Lag0032492 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032492
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glycine--tRNA ligase beta subunit
Location	chr11: 33485634 .. 33488610 (+)
RNA-Seq Expression	Lag0032492
Synteny	Lag0032492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAACCAGGGTCGCCCACGTGGAAATGGTAGCCGCACATTGATTGTTTCAATAATTCCATTCCACATTACACTGCCGCCGTGGCATTGGCCTCCCATTATTTCTTTTAATAATCCCCAATTCCAATCCTAACTTTTTATTTATTTATCTATTATTATTGTTGATGCTCAAATTTGATCGGGTAGAACTCACCTAACCTTCACGTGCCACCAACATTAAATTTGTATGGGAAGACATGACCTGCAAGACAGTAAATTTGCACACCTGTGTGGTGCTTGTCACACCGCGCTCCAATGCTTTAGTCAAAAAACGGAAATATGGGAGCAAGAGGAAAGAGTAAAGAGTAAAGAGTAGAATTTGGGATCCCTTCTTCAGTGACAAAGAGGGATTTAAAATACCTGCTCATGCTCCTAGAGTTGTTAGGAATTCGAAGGCGTTTCGGGAAGAACTAGGCGGAACCGGGACGGCCAGAGGTTGCAGGGACCGAACGGAAGCGAACGAGCTAGGCCTGCGCAAGCGGGCCGAATGGTCGGCCGAGGCCGACCATAGCCCGACCCTTTGGTCTGATCTTCTTTGGGTCGGTTTTCTGGTCCTATCTCTGTCCGGTTGTACTCCTCAACTCCTTGTGCAGTAGAGTGATCCAAAATTACCTATAACAATTATCTTAGCCCGACCCTTTGGTCTGATCTTCTTTTGGGTCGGTTTTTTGGTCCTATCTCTGTCCGGTTGTACTCCTCAACTCCTTGTGCAGTAGAGTGATCCAAAATTACCTATAACAATTATTATTTTTATAATACTTCTCCAAAATATATATATATATATATATATATTTATTTGAGGTATTCAAAAATATGATGACTCAAAAAAATCTGGTCAACTCAACTCAATCCCATGTAATTTTGGGTCGCATTATGTTCAAATAAAACAAAATTTTTTGTAGATTGAGTTGGTTCCATTTTCGAGCTCACTGAAAATTAGTTTGGGTTAAACTCAGCCGCTCAACTTATAATTCATTTTGAAGAATATTTCTTTTACTTATCAGAAATTTTAGGTGTGAATATTTTTATTTTTTTTAATTTTATTTCTTTCAATATATTTTTTTTTAAATTTGTTTACTAACATTATTAAAATAGTTGTTTAAGTGTTGAGTTTATTTTTTTTTATTAAATTTCTGGAAAAAAAAAATCACCAAAACAGAGGATTGATTGTTACTTGGTAATGATTTAGTATTTTTATTCATTTATAAACTTATTATTGTGTTCCTAATCTATTTATTAATCTACGTTTATAAGAAACTTCATTTAACATTAACAATAATTTTTGTAATTGAATCTAAATCGATGCAAAATTTAAACTACGAAGACTAAATAATTACAGGTTCGAAAGTGTAAGGACAGAAACATTACAAAATAAAATTCAATGATTAAAATGATTACTTCAATGAAAATATGAAGATTAAAAAAAAAAATTGTAGTACAAATTAGAATTGAAATTTTAATTCAATATGTGGGAAAGCAAGTAAATAGATTTTTGAAATCAACATTTTCTAAAACATAATTTTGAATAATAACCATTCCAAAAATTTCATCCTTGAGTTGAGTTAGATTCATTATATTATTTATGGGAGAATTTCTTTGTTGGTCCTTGGGTTTTTAAAATAGACATTTTTAGTCTCTAGATTTTGAGAAATAGGTTTAAAAGGTCCCTAAGTTTTCAAAACCAACATTTTTAGTCCTTGAGTTTTGAGAATTAGGTTTAAAAGTCGTCATATTATTTTTACAACTTTTTAAACTAATATTTTTTTATTATCTTTTAATATTTAATGGTTTTTTAAATTAAAAAAATTTTAAAAAATAATATGATGGACCTTTTAAACCTATTTTTCAAAACTCAGGGACTAAAAAGGTATATATTGAAAACTTATGCCCTGTTTGATAACTATTTGGTTTTTTGTTTTTAAGCTTATAAACAACACTTTCAACCCTAAGTTTCTTTGATTTTTCTCTCACCTTCTCCCCATGTTTTCAAAAACCAAGCCAATTTTTGAAAACTAAAAAAAAAATAGTTTTCAAAAACTTGTTTTTGTTTTTAAAATTTGGTTAGGAATTCAAGTGTGCCTTTAACAAAAATGAAAACCATGGTGATGAAATTTAAAGAAAAAAGCCTAATTTTCAAATACCAAAAACCAAATGGTTATCAAACGGAGCCTTAGGGATAAACCTATTTTTCAAAACTTAGGGACGAAAAAGATTTATTTTGAAAACTCAGGAACCAAATACAAATATTCTCCAAAACTTAGGAACTAAAAAGATATTTCTCCCATTATTTATTAAGAGTTGTTCTGAATAAAGAAAATTTACCATGGAATATTTACTCAAATATTAGTTTAATTCACAAAAGACGTCATTATTTATTTTCAAAATGATTTATATTAAAATGAATGTAAAAAAAGGAAATCTAAAATTTAGGGAAGATAAATATGAAGAAGTAGTTGGATTTTTGAACTAAAATAATAGTTACATATCCAAGTGGTGATCCTAACTTGAAAGTTGAAAACAATTATTATTACGTCATTTTCAAGGGCCATCTACCGGATTACCAGAAACGGGCTGCGGTTTTCATCGTCCATAAATAATCCAAAAATTGGTATCTTTATCAAATCAAAATCAAAATCAAAATCATCTTTGTAGTTTGTAGACGCGGAGAGAAAGAAGAAAAAGTGCGATGCAATTGCTTTTGCAGATTCAGTGAATCAATCAATCAATCAATCAGAGCCCTAATTTGACGCCGGAGATGATGCTCGTGTCGGTAGTGGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTGGCGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCCGCCCGGCCCCTAATTCGCGCGGCGTAG

mRNA sequence

ATGAAGAAACCAGGGTCGCCCACGTGGAAATGTGACAAAGAGGGATTTAAAATACCTGCTCATGCTCCTAGAGTTGTTAGGAATTCGAAGGCGTTTCGGGAAGAACTAGGCGGAACCGGGACGGCCAGAGGTTGCAGGGACCGAACGGAAGCGAACGAGCTAGGCCTGCGCAAGCGGGCCGAATGGTCGGCCGAGGCCGACCATAGCCCGACCCTTTGGTCTGATCTTCTTTGGAGCCCTAATTTGACGCCGGAGATGATGCTCGTGTCGGTAGTGGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTGGCGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCCGCCCGGCCCCTAATTCGCGCGGCGTAG

Coding sequence (CDS)

ATGAAGAAACCAGGGTCGCCCACGTGGAAATGTGACAAAGAGGGATTTAAAATACCTGCTCATGCTCCTAGAGTTGTTAGGAATTCGAAGGCGTTTCGGGAAGAACTAGGCGGAACCGGGACGGCCAGAGGTTGCAGGGACCGAACGGAAGCGAACGAGCTAGGCCTGCGCAAGCGGGCCGAATGGTCGGCCGAGGCCGACCATAGCCCGACCCTTTGGTCTGATCTTCTTTGGAGCCCTAATTTGACGCCGGAGATGATGCTCGTGTCGGTAGTGGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTGGCGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCCGCCCGGCCCCTAATTCGCGCGGCGTAG

Protein sequence

MKKPGSPTWKCDKEGFKIPAHAPRVVRNSKAFREELGGTGTARGCRDRTEANELGLRKRAEWSAEADHSPTLWSDLLWSPNLTPEMMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSARPLIRAA

Homology

[Close]

BLAST of Lag0032492 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 86  MMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSA 138
           MMLVSV+AE+LEEYTVLL EVLRQLFHSAPFPRRVRFLILHNLPFA+NSSS+
Sbjct: 1   MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSS 52

[Close]

BLAST of Lag0032492 vs. NCBI nr
Match: KAG7017064.1 (hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 86  MMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSA 138
           MMLVSV+AE+LEEYTVLL EVLRQLFHSAPFPRRVRFLILHNLPFA+NSSS+
Sbjct: 1   MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSS 52

[Close]

BLAST of Lag0032492 vs. NCBI nr
Match: XP_022928978.1 (uncharacterized protein LOC111435715 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 86  MMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSA 138
           MMLVSV+AE+LEEYTVLL EVLRQLFHSAPFPRRVRFLILHNLPFA+NSSS+
Sbjct: 1   MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSS 52

[Close]

BLAST of Lag0032492 vs. NCBI nr
Match: XP_023520510.1 (uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 86  MMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSA 138
           MMLVSV+AE+LEEYTVLL EVLRQLFHSAPFPRRVRFLILHNLPFA+NSSS+
Sbjct: 1   MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSS 52

[Close]

BLAST of Lag0032492 vs. NCBI nr
Match: XP_022159655.1 (uncharacterized protein LOC111025999 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 86  MMLVSVVAELLEEYTVLLAEVLRQLFHSAPFPRRVRFLILHNLPFADNSSSARPLIR 143
           MMLVSVVAELLEEYTVLLAEVLRQLF+SAPFPRRVRFLILHNLP  +NS+S+ PL R
Sbjct: 1   MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSAPLNR 57

The following BLAST results are available for this feature:

BLAST of Lag0032492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970120.1	1.5e-15	90.38	uncharacterized protein LOC111469109 [Cucurbita maxima]	[more]
KAG7017064.1	1.5e-15	90.38	hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022928978.1	1.5e-15	90.38	uncharacterized protein LOC111435715 [Cucurbita moschata]	[more]
XP_023520510.1	1.5e-15	90.38	uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo]	[more]
XP_022159655.1	2.0e-15	85.96	uncharacterized protein LOC111025999 [Momordica charantia]	[more]

BLAST of Lag0032492 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48175	OS04G0581700 PROTEIN	coord: 86..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032492.1	Lag0032492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity