Lag0032510 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032510
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr11: 33781980 .. 33782363 (-)
RNA-Seq Expression	Lag0032510
Synteny	Lag0032510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCTGGAGGCAAGAAGATGGTTAGGAAATGGTCAATCAAAAGCCTCGAAGGTTTTGCTATGCTCGAGGGGCTAAAAGCTTTCCAGAGGATGATCGTCAACCTTGCCGATAGGGGCGATGGAATTCCGCTCGAAGTAGAATCTGATGCTTCGGAGCTTGTTAAATGCATCCAGGGAACATCTTCGGATCTCTCTGAGACGGGCCTGATCATGAGAGAGTTGAAAGATTTCACTGCGGGATCGAACATCTCTTTCGCCTTTTGTCCTAGGAGCAACAATGTTCTTGCTCATTCGTTAGCGCGCTTGGCTGTAGAGCGGAGTAATTTCGTTTTTTTGGAGCCCTCTGGTTTGTTCGATGGGGTTTTTTTTGGTAAGGGATGA

mRNA sequence

ATGGGTGCTGGAGGCAAGAAGATGGTTAGGAAATGGTCAATCAAAAGCCTCGAAGGTTTTGCTATGCTCGAGGGGCTAAAAGCTTTCCAGAGGATGATCGTCAACCTTGCCGATAGGGGCGATGGAATTCCGCTCGAAGTAGAATCTGATGCTTCGGAGCTTGTTAAATGCATCCAGGGAACATCTTCGGATCTCTCTGAGACGGGCCTGATCATGAGAGAGTTGAAAGATTTCACTGCGGGATCGAACATCTCTTTCGCCTTTTGTCCTAGGAGCAACAATGTTCTTGCTCATTCGTTAGCGCGCTTGGCTGTAGAGCGGAGTAATTTCGTTTTTTTGGAGCCCTCTGGTTTGTTCGATGGGGTTTTTTTTGGTAAGGGATGA

Coding sequence (CDS)

ATGGGTGCTGGAGGCAAGAAGATGGTTAGGAAATGGTCAATCAAAAGCCTCGAAGGTTTTGCTATGCTCGAGGGGCTAAAAGCTTTCCAGAGGATGATCGTCAACCTTGCCGATAGGGGCGATGGAATTCCGCTCGAAGTAGAATCTGATGCTTCGGAGCTTGTTAAATGCATCCAGGGAACATCTTCGGATCTCTCTGAGACGGGCCTGATCATGAGAGAGTTGAAAGATTTCACTGCGGGATCGAACATCTCTTTCGCCTTTTGTCCTAGGAGCAACAATGTTCTTGCTCATTCGTTAGCGCGCTTGGCTGTAGAGCGGAGTAATTTCGTTTTTTTGGAGCCCTCTGGTTTGTTCGATGGGGTTTTTTTTGGTAAGGGATGA

Protein sequence

MGAGGKKMVRKWSIKSLEGFAMLEGLKAFQRMIVNLADRGDGIPLEVESDASELVKCIQGTSSDLSETGLIMRELKDFTAGSNISFAFCPRSNNVLAHSLARLAVERSNFVFLEPSGLFDGVFFGKG

Homology

[Close]

BLAST of Lag0032510 vs. NCBI nr
Match: KAF7008908.1 (hypothetical protein CFC21_023557 [Triticum aestivum])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-04
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 45  LEVESDASELVKCIQGTSSDLSETGLIMRELKDFTA--GSNISFAFCPRSNNVLAHSLA 102
           ++VE D   LVK ++GT +DL+  GL+ RE++ F      N+SF+F PR+ N LAH+LA
Sbjct: 4   IQVEMDCQVLVKALKGTEADLAPEGLLFREIRHFARLNFGNVSFSFAPRACNKLAHALA 62

[Close]

BLAST of Lag0032510 vs. NCBI nr
Match: KAF8650267.1 (hypothetical protein HU200_064026 [Digitaria exilis])

HSP 1 Score: 55.1 bits (131), Expect = 5.2e-04
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 21  AMLEGLKAFQRMIVNLADRGDGIPLEVESDASELVKCIQGTSSDLSETGLIMRELKDFTA 80
           A+   + A  R +   +D+G    +EVESD + LV  +  +S DLS  G++ +E + F +
Sbjct: 130 ALCAEMHACLRALEACSDQGMA-RVEVESDCAVLVSALSSSSYDLSTAGVLFQEARLFIS 189

Query: 81  --GSNISFAFCPRSNNVLAHSLARLAVER---SNFVFLEP 116
               ++ F FCPRS+N  AH LAR  + R    + V+L+P
Sbjct: 190 LNFESVVFKFCPRSSNGCAHELARYGLSRDPDQDCVWLDP 228

[Close]

BLAST of Lag0032510 vs. NCBI nr
Match: XP_015387358.1 (uncharacterized protein LOC107177672 [Citrus sinensis])

HSP 1 Score: 54.3 bits (129), Expect = 8.9e-04
Identity = 33/112 (29.46%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 1   MGAGGKKMVRKWSIKSLEGFAMLEGLKAFQRMIVNLADRGDGIPLEVESDASELVKCIQG 60
           + A  KK+  + ++ S+E  A+L G++  Q++        + +P+ +ESD++E+V+ +  
Sbjct: 262 IAAAVKKVCFQGTVASMEAEAVLFGIQVAQQV--------EYLPMIIESDSTEVVELVWS 321

Query: 61  TSSDLSETGLIMRELKDFTAGSNI-SFAFCPRSNNVLAHSLARLAVERSNFV 112
             S L+E    + E+K     SN  S  + PR  NV+AH++A++A++  N V
Sbjct: 322 RKSSLTEVSWTVEEIKQQLQISNASSLQYVPRKCNVIAHAIAKVALDFENSV 365

The following BLAST results are available for this feature:

BLAST of Lag0032510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7008908.1	4.0e-04	45.76	hypothetical protein CFC21_023557 [Triticum aestivum]	[more]
KAF8650267.1	5.2e-04	35.00	hypothetical protein HU200_064026 [Digitaria exilis]	[more]
XP_015387358.1	8.9e-04	29.46	uncharacterized protein LOC107177672 [Citrus sinensis]	[more]

BLAST of Lag0032510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 3..104 e-value: 1.8E-7 score: 31.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..110 e-value: 1.9E-5 score: 26.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032510.1	Lag0032510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity