Lag0033017 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0033017
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	tobamovirus multiplication protein 2B
Location	chr11: 39977003 .. 39979009 (+)
RNA-Seq Expression	Lag0033017
Synteny	Lag0033017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAATCGTCTTCCGCTCAGGCATGCTCTCTCTCTCTCTCGTTCTCTCTATCGTTTGTGTTTTCGGAAGCTTTACGAGTTCATTCAAACGGAACTCTTATGAGTAGGTTCGGTAGAGATGTTGCATGACTTGGTTCGATATATGTTTTTTGAAATTTCATTTTTCGTTCTATCTTGCGTGTTCTTTAGGAATGTTGTTGTCGATCTTGAACCACACGAATTGATGATTGAATTGCTAAGCCTTAATCGTTCGTTTTGTATCTTCTCCACGGTATTCTAGCTTCAGTTAATTGTGAAATCACATGATGTTTTGAATAAATTTTGTTATATTGTACAGAAATTTGACCGCGCAAGTAATGTTTACATCGAAGTCATAGTTTCAGTTATTCCTATCTCGTGCAATTGGAGGGGAACTTATCTTTGATTTTTCTCTTCACATTTTGTCGACTCAACTCTAGGAAGTTTTATTCATGTTGCTGAAATGCAAATTTATTTGAGATTTTCTCTTATTGCATTGCTCTCAGTTCAGTTTCCCATAGAGTTCATCTTGTTGCAGGCTCAGTTAATGAAGTTGCCAAAGAACCTTTTGGCAAAAGCACCTACTATGAAAAATACTGGGAAAGTATGTAGAATCAGTTAGTAACCTGAACAAGTTCTTATTTCGTTTATTTATTTTTTAAGGGTTCTTCTGAAAGTACTTTCCTCTCTTCTTGTGATGCAGATCTTAGAGCAGATGCCGCAGGTGGTTTCATCCTTAGATGCGTATGTTGAGAAGGGACTAGAAAGGTTATTTTTTTTCCTTGAACATGCATTGGTGGAATTGATTCTAATTGTATATTCAAACGTACAAAGCATCTAAGGACTAGAAAGCTCATGCGTTACTTCTTTGGTGAAGACTTCGCTAATTTATGATGAAGTGTTTTCTTTTAATTCAACAATATATATTGATGGGAAGTCAACTTAAGCATAGCTCAACTAGTTTAGGCATAAACTCTCGACCAAGTCAGAGGTTTGAATCCTTCAACCCCAATATATATAGTCAGATACAAACCTTTGATTTGGTTGAAGATACAATGCTTTAACAAGTTGAGTTATGCTTTAGTTGACATAATTTTTGATAAGTTGATATTTAATAACAACCAGTGATATGTCATATGTTATAATTATCGTCTTTGAAACTAAACTTAATAGGTTTAGTTGGGATTAAAATGGTCTGAACAAACTTCAGCTTTACCCACCTTTCCTGTTTAAGATTTTTCTGAATATGGTGTGGTTTGGTTTTGAAATGGTTCGCTTTCTTAAATTTAAAAGATTCATTCAAATATAGACCATTCAGAACGCTTATGATACTTCAGTTACTGATGACATTATTTTGCAAGGAATTAATATCAATGACATCCTAAGTTATCCATTAGGCAAATATTTCACAATATTGTATGAATTACAACCTTGCTGTTACTCTTTGGTTTATCAAGTAAACTACTTCTACTCTTTGTCTGACCCTCCCCATGACCAAGTTTTTTATGTTGCATTTTCAGATAAGCTCCTCTTCTAAATATATAATTCTATGTCTACTGATCAGCTTGTCTTCTGTCTTGGTTTACTTGATTCCGAATGTTTGCAGCATTCCTCATTTGCAGACTGTCGTGCAATTACTGACAAACATGGAAAACTCTCAGCTGAAATCTCTCTCTCAAATCCAACACCCTCAAGAGGTTCAACTCCTCTCCCTTTCGAGAAATTATTCAAGAGGCCGCCACCATTAGATGTATGAGAGAAATTATTAAAGTACATCGATTTTGTATCTCATGGTTATTCAGAGCAGACAAATTTTAAGATCTACATCCAACGGTTAATGTGGCTGCCTCATTGAATAATTTGTCTCTCTCTCGCCCTTTTTACCCATCAAAGGTCTATCTTGTTATATAGCAGTTTGTTAACTCAGTTTCTTATGTTTAACTGTTTCTCTTCCAGGAAAGCGAGTCTCTTCCTCAACTGGACTAA

mRNA sequence

ATGCAGCAATCGTCTTCCGCTCAGGCATGCTCTCTCTCTCTCTCGTTCTCTCTATCGTTTGTGTTTTCGGAAGCTTTACGAGTTCATTCAAACGGAACTCTTATGAGTAGGAATGTTGTTGTCGATCTTGAACCACACGAATTGATGATTGAATTGCTAAGCCTTAATCGTTCGTTTTGTATCTTCTCCACGGCTCAGTTAATGAAGTTGCCAAAGAACCTTTTGGCAAAAGCACCTACTATGAAAAATACTGGGAAAATCTTAGAGCAGATGCCGCAGGTGGTTTCATCCTTAGATGCGTATGTTGAGAAGGGACTAGAAAGCATTCCTCATTTGCAGACTGTCGTGCAATTACTGACAAACATGGAAAACTCTCAGCTGAAATCTCTCTCTCAAATCCAACACCCTCAAGAGGAAAGCGAGTCTCTTCCTCAACTGGACTAA

Coding sequence (CDS)

ATGCAGCAATCGTCTTCCGCTCAGGCATGCTCTCTCTCTCTCTCGTTCTCTCTATCGTTTGTGTTTTCGGAAGCTTTACGAGTTCATTCAAACGGAACTCTTATGAGTAGGAATGTTGTTGTCGATCTTGAACCACACGAATTGATGATTGAATTGCTAAGCCTTAATCGTTCGTTTTGTATCTTCTCCACGGCTCAGTTAATGAAGTTGCCAAAGAACCTTTTGGCAAAAGCACCTACTATGAAAAATACTGGGAAAATCTTAGAGCAGATGCCGCAGGTGGTTTCATCCTTAGATGCGTATGTTGAGAAGGGACTAGAAAGCATTCCTCATTTGCAGACTGTCGTGCAATTACTGACAAACATGGAAAACTCTCAGCTGAAATCTCTCTCTCAAATCCAACACCCTCAAGAGGAAAGCGAGTCTCTTCCTCAACTGGACTAA

Protein sequence

MQQSSSAQACSLSLSFSLSFVFSEALRVHSNGTLMSRNVVVDLEPHELMIELLSLNRSFCIFSTAQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMENSQLKSLSQIQHPQEESESLPQLD

Homology

[Close]

BLAST of Lag0033017 vs. NCBI nr
Match: KAG7011526.1 (Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.9 bits (450), Expect = 6.2e-41
Identity = 112/152 (73.68%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MQQSSSAQAC------SLSLSFSLSFVFSEALRVHSNGTLMSRNVVVDLEPHELMIELLS 60
           MQQSSSAQAC      SLSLS SLSFVFSEALRVHSNGTL SR V   L   +L +    
Sbjct: 38  MQQSSSAQACSLSLSLSLSLSLSLSFVFSEALRVHSNGTLRSRIVSYVLRCFQLSLSY-- 97

Query: 61  LNRSFCIFSTAQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQT 120
              S C+   AQL KLPKNLLAKA T+KNT KILEQMPQVVSSLDAYVEKGLESIPHLQT
Sbjct: 98  --SSSCL--QAQLAKLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQT 157

Query: 121 VVQLLTNMENSQLKSLSQIQHPQEESESLPQL 147
           VVQLLTNME++QLKSLSQIQHP+EE ES+ QL
Sbjct: 158 VVQLLTNMESTQLKSLSQIQHPKEEIESVHQL 183

[Close]

BLAST of Lag0033017 vs. NCBI nr
Match: KAE8651454.1 (hypothetical protein Csa_002258, partial [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 65  AQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMEN 124
           AQL KLPKNLLAKA TMKNTGKILEQMPQVVSSLDAYVEKGLESIP LQTVVQLLTNME+
Sbjct: 66  AQLTKLPKNLLAKASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMES 125

Query: 125 SQLKSLSQIQHPQEESESLPQ 146
           SQLKSLSQ QHPQEESESLPQ
Sbjct: 126 SQLKSLSQFQHPQEESESLPQ 146

[Close]

BLAST of Lag0033017 vs. NCBI nr
Match: XP_011652663.2 (tobamovirus multiplication protein 2B [Cucumis sativus] >XP_031735982.1 tobamovirus multiplication protein 2B [Cucumis sativus] >XP_031739026.1 tobamovirus multiplication protein 2B-like [Cucumis sativus] >XP_031739027.1 tobamovirus multiplication protein 2B-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 65  AQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMEN 124
           AQL KLPKNLLAKA TMKNTGKILEQMPQVVSSLDAYVEKGLESIP LQTVVQLLTNME+
Sbjct: 61  AQLTKLPKNLLAKASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMES 120

Query: 125 SQLKSLSQIQHPQEESESLPQ 146
           SQLKSLSQ QHPQEESESLPQ
Sbjct: 121 SQLKSLSQFQHPQEESESLPQ 141

[Close]

BLAST of Lag0033017 vs. NCBI nr
Match: KGN65080.2 (hypothetical protein Csa_013017, partial [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 65  AQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMEN 124
           AQL KLPKNLLAKA TMKNTGKILEQMPQVVSSLDAYVEKGLESIP LQTVVQLLTNME+
Sbjct: 65  AQLTKLPKNLLAKASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMES 124

Query: 125 SQLKSLSQIQHPQEESESLPQ 146
           SQLKSLSQ QHPQEESESLPQ
Sbjct: 125 SQLKSLSQFQHPQEESESLPQ 145

[Close]

BLAST of Lag0033017 vs. NCBI nr
Match: KAA0038537.1 (peroxidase 20 isoform X1 [Cucumis melo var. makuwa] >TYK31134.1 peroxidase 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 63  STAQLMKLPKNLLAKAPTMKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNM 122
           S AQL KLPKNLLAKA TM+NTGKILEQMPQVVSSLDAYVEKGLESIP LQTVVQLLTNM
Sbjct: 353 SLAQLRKLPKNLLAKASTMRNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNM 412

Query: 123 ENSQLKSLSQIQHPQEESESLPQ 146
           E+SQLKSLSQ QHPQEESESL Q
Sbjct: 413 ESSQLKSLSQFQHPQEESESLHQ 435

[Close]

BLAST of Lag0033017 vs. ExPASy Swiss-Prot
Match: Q8H960 (Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B PE=2 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-15
Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 23  SEALRVHSNGTLMSRNVVVD--LEPHELMIELLSLNRSFCIFSTAQLMKLPKNLLAKAPT 82
           SE  R  S G   ++ VV D   +       LL L R     S AQL KLPKNLLAKA  
Sbjct: 5   SENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQ-SSSSQAQLAKLPKNLLAKASL 64

Query: 83  MKNTGKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMENSQLKSLSQ 133
            K TG+ L Q+PQV+SSLDA++E GL S  HL TV QLL NME++QL++L Q
Sbjct: 65  TKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

The following BLAST results are available for this feature:

BLAST of Lag0033017 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011526.1	6.2e-41	73.68	Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAE8651454.1	1.1e-29	93.83	hypothetical protein Csa_002258, partial [Cucumis sativus]	[more]
XP_011652663.2	1.1e-29	93.83	tobamovirus multiplication protein 2B [Cucumis sativus] >XP_031735982.1 tobamovi...	[more]
KGN65080.2	1.1e-29	93.83	hypothetical protein Csa_013017, partial [Cucumis sativus]	[more]
KAA0038537.1	1.2e-28	90.36	peroxidase 20 isoform X1 [Cucumis melo var. makuwa] >TYK31134.1 peroxidase 20 is...	[more]

BLAST of Lag0033017 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H960	3.5e-15	50.89	Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B P...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0033017.1	Lag0033017.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006979	response to oxidative stress
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004601	peroxidase activity