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Lag0032318 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATACTTGGGATTATCAACGAACTTCCAAGGTCTCTTGCTTTTTCACACTTGCTTCACATTGTTTTGTTTTTATGCAAGCTCTAGGTGTTTTATCTTTTAATCTCTATTGATTCTTCTTGTTATTGATTTGTTGTGTTGATTGCTTTCAGTTCAACGGAGGTGGAACAATCTATTCTTAAAGACTTGAGAAATTGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCGGTCAACTTTTATACCTTCATTAATACACACAATGAGTATCTATCTAGTTTCCTTTCTGTCTCTGTTAACGCTTAACAGTTTATTCAGTCTCAACGTGCATGTTGTTGATATCATCGATTCTGTGTAGTTTAAACTGTTCGTCAATGTCACGTGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGTAAGTCTTCTTTTTAAGTTACTTAAAACAACCTAATTATTGGTTGCTTTTTAAGTGGACAGTCGGCCTCCAAATCCTTTTTAAGTGGCTTGTGGAGAGTAAGGGTTATTATACAACTTTCACATATCCAAATTAGGTGATATGTTAGAGAAGCTAACGTTGAGGGTGCAACCTACAAATCTTCTGCAACTTTTGTTTTCATTTGAATGGTGCACCTTTGTTTTGAGCATTAATTGCAGTACAATTACAATATATGAGTTTTAACTTCTTTTGTTCTCCATTTATTTTTCTTTGCTGGTCAAATGTACAGGAAGGTATAGCACGAACCATTGTATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTAAATTTACTGAAGAATCACAAGCTGATAAGCTGCTGGGCGGTGGAAGAGGTTAAAACCTTTTCTCATTAATGCATTTGGTATCATTTCCTATATTGCTTAGACAACTTCAACCGTTATTAAGTTGGATTTTCTGATTTCAACTTGTGGACCTTGTGTTCTCCTTATGATTGCATTCATAACTTTAAAAATGAAAAATGTTCCTGTTCATAATTTTTGCATTTCATAACCACGGTTAATAACTTTTTGTAATTTGATAAAGTTTTGCTTAACCCTTGAATTATAATTAGTCTTTGTGAGACAGAAACAAAGTAAAAACAAATAAAAACGTTGAAGGATTTTTAAAGTTATTACATTTTTTTTTTACTTTAAGATGGCAACTGAGATGATATTGGTTCATATATCTTATATACATGTAGGTGGAGTGCAGCTGCCAGGTAGTTGGACACTTGATTGGATTCTGGAACTAGAAGGATAG ATGATACTTGGGATTATCAACGAACTTCCAAGTTCAACGGAGGTGGAACAATCTATTCTTAAAGACTTGAGAAATTGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCGGTCAACTTTTATACCTTCATTAATACACACAATGATTTAAACTGTTCGTCAATGTCACGTGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGAAGGTATAGCACGAACCATTGTATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTAAATTTACTGAAGAATCACAAGCTGATAAGCTGCTGGGCGGTGGAAGAGGTGGAGTGCAGCTGCCAGGTAGTTGGACACTTGATTGGATTCTGGAACTAGAAGGATAG ATGATACTTGGGATTATCAACGAACTTCCAAGTTCAACGGAGGTGGAACAATCTATTCTTAAAGACTTGAGAAATTGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCGGTCAACTTTTATACCTTCATTAATACACACAATGATTTAAACTGTTCGTCAATGTCACGTGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGAAGGTATAGCACGAACCATTGTATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTAAATTTACTGAAGAATCACAAGCTGATAAGCTGCTGGGCGGTGGAAGAGGTGGAGTGCAGCTGCCAGGTAGTTGGACACTTGATTGGATTCTGGAACTAGAAGGATAG MILGIINELPSSTEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRGGVQLPGSWTLDWILELEG Homology
BLAST of Lag0032318 vs. NCBI nr
Match: PPD77731.1 (hypothetical protein GOBAR_DD25338 [Gossypium barbadense]) HSP 1 Score: 108.2 bits (269), Expect = 5.3e-20 Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0
BLAST of Lag0032318 vs. NCBI nr
Match: XP_016750426.2 (LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5 [Gossypium hirsutum]) HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20 Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of Lag0032318 vs. NCBI nr
Match: KAG4197962.1 (hypothetical protein ERO13_A05G058900v2 [Gossypium hirsutum]) HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20 Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of Lag0032318 vs. NCBI nr
Match: PPD66366.1 (hypothetical protein GOBAR_DD36751 [Gossypium barbadense]) HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20 Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of Lag0032318 vs. NCBI nr
Match: KAB2080284.1 (hypothetical protein ES319_A05G060600v1 [Gossypium barbadense] >PPS03007.1 hypothetical protein GOBAR_AA17652 [Gossypium barbadense] >TYH15695.1 hypothetical protein ES288_A05G062500v1 [Gossypium darwinii]) HSP 1 Score: 107.5 bits (267), Expect = 9.0e-20 Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 0
BLAST of Lag0032318 vs. ExPASy Swiss-Prot
Match: Q6S7B0 (Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20 Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of Lag0032318 vs. ExPASy Swiss-Prot
Match: Q15542 (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens OX=9606 GN=TAF5 PE=1 SV=3) HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04 Identity = 23/65 (35.38%), Postives = 42/65 (64.62%), Query Frame = 0
BLAST of Lag0032318 vs. ExPASy Swiss-Prot
Match: Q8C092 (Transcription initiation factor TFIID subunit 5 OS=Mus musculus OX=10090 GN=Taf5 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04 Identity = 23/65 (35.38%), Postives = 42/65 (64.62%), Query Frame = 0
BLAST of Lag0032318 vs. ExPASy Swiss-Prot
Match: P38129 (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TAF5 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04 Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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