAAGCAGCCTCTTAAGCGCTGCTGAGGACAGGGGTCTTCTAGCAGGTATATCTTTGGGAGACAACAATCCATCTCTCACTCACCTTCTTTTTGCAGATGATATCCTCCTTTTTATACAGGATAATGATGACTATCTGGATAACGCTGAAGGTTATTGGGAAATTGTCAAAATTAACCCAAATGAGTTTTGGGTTTTCAAAATTGACCTACTTTCTAAAAACTTGTTTTTTTAACCCATTTTATATCAAATTAGCTACTTTTTAGTGGGACCCACGATGTGAAAAGTCATTTTTATCCTTCTTCAATTTTCATCCTTCTCCAATTTTCATCCATGGTAGGAATTAAAATTTTCAACCAACCATTTGACCAACAAAGTATTTTTAAAAAATAAAATCAAACACATGAAATCAAACACACGAACCCACTTCAAAATTTTCATATTGTCAACGTTTTTTTGAAGTACAAGAGGATGATTTTACATGTTTTAGATAACAATAAATTTGTATAAGATCATATTTTTACAAAAATCTGGAAAAAAAAAGTGAATCCCGAGAAATCATGAATCCCGACCGAGAAATCATGAATCCCGACCGGGAAATCATGAATCCCGACCGGGATTTCTTGGTCGGGAAACCGACCAAGAAATTTTCCAGAAGTTTTTTTTTTTTTTTTTTTTTTTCGAAAGGTTTCTTCCCCACCACTAAATTATCAAATTCCCAAACTCCTCTTCCCCACTTAAAATCTTCTTCATAAATTTGTTTAAGAAAATCTTCTTTGTAAATTAACCATAAATTTGTTTAAGAAAATCTTCTTTGTAAATTAACCATAAATTTGTTTAAGAAAATCTTTCATAAATTTGTTTAAGAAAATCTTTCATAAAGTTGTTTAACAAAAAAAAAAAAAAAAGAAAAAGAAAAATAATTTATTAAAAAAAAAAAAAAAACCTAAATGGCAGCAAGCTGCCTTTTGTCCCGGTCAACTTCCCGGCCAGGAGCGTGACCGGGACAAAAAACAGTAATTAAGATTTCTTTTTATTTTCTTTTTTTTTTCTTCTCCTTCTACTTTTTTTTTCTTTCGTTTTCTGGGTTTACTGGTTGGACTTTTTTTTTTTTTTTTTTTTAGAAATCAAACTTTTATATATATTTTAGAGTTGTTTTTTATTTTTTTGATGGATGGAGAAGCTTCAATCTATTAGAAATACCCATTTTTTTCAAAATCTTTTGGGAAGAAAAACCCATTTTTTTTCTAAATTGTTTTGAAATAAAAAAAATTTCCAACCAAAATGTATCTTGTTTGAATTCTCTAACAAGGAAGAACGAAGATGTTTGTTGGTTTTTTTCCGGTTCGATTGGCTACGAAAACCCCTCTCCCTCTATGAAAAACTAAATAGAAAAACCCACAAAAATGAAGAGGTGTGGAGTCGGAGCTGCTGGACACGCCGGAGTCGTTGGAGTCGTCGGAGTCGAACGAGAGAGAAAGAACTGTCGGAGCCATTGGAGTCGTCGGAGCTGAGGGAGGAGAAGACGAAGTGAAGACGAAGGGGGTTTGTGTTTTTTGTTTCAATTTTGACCTTTTACCTTCAGGGTTATTGCTGTAAATTCACATTATTGGGTTTTATCAACTAGGTTAAAAAAACATGTTTTTAAGAATGAGGTTATTTTTGAAATCCAAAATCTTAAAAGGGTTAAAACTGACAATTTCCCAAGGTTATTCGAGCTTTTGAGATTGCTTCTGGCCTAAATATTAATCTCTCCAAATCCACCATATCAGGAATCAATGTCTCAAATATCAGACTCCAAGAAGTTGTGGCCAGATGGAACTGCGGCTCAAAGTCTCTTCCAATTACTTACCTAGGAGCCCCCCTCGGTGGAAAGCCCTCTTCTGAAATTTTCTGGTATTCAGTCTCTAAGAAGATTCAGCAGAAGTTAGATAAGTGGAGGTTTTCTTATATTTCAAAGGGAGGGAGAATAACTCTCATCCAATCAGTTCTAAGCAACCTTCCAACATACATGCTGTCGGTTTTCAAAGCCCCTGCTTCGGTGTGCAAAAAGATTGAAAAGGTCATTCGAAACCTCCTATGGGATGGTAATGACACTGCTTCAAACAACCACCTTGTTCGTTGGGACATTGTTGCTGCTCCCATATCCCATGGAGGCATCGGTATTTGGAGAATAAAGGACACCAACGAAGCCCTTCTTACGAAATGGCTTTGGCGCTTTGTTCACGGGAAAGACTCTCTTTGGAGGAGTCTTATTGAATTTAAATATAAAAAAGATCCTTTGGATATGTTCCCTACTGCCTCTAACCATGCTAGTTCTCGCTCCCGTGGAAGGCTATCATCTATTTTAAGGAGCTTTTTATTGCAAATTGTTGGTTTGTTGAGTCCAACAAGTTTACAGTGTACACATTTACTTGATGAAAAAGAAACAGAGTAA
mRNA sequence
ATGGATTATTTAAGCAGCCTCTTAAGCGCTGCTGAGGACAGGGGTCTTCTAGCAGGTATATCTTTGGGAGACAACAATCCATCTCTCACTCACCTTCTTTTTGCAGATGATATCCTCCTTTTTATACAGGATAATGATGACTATCTGGATAACGCTGAAGGTGTGGAGTCGGAGCTGCTGGACACGCCGGAGTCGTTGGAGTCGTCGGAGTCGAACGAGAGAGAAAGAACTGTCGGAGCCATTGGAGTCGTCGGAGCTGAGGGAGGAGAAGACGAAGTGAAGACGAAGGGGGTTATTCGAGCTTTTGAGATTGCTTCTGGCCTAAATATTAATCTCTCCAAATCCACCATATCAGGAATCAATGTCTCAAATATCAGACTCCAAGAAGTTGTGGCCAGATGGAACTGCGGCTCAAAGTCTCTTCCAATTACTTACCTAGGAGCCCCCCTCGGTGGAAAGCCCTCTTCTGAAATTTTCTGGTATTCAGTCTCTAAGAAGATTCAGCAGAAGTTAGATAAGTGGAGGTTTTCTTATATTTCAAAGGGAGGGAGAATAACTCTCATCCAATCAGTTCTAAGCAACCTTCCAACATACATGCTGTCGGTTTTCAAAGCCCCTGCTTCGGTGTGCAAAAAGATTGAAAAGGTCATTCGAAACCTCCTATGGGATGGTAATGACACTGCTTCAAACAACCACCTTGTTCGTTGGGACATTGTTGCTGCTCCCATATCCCATGGAGGCATCGGTATTTGGAGAATAAAGGACACCAACGAAGCCCTTCTTACGAAATGGCTTTGGCGCTTTGTTCACGGGAAAGACTCTCTTTGGAGGAGTCTTATTGAATTTAAATATAAAAAAGATCCTTTGGATATGTTCCCTACTGCCTCTAACCATGCTAGTTCTCGCTCCCGTGGAAGGCTATCATCTATTTTAAGGAGCTTTTTATTGCAAATTGTTGGTTTGTTGAGTCCAACAAGTTTACAGTGTACACATTTACTTGATGAAAAAGAAACAGAGTAA
Coding sequence (CDS)
ATGGATTATTTAAGCAGCCTCTTAAGCGCTGCTGAGGACAGGGGTCTTCTAGCAGGTATATCTTTGGGAGACAACAATCCATCTCTCACTCACCTTCTTTTTGCAGATGATATCCTCCTTTTTATACAGGATAATGATGACTATCTGGATAACGCTGAAGGTGTGGAGTCGGAGCTGCTGGACACGCCGGAGTCGTTGGAGTCGTCGGAGTCGAACGAGAGAGAAAGAACTGTCGGAGCCATTGGAGTCGTCGGAGCTGAGGGAGGAGAAGACGAAGTGAAGACGAAGGGGGTTATTCGAGCTTTTGAGATTGCTTCTGGCCTAAATATTAATCTCTCCAAATCCACCATATCAGGAATCAATGTCTCAAATATCAGACTCCAAGAAGTTGTGGCCAGATGGAACTGCGGCTCAAAGTCTCTTCCAATTACTTACCTAGGAGCCCCCCTCGGTGGAAAGCCCTCTTCTGAAATTTTCTGGTATTCAGTCTCTAAGAAGATTCAGCAGAAGTTAGATAAGTGGAGGTTTTCTTATATTTCAAAGGGAGGGAGAATAACTCTCATCCAATCAGTTCTAAGCAACCTTCCAACATACATGCTGTCGGTTTTCAAAGCCCCTGCTTCGGTGTGCAAAAAGATTGAAAAGGTCATTCGAAACCTCCTATGGGATGGTAATGACACTGCTTCAAACAACCACCTTGTTCGTTGGGACATTGTTGCTGCTCCCATATCCCATGGAGGCATCGGTATTTGGAGAATAAAGGACACCAACGAAGCCCTTCTTACGAAATGGCTTTGGCGCTTTGTTCACGGGAAAGACTCTCTTTGGAGGAGTCTTATTGAATTTAAATATAAAAAAGATCCTTTGGATATGTTCCCTACTGCCTCTAACCATGCTAGTTCTCGCTCCCGTGGAAGGCTATCATCTATTTTAAGGAGCTTTTTATTGCAAATTGTTGGTTTGTTGAGTCCAACAAGTTTACAGTGTACACATTTACTTGATGAAAAAGAAACAGAGTAA
Protein sequence
MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELLDTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGINVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYISKGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVAAPISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHASSRSRGRLSSILRSFLLQIVGLLSPTSLQCTHLLDEKETE
Homology
BLAST of Lag0033311 vs. NCBI nr
Match:
KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 254.6 bits (649), Expect = 1.2e-63
Identity = 130/303 (42.90%), Postives = 180/303 (59.41%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ + + N +LTHLLFADDILLF++D++ + N
Sbjct: 319 MDYISRLLNSVGEK--IKGVKM-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 378
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 379 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 438
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK +++ FW +V +KI +KL W++S +S
Sbjct: 439 NVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEKINKKLASWKYSMLS 498
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 499 KGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 558
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+P GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 559 SPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 575
Query: 301 SRS 304
SRS
Sbjct: 619 SRS 575
BLAST of Lag0033311 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 1.0e-62
Identity = 130/303 (42.90%), Postives = 179/303 (59.08%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 558 MDYISRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 617
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 618 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 677
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK +++ FW +V +KI +KL W++S +S
Sbjct: 678 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEKINKKLASWKYSMLS 737
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 738 KGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 797
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 798 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 814
Query: 301 SRS 304
SRS
Sbjct: 858 SRS 814
BLAST of Lag0033311 vs. NCBI nr
Match:
KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 1.0e-62
Identity = 138/313 (44.09%), Postives = 187/313 (59.74%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDYLS LLS E G + G+S +N +++H+LFADDILLFI+DND +L+N
Sbjct: 495 MDYLSRLLSHLEITGAIKGVSF-SSNCNISHILFADDILLFIEDNDFFLNN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
+ + FE ASGL INL KS + +
Sbjct: 555 ----------------------------------LRMALSLFERASGLKINLLKSALVPM 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NVS IR +E + W S+SLP++YLG PLGG P S +FW +V +KIQ+KL+ W+++ IS
Sbjct: 615 NVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQKKLNNWKYAQIS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGGR+TLI+S LS+LPTY LSVF+AP+ CK IEK RN LW GN+++ HL+ W V
Sbjct: 675 KGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLINWTKVT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFP--TASNH 300
+ GG+GI R+ TN+ALLTKWLWR++ +LWR LI+ KYK ++P SN
Sbjct: 735 KSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKYK----GIYPGDIPSNI 759
Query: 301 ASSRSRGRLSSIL 312
+SS S+ SI+
Sbjct: 795 SSSTSKAPWRSII 759
BLAST of Lag0033311 vs. NCBI nr
Match:
KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 250.4 bits (638), Expect = 2.3e-62
Identity = 130/303 (42.90%), Postives = 178/303 (58.75%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 495 MDYMSRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 555 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK ++ FW +V +KI +KL W++S +S
Sbjct: 615 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 675 KGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 735 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 751
Query: 301 SRS 304
SRS
Sbjct: 795 SRS 751
BLAST of Lag0033311 vs. NCBI nr
Match:
XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])
HSP 1 Score: 248.8 bits (634), Expect = 6.6e-62
Identity = 129/303 (42.57%), Postives = 177/303 (58.42%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 495 MDYMSRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 555 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK ++ FW +V +KI +KL W++S +S
Sbjct: 615 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FK P S CK IEK RN LW HLV W +
Sbjct: 675 KGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 735 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 751
Query: 301 SRS 304
SRS
Sbjct: 795 SRS 751
BLAST of Lag0033311 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 9.3e-19
Identity = 39/122 (31.97%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 163 VSKKIQQKLDKWRFSYISKGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLW 222
+ +++ ++ WR +S GR+TL ++VLS++P + +S P S+ +++++ R LW
Sbjct: 16 ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75
Query: 223 DGNDTASNNHLVRWDIVAAPISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEF 282
HLV+W V +P GG+G+ K N AL++K WR + K+SLW +++
Sbjct: 76 GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135
Query: 283 KY 285
KY
Sbjct: 136 KY 137
BLAST of Lag0033311 vs. ExPASy TrEMBL
Match:
A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)
HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64
Identity = 130/303 (42.90%), Postives = 180/303 (59.41%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ + + N +LTHLLFADDILLF++D++ + N
Sbjct: 319 MDYISRLLNSVGEK--IKGVKM-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 378
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 379 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 438
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK +++ FW +V +KI +KL W++S +S
Sbjct: 439 NVDAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEKINKKLASWKYSMLS 498
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 499 KGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 558
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+P GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 559 SPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 575
Query: 301 SRS 304
SRS
Sbjct: 619 SRS 575
BLAST of Lag0033311 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 4.9e-63
Identity = 130/303 (42.90%), Postives = 179/303 (59.08%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 558 MDYISRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 617
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 618 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 677
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK +++ FW +V +KI +KL W++S +S
Sbjct: 678 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEKINKKLASWKYSMLS 737
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 738 KGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 797
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 798 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 814
Query: 301 SRS 304
SRS
Sbjct: 858 SRS 814
BLAST of Lag0033311 vs. ExPASy TrEMBL
Match:
A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 4.9e-63
Identity = 138/313 (44.09%), Postives = 187/313 (59.74%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDYLS LLS E G + G+S +N +++H+LFADDILLFI+DND +L+N
Sbjct: 495 MDYLSRLLSHLEITGAIKGVSF-SSNCNISHILFADDILLFIEDNDFFLNN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
+ + FE ASGL INL KS + +
Sbjct: 555 ----------------------------------LRMALSLFERASGLKINLLKSALVPM 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NVS IR +E + W S+SLP++YLG PLGG P S +FW +V +KIQ+KL+ W+++ IS
Sbjct: 615 NVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQKKLNNWKYAQIS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGGR+TLI+S LS+LPTY LSVF+AP+ CK IEK RN LW GN+++ HL+ W V
Sbjct: 675 KGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLINWTKVT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFP--TASNH 300
+ GG+GI R+ TN+ALLTKWLWR++ +LWR LI+ KYK ++P SN
Sbjct: 735 KSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKYK----GIYPGDIPSNI 759
Query: 301 ASSRSRGRLSSIL 312
+SS S+ SI+
Sbjct: 795 SSSTSKAPWRSII 759
BLAST of Lag0033311 vs. ExPASy TrEMBL
Match:
A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)
HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 130/303 (42.90%), Postives = 178/303 (58.75%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 495 MDYMSRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 555 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK ++ FW +V +KI +KL W++S +S
Sbjct: 615 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FKAP S CK IEK RN LW HLV W +
Sbjct: 675 KGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 735 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 751
Query: 301 SRS 304
SRS
Sbjct: 795 SRS 751
BLAST of Lag0033311 vs. ExPASy TrEMBL
Match:
A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 129/303 (42.57%), Postives = 177/303 (58.42%), Query Frame = 0
Query: 1 MDYLSSLLSAAEDRGLLAGISLGDNNPSLTHLLFADDILLFIQDNDDYLDNAEGVESELL 60
MDY+S LL++ ++ + G+ L + N +LTHLLFADDILLF++D++ + N
Sbjct: 495 MDYMSRLLNSVGEK--IKGVKL-EGNINLTHLLFADDILLFVEDDEHSIQN--------- 554
Query: 61 DTPESLESSESNERERTVGAIGVVGAEGGEDEVKTKGVIRAFEIASGLNINLSKSTISGI 120
K +I F++ASGL+INL+KSTIS I
Sbjct: 555 ----------------------------------LKNIINLFQLASGLSINLNKSTISPI 614
Query: 121 NVSNIRLQEVVARWNCGSKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYIS 180
NV R +++ ++W +K LPI YLG PLGGK ++ FW +V +KI +KL W++S +S
Sbjct: 615 NVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLS 674
Query: 181 KGGRITLIQSVLSNLPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVA 240
KGG+ITLI+S L++LPTY LS+FK P S CK IEK RN LW HLV W +
Sbjct: 675 KGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKIT 734
Query: 241 APISHGGIGIWRIKDTNEALLTKWLWRFVHGKDSLWRSLIEFKYKKDPLDMFPTASNHAS 300
+ GG+GI R+KDTN ALLTKWLWR++H LW+ +I KY+ P NH+S
Sbjct: 735 SSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSS 751
Query: 301 SRS 304
SRS
Sbjct: 795 SRS 751
BLAST of Lag0033311 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 87.8 bits (216), Expect = 1.8e-17
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 0
Query: 138 SKSLPITYLGAPLGGKPSSEIFWYSVSKKIQQKLDKWRFSYISKGGRITLIQSVLSNLPT 197
S +LP+ YLG PL K + + + +KI+ ++ KW ++S GR+ LI SV+ +L
Sbjct: 20 SGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTN 79
Query: 198 YMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVAAPISHGGIGIWRIKDTN 257
+ +S F+ P++ K+I+ + + LW G + + V W V P GG+GI +K+ N
Sbjct: 80 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139
Query: 258 E---------ALLTKWLWR 268
+ L W+W+
Sbjct: 140 KGSFWSISGNTTLGSWMWK 158
BLAST of Lag0033311 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 68.6 bits (166), Expect = 1.1e-11
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 0
Query: 195 LPTYMLSVFKAPASVCKKIEKVIRNLLWDGNDTASNNHLVRWDIVAAPISHGGIGIWRIK 254
LPTY ++ F P +VCK+I V+ + W A H WD ++ + GGIG I+
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 255 DTNEALLTKWLWRFVHGKDSLWRSLIEFKY--KKDPLD 291
N ALL K +WR + +SL + + +Y K DPL+
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLN 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0041367.1 | 1.2e-63 | 42.90 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK06777.1 | 1.0e-62 | 42.90 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0046762.1 | 1.0e-62 | 44.09 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039770.1 | 2.3e-62 | 42.90 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... | [more] |
XP_016902461.1 | 6.6e-62 | 42.57 | PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 9.3e-19 | 31.97 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TI93 | 5.8e-64 | 42.90 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C4J1 | 4.9e-63 | 42.90 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TTK1 | 4.9e-63 | 44.09 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3DM72 | 1.1e-62 | 42.90 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S4E2K5 | 3.2e-62 | 42.57 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 1.8e-17 | 30.22 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
AT4G29090.1 | 1.1e-11 | 35.71 | Ribonuclease H-like superfamily protein | [more] |