Lag0032754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	remorin-like
Location	chr11: 37155802 .. 37156576 (+)
RNA-Seq Expression	Lag0032754
Synteny	Lag0032754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGGTTTCAGGTCCTGCTGAGAAAGTTGATGCTTCAAAGGACAGAGGTAAAATTCACCATTTTCTTTTTGGTTTTCTTGACAATATATAATCTACAATGTCACAAACATTTCCAAAATTTTGGGCGCTAAGATTTCGAGAGTGTTTTGTAAAAGTAGAAAACAAAACGAAGAAATTGTTATGAAACGGGATTTAAGATATTGTTTTTCGAGTTTTGCTTTCTTAGATATTGCGTTGGCTCGAGTCGAATGGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAAAACAAGTAAAATTTAGAAATCTCTCCATTGTTGAATTCTATCTGGTTTTGAGTTTTTTAACATGTTGGAAATCTTTGGAACAGGGCATACAAAAGGCTCTCTGCTATTGACTCTTGGGAGAATAGCAGAAAAGCTTCCATAGAAGCACAGCTGATGAAGCTAGAGGTAAATTTTGCTTTTGCTGAAGTACATTTTCACACTGTTACAACTCTGGCTTTTCGATATAAGTTTTGAAGCGCTCGGTTTTTGTGAAACGAAAGGAAAAAATGGAGAAGAAGAAAGCAGAGTACGCCGAGCAGATGAAGAACAAAATTGTTGGAATTCACAAGCAAGGAGAAGAGAAGAAAGCAACCATTGAGGCAGAGCGGAGAGAACAGTGCCTCAAGGTCGAGGAAACCGCAACAAAGTATCGAGCTTCGGGGTTCACCCCGAAGACTCTACTCAAATGCTTCAGTGGTTGA

mRNA sequence

ATGACAGAGGTTTCAGGTCCTGCTGAGAAAGTTGATGCTTCAAAGGACAGAGATATTGCGTTGGCTCGAGTCGAATGGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAAAACAAGGCATACAAAAGGCTCTCTGCTATTGACTCTTGGGAGAATAGCAGAAAAGCTTCCATAGAAGCACAGCTGATGAAGCTAGAGGAAAAAATGGAGAAGAAGAAAGCAGAGTACGCCGAGCAGATGAAGAACAAAATTGTTGGAATTCACAAGCAAGGAGAAGAGAAGAAAGCAACCATTGAGGCAGAGCGGAGAGAACAGTGCCTCAAGGTCGAGGAAACCGCAACAAAGTATCGAGCTTCGGGGTTCACCCCGAAGACTCTACTCAAATGCTTCAGTGGTTGA

Coding sequence (CDS)

ATGACAGAGGTTTCAGGTCCTGCTGAGAAAGTTGATGCTTCAAAGGACAGAGATATTGCGTTGGCTCGAGTCGAATGGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAAAACAAGGCATACAAAAGGCTCTCTGCTATTGACTCTTGGGAGAATAGCAGAAAAGCTTCCATAGAAGCACAGCTGATGAAGCTAGAGGAAAAAATGGAGAAGAAGAAAGCAGAGTACGCCGAGCAGATGAAGAACAAAATTGTTGGAATTCACAAGCAAGGAGAAGAGAAGAAAGCAACCATTGAGGCAGAGCGGAGAGAACAGTGCCTCAAGGTCGAGGAAACCGCAACAAAGTATCGAGCTTCGGGGTTCACCCCGAAGACTCTACTCAAATGCTTCAGTGGTTGA

Protein sequence

MTEVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETATKYRASGFTPKTLLKCFSG

Homology

[Close]

BLAST of Lag0032754 vs. NCBI nr
Match: XP_008437238.1 (PREDICTED: uncharacterized protein At3g61260 isoform X2 [Cucumis melo] >KAA0042778.1 remorin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.3e-60
Identity = 126/140 (90.00%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MTEVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWEN 60
           MTE+S  AEKVDA+KDRDIALARVEWEKK+ALIKAWEESEKIKAENKAYKRLSA++SWEN
Sbjct: 1   MTEISDSAEKVDAAKDRDIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSAVESWEN 60

Query: 61  SRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEET 120
           +RKASIEAQLMK+EEKMEKKKAEYAEQMKNKIVGIHK+GEEKKATIEAER+EQCLKVEET
Sbjct: 61  TRKASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQCLKVEET 120

Query: 121 ATKYRASGFTPKTLLKCFSG 141
           A KYR SGF PKTLLKCFSG
Sbjct: 121 AEKYRTSGFIPKTLLKCFSG 140

[Close]

BLAST of Lag0032754 vs. NCBI nr
Match: XP_038876135.1 (remorin 1.4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 6.3e-59
Identity = 123/140 (87.86%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MTEVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWEN 60
           MTE+S PAEK D +KDRDIALARVEWEKK+ALIKAWEESEKIKAENKAYKRLSA++SWEN
Sbjct: 41  MTEISDPAEKSDIAKDRDIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSAVESWEN 100

Query: 61  SRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEET 120
           ++KASIEAQLMK+EEKMEKKKAEYAEQMKNKIVGIHK+GEEKKATIEAER+EQCLKVEE 
Sbjct: 101 TKKASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQCLKVEEA 160

Query: 121 ATKYRASGFTPKTLLKCFSG 141
           A KYR SGF PKTLLKCFSG
Sbjct: 161 AAKYRTSGFIPKTLLKCFSG 180

[Close]

BLAST of Lag0032754 vs. NCBI nr
Match: XP_038876137.1 (remorin 1.4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 6.3e-59
Identity = 123/140 (87.86%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MTEVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWEN 60
           MTE+S PAEK D +KDRDIALARVEWEKK+ALIKAWEESEKIKAENKAYKRLSA++SWEN
Sbjct: 33  MTEISDPAEKSDIAKDRDIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSAVESWEN 92

Query: 61  SRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEET 120
           ++KASIEAQLMK+EEKMEKKKAEYAEQMKNKIVGIHK+GEEKKATIEAER+EQCLKVEE 
Sbjct: 93  TKKASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQCLKVEEA 152

Query: 121 ATKYRASGFTPKTLLKCFSG 141
           A KYR SGF PKTLLKCFSG
Sbjct: 153 AAKYRTSGFIPKTLLKCFSG 172

[Close]

BLAST of Lag0032754 vs. NCBI nr
Match: XP_008437236.1 (PREDICTED: remorin isoform X1 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58
Identity = 123/138 (89.13%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   EVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSR 62
           ++S  AEKVDA+KDRDIALARVEWEKK+ALIKAWEESEKIKAENKAYKRLSA++SWEN+R
Sbjct: 86  KISDSAEKVDAAKDRDIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSAVESWENTR 145

Query: 63  KASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAT 122
           KASIEAQLMK+EEKMEKKKAEYAEQMKNKIVGIHK+GEEKKATIEAER+EQCLKVEETA 
Sbjct: 146 KASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQCLKVEETAE 205

Query: 123 KYRASGFTPKTLLKCFSG 141
           KYR SGF PKTLLKCFSG
Sbjct: 206 KYRTSGFIPKTLLKCFSG 223

[Close]

BLAST of Lag0032754 vs. NCBI nr
Match: XP_038876139.1 (remorin 1.4-like isoform X4 [Benincasa hispida])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 3   EVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSR 62
           ++S PAEK D +KDRDIALARVEWEKK+ALIKAWEESEKIKAENKAYKRLSA++SWEN++
Sbjct: 21  QISDPAEKSDIAKDRDIALARVEWEKKMALIKAWEESEKIKAENKAYKRLSAVESWENTK 80

Query: 63  KASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAT 122
           KASIEAQLMK+EEKMEKKKAEYAEQMKNKIVGIHK+GEEKKATIEAER+EQCLKVEE A 
Sbjct: 81  KASIEAQLMKIEEKMEKKKAEYAEQMKNKIVGIHKEGEEKKATIEAERKEQCLKVEEAAA 140

Query: 123 KYRASGFTPKTLLKCFSG 141
           KYR SGF PKTLLKCFSG
Sbjct: 141 KYRTSGFIPKTLLKCFSG 158

[Close]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 9   EKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSRKASIEA 68
           EK + S +RD  LARVE EK+++LIKAWEE+EK K ENKA K+LS+I SWEN++KA++EA
Sbjct: 73  EKKEGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEA 132

Query: 69  QLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETATKYRASG 128
           +L K+EE++EKKKAEY EQMKNKI  IHK+ EEK+A IEA+R E+ LK EE A KYRA+G
Sbjct: 133 ELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATG 192

Query: 129 FTPKTLLKC 138
             PK L  C
Sbjct: 193 TAPKKLFGC 201

[Close]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-36
Identity = 79/136 (58.09%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 3   EVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSR 62
           E   PA+   AS DRD+ LA +  EK+L+ ++AWEESEK KAENKA K+++ + +WENS+
Sbjct: 77  EEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSK 136

Query: 63  KASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETAT 122
           KA++EAQL K+EE++EKKKAEYAE+MKNK+  IHK+ EE++A IEA+R E  LK EETA 
Sbjct: 137 KAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAA 196

Query: 123 KYRASGFTPKTLLKCF 139
           KYRA+G  PK    CF
Sbjct: 197 KYRATGIVPKATCGCF 212

[Close]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.7e-36
Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 2   TEVSGPA-EKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWEN 61
           T+   PA EK + S DRD  LARV  EK+++LIKAWEESEK KAENKA K++SAI +WEN
Sbjct: 61  TKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWEN 120

Query: 62  SRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEET 121
           S+KA++EA+L K+EE++EKKKAEY E+MKNKI  +HK+ EEK+A IEA+R E  LK EE 
Sbjct: 121 SKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEEL 180

Query: 122 ATKYRASGFTPKTLLKCF 139
           A KYRA+G  PK +L  F
Sbjct: 181 AAKYRATGTAPKKILGIF 198

[Close]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.5e-34
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 7   PAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSRKASI 66
           P +    S DRD+ LA +E EKK + IKAWEESEK KAEN+A K++S + +WENS+KA++
Sbjct: 59  PKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAV 118

Query: 67  EAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETATKYRA 126
           EAQL K+EEK+EKKKA+Y E+MKNK+  IHK  EEK+A +EA++ E+ LK EE   KYRA
Sbjct: 119 EAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRA 178

Query: 127 SGFTPKTLLKCF 139
           +G  PK    CF
Sbjct: 179 TGVVPKATCGCF 190

[Close]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot
Match: P93758 (Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 23  RVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSRKASIEAQLMKLEEKMEKKKA 82
           RV+ E+  A I AW+ ++  K  N+  +  + I+ W N +     + + K+E K+E++KA
Sbjct: 157 RVKREEVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKA 216

Query: 83  EYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETATKYRASGFTP 132
           +  E+ +N +    ++ EE++AT EA+R  +  KV E A   RA G  P
Sbjct: 217 KAMEKTQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPP 265

The following BLAST results are available for this feature:

BLAST of Lag0032754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437238.1	4.3e-60	90.00	PREDICTED: uncharacterized protein At3g61260 isoform X2 [Cucumis melo] >KAA00427...	[more]
XP_038876135.1	6.3e-59	87.86	remorin 1.4-like isoform X1 [Benincasa hispida]	[more]
XP_038876137.1	6.3e-59	87.86	remorin 1.4-like isoform X2 [Benincasa hispida]	[more]
XP_008437236.1	1.8e-58	89.13	PREDICTED: remorin isoform X1 [Cucumis melo]	[more]
XP_038876139.1	2.0e-57	86.96	remorin 1.4-like isoform X4 [Benincasa hispida]	[more]

BLAST of Lag0032754 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA5	1.2e-36	63.57	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
Q9M2D8	2.0e-36	58.09	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
P93788	7.7e-36	61.59	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
O80837	5.5e-34	56.82	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]
P93758	2.2e-06	32.11	Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..90
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 7..139
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN 1.4	coord: 7..139
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 28..132 e-value: 1.1E-28 score: 99.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032754.1	Lag0032754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress
cellular_component	GO:0016021	integral component of membrane